AMCG00014311


Basic Information

Item Value
gene id AMCG00014311
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8731578 ~ 8758181 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014311
ATGGACAATGGGATGCTCTTCTGTGGGACAATGAAAACTCCCTTGGTTTATCTTTTGTTCATCGGTTTGACCTGCCGCCTTGGTTTATCCCAGATAGCAGGAACAGTTAATGAAGAAACAAACGACAATATTACCATCTTCACCAGGATCTTGGATGGCCTGCTTGATGGATACGACAACAGGCTGCGTCCTGGACTTGGAGaaaggTTAACAGAGATCAAGATAAATATCTATGTTACGAGCTTCGGCCCTGTCTCTGACACTGAAATGGAATATACAATTGATGTTTTCTTCCGCCAAAGCTGGAAAGACGAACGACTTAAGTTTAAGGGTCCAATGGAAAACCTCCCCTTGAATAACCTTCTAGCCAGCAAAATTTGGACTCCAGACACCTTCTTCCTCAATGGCAAGAAATCCATTGCTCACAATATGACAACTCCCAACAAACTGCTCAGGCTGAAGGATGATGGGAGTCTTCTGTACACAATGagGTTAACCATATCAGCCGAGTGCCCTATGCAGCTTGAAGACTTCCCCATGGATGCGCATGCGTGCCCTCTGAAGTTTGGGAGCTATGCTTACCCTGTTTCTGAGGTCGTTTACACTTGGACACAAGATGCTGCCAAATCCGTGGTGGTGGCTGAGGATGGCTCAAGACTAAACCAGTATCATCTGATTGGGCAAACAGCTGGAACTGAAGACATCCATACCAGCCGAGGTGTTACCACTGTGCTCACCATGACAACACTCAGCATCAGCGCCCGAAACTCTTTGCCAAAAGTTGCTTACGCCACAGCCATGGACTGGTTTATAGCAGTATGCTATGCTTTTGTCTTTTCCGCTTTAATCGAGTTTGCTACTGTCAACTACTTCACCAAGAGAGGCTGGGCTTGGGATGGGAAAAAAGCCCTGGAGGCATATCAGCCCAaaaaaaaggaCCCCATGGCACTGtcaaagaaaccaaacaacGCCTGCTCCACCGGTGTGAACTACACACCGAATATGACAAAAGATGCTGTCCTTTCGACCATTACAAACAGCACATCTTTACAGTTGAAACCTGCTGAAGTCAAAGCCCCAGATCCTAAAAAGACTTATAACAGTGTCAGCAAGATTGACAAAATGTCGAGGATTGTCTTTCCTGTGCTGTTTGGGACTTTCAACCTCGTTTACTGGGCCACATACTTAAACAGAGAACAAATGAAGGCTCTCTTTGTTTCCTTTGAAGAAATGGAATACCTTCTCAACTTCTCTTTGGATTATGTGTGCGTTCACCCTGGCCGGGGTGCCTGTGCGGTGGAAGGAATACAGAATGTCATACCCTGCAGCATGGAAGCAACATCTGACCTTTATAGACTAGTGAAGAAGAAATGCGCCGCTGGCAGCTGGGTGCTCTGTCTGGGAGAGCGGCTGCCCATCGCGCTGTCCGTGGTCCTGGACATCATCCTGTACAAAATAGTCATCGAATAA

Function

GO: NA

KEGG:

id description
K05175 GABRA; gamma-aminobutyric acid receptor subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014311 True 1470 mRNA 0.47 10 8731578 8758181

Neighbor

gene id symbol gene type direction distance location
AMCG00014310 gabrg3,LOC107711006 coding downstream 116577 8601162 ~ 8615001 (-)
AMCG00014312 NA coding downstream 192529 8536937 ~ 8539049 (-)
AMCG00014304 NA coding downstream 397126 8330056 ~ 8334452 (-)
AMCG00014305 nipa2 coding downstream 405158 8322434 ~ 8326420 (-)
AMCG00014303 NA coding downstream 426397 8304531 ~ 8305181 (-)
AMCG00014317 cnga3a,LOC108441138 coding upstream 271924 9030105 ~ 9040045 (-)
AMCG00014319 NA coding upstream 289123 9047304 ~ 9050642 (-)
AMCG00014320 NA coding upstream 302852 9061033 ~ 9085213 (-)
AMCG00014318 NA coding upstream 373234 9131415 ~ 9135387 (-)
AMCG00014326 NA coding upstream 386357 9144538 ~ 9147337 (-)
G69086 NA non-coding downstream 481017 8226494 ~ 8250561 (-)
G68981 NA non-coding downstream 857220 7874153 ~ 7874358 (-)
G68905 NA non-coding downstream 1105203 7625985 ~ 7626375 (-)
G68875 NA non-coding downstream 1265916 7465409 ~ 7465662 (-)
G68874 NA non-coding downstream 1271689 7455978 ~ 7459889 (-)
G69233 NA non-coding upstream 132375 8890556 ~ 8890839 (-)
G69250 NA non-coding upstream 240245 8998426 ~ 8998626 (-)
G69352 dcaf6 non-coding upstream 591607 9349788 ~ 9355238 (-)
G69372 NA non-coding upstream 831643 9589824 ~ 9590081 (-)
G69373 NA non-coding upstream 832995 9591176 ~ 9591381 (-)
G69156 LOC107673457,LOC105895139,LOC107711008,LOC106521848,LOC107716961,LOC101064050,LOC103356925 other downstream 347354 8383285 ~ 8384224 (-)
AMCG00014298 NA other downstream 572988 8155932 ~ 8158590 (-)
AMCG00014297 NA other downstream 592452 8134903 ~ 8139126 (-)
AMCG00014278 NA other downstream 1308287 7413729 ~ 7423291 (-)
AMCG00014276 LOC106575771,LOC106574874,LOC107705522,LOC107584803,LOC105911816,LOC105019730 other downstream 1319688 7402152 ~ 7411890 (-)
AMCG00014328 mpc2,LOC107673680,LOC107695492 other upstream 547058 9305239 ~ 9317167 (-)
AMCG00014340 NA other upstream 1242953 10001134 ~ 10017751 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other upstream 1299916 10058097 ~ 10061230 (-)
G69537 NA other upstream 2038535 10796716 ~ 10798147 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other upstream 2366848 11125029 ~ 11137086 (-)

Expression


Co-expression Network