AMCG00014313 (atp10a)


Basic Information

Item Value
gene id AMCG00014313
gene name atp10a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8943995 ~ 8972432 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014313
tcaatCATAAAATTTCCCCTGTTGTTACTCTGTAGGCATGAAAAGAAATACCTGGAGAAATACTGGAAAGAAATCCAAGTTGGGGATTTCATTCGGCTGCGGTGCAATGAGATCATCCCTGCAGATGTCCTGCTCCTGTCCTCCAGTGACCCAGACCGCTTGTGTTACATTGAGACCGCCACCCTGGATGGTGAGACCAACCTCAAGCAAAGACAGGTGGTCCGGGGCTTCATTGATCTGGATTGTGAATTTGACCCAATGAAGTACAACAGCATTATTGAATGTGAGAAGCCAAATAATGACCTCAACAGGTTTCGTGGTTACATcattCACAAAAGTGGAAAGAGAGATGGGCTTTACAAGGATAACCTCTTGCTTCGAGGATGCACTATTAGAAACACAGAGGAGGCTGTAGGAATAGTTATTTATGCTGGTCATGAAACTAAAGCAATGCTGAATAACAATGGACCCCGGTACAAGCGCAGCAAGCTGGAAAGGCAAATGAATATTGATGTCTTTTGGTGTGTTATCATACTTGTTGTTATGTGCCTGTTTTCAGCAATTGGTCACGGTCTGTGGGTGTATCAATACGGAGACAAGCGGCCAGTGTTTGATGTCTTGAGTCCTGAAGGAACTGAAATGTCTCCTGCTCTGTCTGCTATATACCTGTTCCTAACCATGATCATTGTTTTTCAGaTCTTAATTCCCATCTCTCTGTTTGTGTCTAttgaaattgtgaaaatatgccaagtgtatttcattcatcaagACATGGACTTGTACGACGAGGAGACGGACTCTCACCTCCAGTGCCGGGCCCTTAACATAACCGAGGACTTGGGGCAGATGCAATACATCTTCTCTGATAAAACTGGCACTCTCACGGAGAACAAGATGGTGTTCCGGAGATGCACAGTGATGGGAGAGGAGTATTCTCATGATGCCAATGCGAGAAGACTGGCAATGTACCAAGAGGCGGACTCTGAAGAGGAGGAGTGCACGTCCAGGGGCGGGACGTTGCCGCGGAGGGACAGCGTGACGAGCCATCACAGCGCCCGCGTCGTCCACAGGACACAGAGCACCAAGTCCCACCGCCGGACGGGCAGCCGTGCTGAGGCCAAGAGGGCCAGCATCCTCTCCAAGCACACGGCCTTCAGCAGCCCCATGGAGAAGGACATCACTCCTGACCCCCAGCTCTTGGACAAGGTGAATGAATGTGCCGTCCAGATGGACTCCATGCGAAGTCATGGCCAGCCTTTGAGCCAGCTGACCTCTGAGCTCTCGGACATAATCGACTTCTTCATTGCTTTGACAATCTGTAATAATGTTGTCGTGTCCTCCCCAAATCAGCCGAGGCAAAAGGTGCGGATGAGGTTTGAGCTGAAATCTCCAGTGAAGACTATCGAAGACTTCATCAAACGCTTCACCCCGAGCCGCCTGACGTCCGGGTccaccagcagcagctcctccagccTGGTCACCAGCCGGTCAACACACAAGACGTCCAGCGTCCTCTCCTCGCCCTCCGCAGAGAGCACTTTAATCAGACTGGAGGAGGAGCTGCCCCATGCCCCCCACGTCCTGGAAAGTGCCCTCGGCTCCGCCCACCTGGGCCTGGAGGCAAAGGCCTGCCCCTTGGAGGAAGGCGAGCTACGCTATGAGGCGGAGTCGCCCGACGAGGCGGCCCTCGTCTATGCCGCCAGGGCCTACAAGTGCTCCCTGGTGGGCAGACTTCCTGACCAGGTCACGGTGGAGCTGCCACACCTGGGCAAGCTGAACTTTGAACTCCTGCACACGCTGGGCTTCGACTCCACCAGGAAGAGGATGTCAGTGGTGGTCAGACACCCGCTGACGGACCAGATTGTTGTTTACACCAAAGGAGCCGACTCGGTTGTTATGGACCTCATTAAGCCGTGCTCTACAGATGATACCAAAGGTAAACGGCAAAGGAAAATCCTGACTAGAACCCAACATTATCTGAACTTGTATGCTGCTGATGGCCTCAGGACCCTTTGTATTGCTAAAAAGGTCCTCAGTAAAGAAGAATATGCAGGCTGGTTAAAAAGTGCAACTGGAGTTGAAGACCGTTTACAGGATGGGGTACCAGAAACTATTGCTGCGCTACGGAAAGCTGGTTTACAAATATGGGTGCTAACGGGTGACAAGCAAGAAACCGCCATAAACATTGCTTATTCCTGCAGACTTCTAGACCCTGAGGAAGAGATTATTACTCTGAATGCAGAGACGCAGGAAGCATGTGCTCTACTGCTGGATGAGAGTTTACACTATATCCAATCCAAGTTTCTCGGCAGCACACCAGACCATGCAGCTAGGATCTTTGAGGAGGATTTTGCCGCTTTTGAAAtgccccccacctccacctTTCTGGTCCATCGCCTGGGCTTGGTCATCGATGGCAGAACGTTGGCCTATGCTCTAGATAAAAGCCTGGAGGACAAATTCCTTGCTGTGGCCCGCAGCTGCAGATCAGTGCTGTGCTGTCGGTCCACCCCGTTACAGAAGAGCATGGTGGTGAAACTGGTGCGCAACAAACTCAAAGTGATGACCTTGGCTATAGGCAAGTATCTCTGTGGCCCTGCATACACTGAGAAATGGTTGAAAGGTGATGGAGCTAATGATGTCAGTATGATCCAGGTCGCTGATGTTGGAGTGGGGATTTCGGGACAGGAAGGCATGCAGGCAGTGATGGCCAGTGATTTTGCCCTCCCGCGCTTCCAGTATCTGCAGAAACTCCTTTTGGTTCATGGGCACTGGTGTTACTCTCGTTTGGCCAACATGATCCTCTATTTCTTCTACAAAAATGCAATGTTTGTAACCCTCATTTTCTGGTACCAGTTTTACTGTGGGTTCTCAGGATCAACCATGATAGATCAGTGGTACATCATTTTCTTTAATCTGATGTTCTCTGCCTTCCCTCAACTCATCACTGGAACCCTTGACAAAGATGTTTCTCCGGAGATTCTCCTAGAACTACCTCAGCTCTATAGAAATGGACAGAACTCAGAGGAATATAAGCCATACATGTTCTGGATGAATATGATTGATGCTTTCTACCAAAGCCTTGTCAGCTTTTTCATCCCTTATTTTGCATATGCTGACTCGGATGTTGATTTGATTACGTGGGGGACTCCCATCATCACCATCACACTCTTTACCATTTTGTTGCATTTAGGAATTGAAACCAAAACCTGGacatgGCTCAATTGGGCCTCCATTGCTTTCAGCATCGTCCTGTTCTTCATGGTTGCCCTCTGCTACAATGCCTCTTGTCCTACTTGCTTTTCTCCATTCAATCCCTACTGGACCATGCAGAAGCTTATGGGGGACCCCACATTCTATGTGCTGTTAATTATCACCCCCATCGTTGCTCTGATGCCCAGATACTTCTACAGAGCGTTTCAGGGAACACTATTCCCCAGCCCGGTGCACGTGGGTCGCCAGTTGGACAAGCTTTCCCCCGAAACCCGCAGAAGCATTGTAAGCCAAATCAAAGCCAAAGCCGGAGCATCATTTGGTCCCGTACCTACATTTTATCAGTTTCCCGGACCTTTTCCAAGGGATTACGTTCACAGGACCGAAGAATCCCATTCTTGCAAGAGGCGAGGAAATCCCAAAGACTCTAAACAGCCAGGAACCCCTCTAGCTGCTGCTCCAAATGCGCAGGATGATGAGAGAGACTCTGACTGGACAACAGGGAACTCTTTCGGGGCCGTGCACAATAAGCAGGACAGTGCTGAACCCAAAAGTCCTACAGTTTCAGAAACTGATACTCTGCCTTATTCCAAAGAGACCTCCAGGCCCACTGTGGATTTTGAGCCTCCTTCCTTTGAGGACAATGTGCAGCTCGACTCCAACACTGCAGACTTTAGTTTAGTGAAATGGATAACGTCAACTCCTTTGTTTACCCAGACAGGGCGTGCACTGCAGTCAACTTCATCTCATGTGAGCTTACCAGCTGCAGAGGAAAGCGAGGGGATCTCTCTGCCTTCCAGCAACCAGCACAGACTGGACAATACTGTTGACCCCGACAGGTTAAAGGAGGGCACTCTTGAAACAACGTTATTATGACATATTTTAgaccatttatttaaatttaaattgcacGCTAGTTGTACAATATTCTCTTTTCATAATTTGAGCATTCTTTTATAAAGATAAAATAGGtaccatatatatttataaatgtgtgtgtatatgtatatacatttaattactaACCTCCGTTATTTTAGGTTTCATATCTAAAATTTTCCCCGTTTCTCTTATTTTTGGAGAGTAGAAGGCTTAGGAAACTGGACACGCTCCATTCTCTTGAAAGTTTACAAagtccttttttttctcattagaGACCAGAGGCATGTATTGTGCTTGACTGGAGAAATTCCTATACAGATGTGTTTGGGActacttttgtttagttttgccCAATATATAACGCAATGGATATCATTAGTTATTAAAGTCATTAAGAGTTTATTTAATGGCTATGGTATCAGACTCAAAATGGGCATGCAAATTAGTTTTCACATCTTGTTGCATTCCATTTCTGCACAATTAAGTCACAACTAGTTAGCTACTACAGCTTACAGTTTTCTGCTTTTAGAACAAGACCCTTCAAGAGGTCGGTTTTTCAATCCAACATCCACTTGCGATCAGGTGTTTGGTAATTAAAACAAGGGAATGTTAAGAGTGGTACTGAAGTTATAGGTTAATGACCAATCTGTGACccatagatagatggatagatagatataatatGACTCCATTCCAAAGGAACCAAGTTTGAATTCGGTCAcacttttgtttcctgtttttatgaTTATGCTGCTCTTTTATTGGTTAAAGGACACCATGTGGTCTATACATGTCAAGTGTTCTTCAATAGATTTTACTGGCCTTATTCACACAGACAATGTATGTGGTTAGTTTAATCCCAGCTGCGGTAATGGCAAAGATTAATTTGACTCTGACGATGTCTGTATTTCCTATTAGAGGATACGTGTTAAGCATATAAATACTGGAATCACTCTTATCTGGGACCAGAGAGCTAGGTACTAGTTTAGAACGACTTCCATGTATGAAAACACTACAACGCAACACTACTACAGTGTCCTTCATGGGCGCTTTTCTCCTTTTATGCGGCGAGAGCGGGTGGTGTGCCTGGAGAATCGGCATGCTCAAATATGCAGGTTACAGAAAATCATACAAGCGCCGGGACCCCGAGGACACGAAGACCGCCGATTCCACGAAAGTGTTGCCTTGGATCACATACTCTGTGCTGACAGCGCTGTTATGGCAttccttataaaaaaaaattctttaTATGTATCCCTAATCCCTTGGAAAATTTGAATTAAGGTAACACAACATATCAGGACAGACCATAGCTATATTAATGTACAAATCAGGAagctaacttttttttattgtcaaatttatttttcttttagctgttatatatatatgtgtgtgtgtatatgaataatgtgtgtgtatatatatttgtatatgtatatactttatttCTGTGTTCCTGACTACATTTTCAGGACGCTAGACTACTCCTAAATCAAGCTGGTCACATGGTCAGGATGTTGTCTTGTGTAGGGCTGCAGAGAGCTCGATTTTGTTGCTGGTGCACGTCTAATAAATTGTGTGAAGTGAAACGTCATGTACGCTCTCCAAGGCCACCTGACAGATTACTTGCATTGTATTGATATATTGCAAAGGTAAAAATAATCAGCCATAAATTATCATTTGTGATTTTactttttcacaaaaataagaTGACTGAGAATGCAATATATGACAGATGAAAACCATAACTGCTATTTTAGTGTATGTAGTTGCATTATGCTTTTTTCACAAAATAGGCTTGAAAATACATACTGGATGATACAGCTGGAAGTTCCCGTCACCGGCAGTGTCTCTGAATGGAAGCACTTGCGTTCAGGTGTTtggtaatgtaatgtacaatcAACATATCTCCTGTCGTCTGCTTGGAACAATATTCAATGTTTTGACGATTTCGCCTTTGGTCTGTAAGGGAGGCTACAATCCCTTCAGGGAGCACAAGAGTTTAggattctttttttgtttgttttttaacctaGATTTGCCAAAGGGATTCATGTCTTGAAAGATCTGACCAATAATGCTGCCTGCTTTGACGTCTCTCCTTCATCTGAATTTCTACATTAGGAATTCAAATCATCTTCAGAATGTAgttaaatagttataataaaatacttaGTTTACTGAATTATATGCAGATATGTTAGCATATGTTAAAGAACGTTGTTCGGAACAATACCTTGTTTTGTAAGATGCATAAAAGAAgccataatttattttccaatttactGACCTGCTGGTCAGTTGAGttgcatatatttttacagaacaATATTATGTGCCTGAACACTGGATGCAGAATCTTGATTAAAACAACACTGCC

