AMCG00014338 (gpr45,si:dkeyp-118h3.5,LOC106581986,LOC107602888,LOC107688775)


Basic Information

Item Value
gene id AMCG00014338
gene name gpr45,si:dkeyp-118h3.5,LOC106581986,LOC107602888,LOC107688775
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9993673 ~ 9994671 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014338
ATGATATTTATGATTACCATTGGTTTCTTGGGCAACGCGATCGTGTGCTTGATTGTCTACCAGAAGCCGGCCATGCGATCTGCCATCAACCTGCTCTTGGCAACGCTGGCCTTTTCTGACATCATGCTGTCCCTGCTGTGCATGCCCTTCACTGCGGTGACCATCATTACAGTGGACTGGCACTTCGGTGCCCACTTCTGCAGACTGTCCGTCATGCTCTATTGGTTCTTTGTTCTTGAGGGTGTGTCCATACTCCTGATCATCAGCGTGGACCGCTTCCTGATCATAGTGCAGCGTCAGGACAAGCTCAACCCACACCGGGCGAAAATAATGATCACCACCTCCTGGCTGCTCTCATTCTGCATTTCCTTCCCCTCGGTTGTGGGCTGGACGATGGTTGAAGTTCCGACCCGGGCTCCCCAGTGTGTCCTGGGTTACACAGAATCCCTGGCCGACCGGGCCTACGCGGTGTTCCTGGTTGTGGCCGTCTTCTTCATCCCTTTCGGCATCATGTTGTATTCTTACCTCTGTATCCTCAACACGGTGCGCCGCAACGCCGTGCGCATCCACAATCACGCAGACAGCTTGTGCCTGAACCAGGTGAGCAAATTGGGCCTCACCGGCTTGCAGAGGCCCCAGCAGATGAACGTAGACATGAGCTTCAAGACCCGGGCCTTCACTACTATCCTCATCCTCTTCATCGGATTCTCCGTGTGCTGGCTGCCTCACACCGTGGTCAGTCTGCTGGCGGTTTTCAGCCACCGTTTCTACTTCAGCCCCTCGTTCTACGCCGTCAGCGCTGGCGCTCTCTGGCTCAGCTACCTGAAGACGGTCTTCAACCCCATCATCTACTGCTGGAGAATCAAGAAGTTCAGAGAGGCCTGCATGGAGTTCATGCCCAAGACCTTCAAGATCTTCCCGAAAATGCCTGGCAGGAGCCGTAGGAGGATTCGGCCCAGTAACATTTATGTCTGTAGCGAGCTTCAGTCTTCCGTTTGA

Function

symbol description
gpr45 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human GPR45 (G protein-coupled receptor 45).

NR:

description
PREDICTED: probable G-protein coupled receptor 45

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K08409 GPR45; G protein-coupled receptor 45

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014338 True 999 mRNA 0.55 1 9993673 9994671

Neighbor

gene id symbol gene type direction distance location
AMCG00014335 NA coding upstream 12080 9959233 ~ 9981593 (+)
AMCG00014334 LOC107748535,LOC108247996,LOC104928562,LOC103473625 coding upstream 76884 9914125 ~ 9916789 (+)
AMCG00014337 NA coding upstream 85411 9841023 ~ 9908262 (+)
AMCG00014336 NA coding upstream 184793 9803957 ~ 9808880 (+)
AMCG00014330 NA coding upstream 511618 9475409 ~ 9482055 (+)
AMCG00014343 NA coding downstream 20832 10015503 ~ 10071601 (+)
AMCG00014342 nck2b coding downstream 130483 10125154 ~ 10145702 (+)
AMCG00014344 NA coding downstream 161794 10156465 ~ 10162165 (+)
AMCG00014352 NA coding downstream 234329 10229000 ~ 10242261 (+)
AMCG00014351 LOC107688773,LOC102224404,LOC106959393,LOC103459619,LOC108266990,LOC107099852 coding downstream 313751 10308422 ~ 10318002 (+)
G69384 NA non-coding upstream 83625 9901450 ~ 9910048 (+)
G69326 NA non-coding upstream 617323 9366537 ~ 9376350 (+)
G69232 NA non-coding upstream 1102839 8890586 ~ 8890834 (+)
G69206 NA non-coding upstream 1257734 8734323 ~ 8735939 (+)
G69023 NA non-coding upstream 1857463 8133288 ~ 8136210 (+)
G69428 NA non-coding downstream 59820 10054491 ~ 10054711 (+)
G69431 NA non-coding downstream 60706 10055377 ~ 10055733 (+)
G69457 NA non-coding downstream 229000 10223671 ~ 10224035 (+)
G69499 NA non-coding downstream 498476 10493147 ~ 10493396 (+)
G69540 NA non-coding downstream 842533 10837204 ~ 10838230 (+)
AMCG00014272 tbc1d23 other upstream 2511113 7464503 ~ 7482560 (+)
G68848 NA other upstream 2577079 7413640 ~ 7416594 (+)
G68830 NA other upstream 2644206 7346195 ~ 7349467 (+)
G68475 NA other upstream 5341709 4649200 ~ 4651964 (+)
AMCG00014196 NA other upstream 5861955 4127476 ~ 4131718 (+)
G69406 tgfbrap1,LOC102780916 other downstream 8387 10003058 ~ 10008648 (+)
AMCG00014345 NA other downstream 153308 10147979 ~ 10151913 (+)
AMCG00014407 LOC107725344 other downstream 3251638 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 3660567 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 4194893 14189564 ~ 14205014 (+)

Expression


Co-expression Network