AMCG00014316 (ube3a,LOC101472780)


Basic Information

Item Value
gene id AMCG00014316
gene name ube3a,LOC101472780
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9004500 ~ 9020633 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014316
ATGAATCCCGACGAGAAGCAGGACTGTGAGTGTGCGCCACCACAGGCCGAGCCTACCCCCGCAGGAGGATCCGACAGATCACCAGGAGAAGCTGACATAGAAAACCCAGAAGCAAGCCGAATGAAGCGAGCAGCTGCAAAGCATCTAATAGAACGCTACTACCACCAGTTAACTGAGGGCTGTGGAAATGAGGCCTGCACGAATGAGTTTTGTGCTTCCTGTCCAAGTTTCCATCGTATGGATAACAATGCGGCGGCCGTTAAGGCCCTCGAGCTGTATAAGATTAATGCAAAACTCTGTGATCCTCATCCCTCCAAGAAAGGAACCAGTTCTGCTTACCTAGAAAACAGTGCCAAAGGAGCCAACAACAACTCGTGCAGCGACAGGAAAATGAACCGGAAGGAGGCGCATTCCGCAAGGGATGACTTTAAAGATTTGAATTTCCTAACAGAAGAGAAGGTGTATGAGATTCTGGGGATGTGTGGAGAGAAAGAGGATTACTCCCCATTGATACGTGTGATTGGCCGAGTCTTCTCCAGCGCCGACGGCTTGGTGCAGAGCTTCCGCAAGGCCAAGCAACACACGAAGGAAGAGCTGAAGTCCCTCCAGGGCAAAGACGAAGACAAGGATGAGGATGAGAAGGAGAAAGCCGCCTGTTCTGCTGCTGCTATGGAGGAAGACTCGGGAGCTTCCTCTTCCAGGACGGGAGAAGGTGCCGCTTCCGGGGCTAACAATGTGCACAAGCTGGGCCCCGACGAGGTGTCTGTGGACATTGACGCGGTGCGCAGGGTCTATAACAAACTGCTGGCGAATGAGAAGATCGAAACTGCCTTTCTCAATGCACTGGTGTACTTGTCACCCAACGTGGAATGTGACCTGACGTACCACAACGTGTACTCAAGGGATCCCAACTACCTGAACTTGTTCATCATCGTGATGGAGAACAGCAACCTCCACAGCCCCGAGTATCTTGAGATCGCCCTGCCTTTGTTTTGCAAAGCCATGAGCAAGCTCCCCCTCCCGGCTCAAGCCAAACTGATCCGGCTGTGGTCCCAGTACACCGCCGAGCAGATCCGCCGCATGATGGAGACCTTCCAGCAGCTCATCACCTACAAAGTGATCAGCAATGAGTTCAACAACCGCAACCTCGTCAACGATGATGATGCCGTGGTCGCGGCCACCAAATGCTTGAAAATCGTTTACTATGCAAACGTCCTCGGTGGGGACTTGGACACAGACCACAATGAGGAAGAGGATGATGAGCCCATCCCCGAGTCCAGCGAGCTGACCCTGCAGGACCTCCTGGGGGAGGAGCGGAGGAACAAGAAAGGCCCCCGGGTGGACCCACTGGAGACAGAGCTGGGCGTCAAGACCATCGACTGTCGCAAACCACTCATCCCTTTCGAAGAGTTTGTGAACGAGCCACTCAATGACGTGCTGGAGATGGACAAGGACTACACCTTCTTCAAGGTCGAGACGGAGAACAAGTTCTCTTTCATGACCTGCCCGTTTATCCTCAATGCTGTAACCAAGAACCTCGGACTGTACTATGACAATAGGATTCGAATGTACAGTGAGCGGCGCATCACTGTGCTTTACAGCCTGGTTCAGGGACAGCAGCTTAACCCCTACCTGCGACTGAAAGTGCGGAGAGACCACATCATCGACGATGCCCTTGTGAGACTTGAGATGATTGCCATGGAAAATCCTGCAGACTTGAAGAAACAGCTGTATGTGGAATTTGAAGGAGAGCAAGGTGTAGATGAAGGAGGAGTTTCCAAAGAATTCTTCCAGCTTGTTGTGGAGGAAATCTTCAACCCCGATATtgGAATGTTCACATACGACGAAACCACCAAACTGTTTTGGTTTAACCCTTCTTCGTTTGAAACTGAGGGCCAGTTTACTCTCATTGGCATCGTTCTGGGCCTGGCCATTTACAATAACTGTATCCTGGATGTGCATTTTCCCATGGTCGTCTATAGAAAATTATTGGGCAAGAAAGGAACTTTTCGTGACCTGGCAGATTCTCATCCGATGCTGTTCCAGAGTTTAAACGAACTTCTGGACTACGAAGGCAGTGTGGAAGATGACATGATGATCACGTTTCAGATTTCACAGACTGATCTCTTCGGGAATCCCCTCATGTACGATTTAAGGGAAAACGGAGATAAAATCCCCGTTACCAACGAAAACCGGAAGAACCTAGACTTTCAAGCACTTGAAGAAACCACAGAATACGATGGAGGGTACAGCCGGGATTCACGCATTATTAAGGATTTTTGGGAAATCGTTCATTCTTTCGCAGAGGAACAGAAGAGGCTCTTCCTACAGTTCACCACGGGCACGGACAGAGCCCCCGTGGGCGGCCTAGGCAAGCTCAAGATGATTATCGCCAAGAACGGCCCAGACACAGACAGGTTACCAACGTCTCACACTTGCTTTAATGTCCTCCTGCTTCCTGAGTACACGACCAAGGAGAAGCTCAAAGAGAGACTTTTGAAGGCCATTACCTATGCCAAAGGATTCGGCATGTTGTAA

Function

symbol description
ube3a Predicted to enable ligase activity and ubiquitin protein ligase activity. Predicted to be involved in protein K48-linked ubiquitination. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol and nucleus. Predicted to be part of proteasome complex. Human ortholog(s) of this gene implicated in Angelman syndrome. Orthologous to human UBE3A (ubiquitin protein ligase E3A).

NR:

description
PREDICTED: ubiquitin-protein ligase E3A

GO: NA

KEGG:

id description
K10587 UBE3A, E6AP; ubiquitin-protein ligase E3 A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014316 True 2538 mRNA 0.51 10 9004500 9020633

Neighbor

gene id symbol gene type direction distance location
AMCG00014313 atp10a coding upstream 32068 8943995 ~ 8972432 (+)
AMCG00014315 NA coding upstream 128668 8875167 ~ 8875832 (+)
AMCG00014314 gabrb3,LOC107673538 coding upstream 179968 8795228 ~ 8824532 (+)
AMCG00014309 oca2,LOC107716962 coding upstream 496813 8478982 ~ 8507687 (+)
AMCG00014308 herc2,LOC102311645,LOC101466252,LOC102196790 coding upstream 603141 8386165 ~ 8401359 (+)
AMCG00014321 NA coding downstream 69241 9089874 ~ 9130531 (+)
AMCG00014323 LOC104949108 coding downstream 116398 9137031 ~ 9144426 (+)
AMCG00014322 nme7,LOC107732015,LOC107590639,LOC107659027 coding downstream 137111 9157744 ~ 9172062 (+)
AMCG00014324 NA coding downstream 238661 9259294 ~ 9273055 (+)
AMCG00014327 dcaf6 coding downstream 308057 9328690 ~ 9361176 (+)
G69232 NA non-coding upstream 113666 8890586 ~ 8890834 (+)
G69206 NA non-coding upstream 268561 8734323 ~ 8735939 (+)
G69023 NA non-coding upstream 868290 8133288 ~ 8136210 (+)
G69006 NA non-coding upstream 989497 8014744 ~ 8015003 (+)
G68982 NA non-coding upstream 1129758 7874527 ~ 7874742 (+)
G69326 NA non-coding downstream 345904 9366537 ~ 9376350 (+)
G69384 NA non-coding downstream 880817 9901450 ~ 9910048 (+)
G69400 NA non-coding downstream 953791 9974424 ~ 10028351 (+)
G69428 NA non-coding downstream 1033858 10054491 ~ 10054711 (+)
G69431 NA non-coding downstream 1034744 10055377 ~ 10055733 (+)
AMCG00014272 tbc1d23 other upstream 1521940 7464503 ~ 7482560 (+)
G68848 NA other upstream 1587906 7413640 ~ 7416594 (+)
G68830 NA other upstream 1655033 7346195 ~ 7349467 (+)
G68475 NA other upstream 4352536 4649200 ~ 4651964 (+)
AMCG00014196 NA other upstream 4872782 4127476 ~ 4131718 (+)
G69406 tgfbrap1,LOC102780916 other downstream 982425 10003058 ~ 10008648 (+)
AMCG00014345 NA other downstream 1127346 10147979 ~ 10151913 (+)
AMCG00014407 LOC107725344 other downstream 4225676 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 4634605 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 5168931 14189564 ~ 14205014 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_08710260_08719614 UBE3A coding CI01000340 null 8710260 ~ 8720007 (+)