AMCG00014314 (gabrb3,LOC107673538)


Basic Information

Item Value
gene id AMCG00014314
gene name gabrb3,LOC107673538
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8795228 ~ 8824532 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014314
GACTACACATTGACCATGTACTTTCAACAATACTGGAGAGACAAGAGGCTGGCATATTCAGGAATTCCACTAAACTTAACACTGGATAACCGGGTAGCAGATCAACTATGGGTACCCGACACCTACTTTTTAAACGACAAGAAGTCTTTCGTGCATGGCGTCACTGTGAAAAACCGGATGATCCGCCTGCATCCCGATGGCACCGTGCTCTATGGCCTCAGgATCACAACAACAGCTGCTTGTATGATGGATCTGAGGAGGTACCCGTTGGATGAACAGAACTGCACATTGGAAATAGAAAGCTATGGCTACACAACAGATGACATTGAATTCTACTGGAGAGGGGGGGACAGTGCTGTGACCGGAGTTGCCAGGATCGAGTTGCCTCAGTTCTCCATCGTGGAACATGGACTGGTTTCAAGGAATGTTGTCTTTGCCAcagGTGCCTACCCACGACTGTCTCTGAGCTTTAAGTTAAAGAGAAATATTGGATACTTCATCCTTCAGACCTACATGCCCTCAATTTTGATTACCATCTTATCTTGGGTGTCATTTTGGATCAATTATGATGCTTCTGCTGCGAGAGTTGCTTTGGGAATCACGACTGTGCTGACGATGACGACGATCAACACTCACCTGCGAGAGACTCTGCCTAAGATCCCCTACGTCAAAGCTATCGACATGTACCTGATGGGctgctttgtctttgtcttcttGGCCTTACTGGAATATGCTTTTGTCAACTACATCTTCTTCGGGAGAGGTCCACAGATGCAGAAGAAACTTGCAGAGAAAGCAGAAAAGGCCAACAATGACCGGTCCAAGTATGAGGGCAACAGGGTGGATTCTCATGGAAACATCTTGCTAACAACCCTGGAGATACACAACGAAGTGGCAGGCAACGAGGTCACAACCAGCGTAACAGAGTCTCGGAACTCCTCCTTGGCCTTTGACAACTCAGGAATCCAGTACAGGAAACAGAGCATGCCTCGAGACACAATGGGACGCCACAGCATGGACAGGAACGCCCAGTTCAAGAAGAGCCGCCTACGGAGAAGGTCTTcacaacttaaaataaaaatccccgATCTGACTGACGTGAACGCTATTGACAGATGGTCAAGAATAGTGTTCCCCTTTGCATTTTCACTCTTCAACTTAATCTACTGGCTTTACTATGTGAACTAA

Function

symbol description
gabrb3 Predicted to enable neurotransmitter receptor activity. Predicted to contribute to GABA-A receptor activity and chloride channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; chloride transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within chloride transport. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in eye and telencephalon. Human ortholog(s) of this gene implicated in childhood absence epilepsy and developmental and epileptic encephalopathy 43. Orthologous to human GABRB3 (gamma-aminobutyric acid type A receptor subunit beta3).

NR:

description
PREDICTED: gamma-aminobutyric acid receptor subunit beta-3 isoform X4

GO: NA

KEGG:

id description
K05181 GABRB; gamma-aminobutyric acid receptor subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014314 True 1188 mRNA 0.47 6 8795228 8824532

Neighbor

gene id symbol gene type direction distance location
AMCG00014309 oca2,LOC107716962 coding upstream 287541 8478982 ~ 8507687 (+)
AMCG00014308 herc2,LOC102311645,LOC101466252,LOC102196790 coding upstream 393869 8386165 ~ 8401359 (+)
AMCG00014307 LOC103356925 coding upstream 412944 8343001 ~ 8382284 (+)
AMCG00014306 cyfip1 coding upstream 473489 8263436 ~ 8321739 (+)
AMCG00014299 slc9a7,LOC107673530 coding upstream 544293 8204822 ~ 8250935 (+)
AMCG00014315 NA coding downstream 50635 8875167 ~ 8875832 (+)
AMCG00014313 atp10a coding downstream 119463 8943995 ~ 8972432 (+)
AMCG00014316 ube3a,LOC101472780 coding downstream 179968 9004500 ~ 9020633 (+)
AMCG00014321 NA coding downstream 265342 9089874 ~ 9130531 (+)
AMCG00014323 LOC104949108 coding downstream 312499 9137031 ~ 9144426 (+)
G69206 NA non-coding upstream 59289 8734323 ~ 8735939 (+)
G69023 NA non-coding upstream 659018 8133288 ~ 8136210 (+)
G69006 NA non-coding upstream 780225 8014744 ~ 8015003 (+)
G68982 NA non-coding upstream 920486 7874527 ~ 7874742 (+)
G68904 NA non-coding upstream 1168824 7625988 ~ 7626404 (+)
G69232 NA non-coding downstream 66054 8890586 ~ 8890834 (+)
G69326 NA non-coding downstream 542005 9366537 ~ 9376350 (+)
G69384 NA non-coding downstream 1076918 9901450 ~ 9910048 (+)
G69400 NA non-coding downstream 1149892 9974424 ~ 10028351 (+)
G69428 NA non-coding downstream 1229959 10054491 ~ 10054711 (+)
AMCG00014272 tbc1d23 other upstream 1312668 7464503 ~ 7482560 (+)
G68848 NA other upstream 1378634 7413640 ~ 7416594 (+)
G68830 NA other upstream 1445761 7346195 ~ 7349467 (+)
G68475 NA other upstream 4143264 4649200 ~ 4651964 (+)
AMCG00014196 NA other upstream 4663510 4127476 ~ 4131718 (+)
G69406 tgfbrap1,LOC102780916 other downstream 1178526 10003058 ~ 10008648 (+)
AMCG00014345 NA other downstream 1323447 10147979 ~ 10151913 (+)
AMCG00014407 LOC107725344 other downstream 4421777 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 4830706 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 5365032 14189564 ~ 14205014 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_18721338_18772372 GABRB2, GABRB2L coding CI01000000 null 18721275 ~ 18772672 (-)