Function

symbol description
atp10a Predicted to enable ATPase-coupled intramembrane lipid transporter activity. Predicted to be involved in phospholipid translocation. Predicted to act upstream of or within phospholipid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human ATP10A (ATPase phospholipid transporting 10A (putative)).

NR:

description
PREDICTED: probable phospholipid-transporting ATPase VA isoform X2

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006812 cation transport biological_process
GO:0045332 phospholipid translocation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01530 E7.6.2.1; phospholipid-translocating ATPase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014313 True 6478 mRNA 0.45 20 8943995 8972432

Neighbor

gene id symbol gene type direction distance location
AMCG00014315 NA coding upstream 68163 8875167 ~ 8875832 (+)
AMCG00014314 gabrb3,LOC107673538 coding upstream 119463 8795228 ~ 8824532 (+)
AMCG00014309 oca2,LOC107716962 coding upstream 436308 8478982 ~ 8507687 (+)
AMCG00014308 herc2,LOC102311645,LOC101466252,LOC102196790 coding upstream 542636 8386165 ~ 8401359 (+)
AMCG00014307 LOC103356925 coding upstream 561711 8343001 ~ 8382284 (+)
AMCG00014316 ube3a,LOC101472780 coding downstream 32068 9004500 ~ 9020633 (+)
AMCG00014321 NA coding downstream 117442 9089874 ~ 9130531 (+)
AMCG00014323 LOC104949108 coding downstream 164599 9137031 ~ 9144426 (+)
AMCG00014322 nme7,LOC107732015,LOC107590639,LOC107659027 coding downstream 185312 9157744 ~ 9172062 (+)
AMCG00014324 NA coding downstream 286862 9259294 ~ 9273055 (+)
G69232 NA non-coding upstream 53161 8890586 ~ 8890834 (+)
G69206 NA non-coding upstream 208056 8734323 ~ 8735939 (+)
G69023 NA non-coding upstream 807785 8133288 ~ 8136210 (+)
G69006 NA non-coding upstream 928992 8014744 ~ 8015003 (+)
G68982 NA non-coding upstream 1069253 7874527 ~ 7874742 (+)
G69326 NA non-coding downstream 394105 9366537 ~ 9376350 (+)
G69384 NA non-coding downstream 929018 9901450 ~ 9910048 (+)
G69400 NA non-coding downstream 1001992 9974424 ~ 10028351 (+)
G69428 NA non-coding downstream 1082059 10054491 ~ 10054711 (+)
G69431 NA non-coding downstream 1082945 10055377 ~ 10055733 (+)
AMCG00014272 tbc1d23 other upstream 1461435 7464503 ~ 7482560 (+)
G68848 NA other upstream 1527401 7413640 ~ 7416594 (+)
G68830 NA other upstream 1594528 7346195 ~ 7349467 (+)
G68475 NA other upstream 4292031 4649200 ~ 4651964 (+)
AMCG00014196 NA other upstream 4812277 4127476 ~ 4131718 (+)
G69406 tgfbrap1,LOC102780916 other downstream 1030626 10003058 ~ 10008648 (+)
AMCG00014345 NA other downstream 1175547 10147979 ~ 10151913 (+)
AMCG00014407 LOC107725344 other downstream 4273877 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 4682806 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 5217132 14189564 ~ 14205014 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032189 atp10a coding NC_007117.7 CM002890.2 38626684 ~ 38730530 (+)