AMCG00014342 (nck2b)


Basic Information

Item Value
gene id AMCG00014342
gene name nck2b
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10125154 ~ 10145702 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014342
ATGACAGAAGAGGTTATTGTTATAGCCAAGTGGGACTACACGGCGCAACAGGACCAAGAACTTGACATCAAGAAAAATGAACGTCTGTGGCTCCTGGATGACTCCAAAACGTGGTGGAGGGTAAGAAATGCATCCAATAAGACGGGCTACGTTCCGTCTAACTATGTGGAACGCAAGAACAGCCTGAAGAAAGGATCCCTTGTAAAAAACCTTAAAGACACACTAGGCCTGGGCAAGACGAAGAGGAAGACAAGCACCCGCGATGCCTCGCCCACCCCCAGCACAGACGCTGAGTATCCGTCCAACGGCAGCAGCGCCGACCGAATTTACGACCTCAGCATCCCCGCCTACGTCAAGTTTGCCTACGTGGCAGAGCGCGAAGACGAGCTGACGCTGGTGAAGGGCACCCGCGTGACAGTGATGGAGAAGTGCAGCGACGGGTGGTGGAGGGGCGGCTACTCGGGGCAGGTGGGCTGGTTCCCCTCAAACTACGttgtggaggagggggaggaggcctCCGCTGACTCGCCTAGTTTCCACTCCTCCCGACAAGGAGCCTCTGTCAGCAACGGCCAGAGCACCAAGGTCCTCCACATTGTCCAGACACTGTACCCCTTCAGCTCAGTCACCGAGGAGGAGCTGAACTTTGAGAAGGGAGAGACCATGGAGGTGGTGGAGAAGCCTGAGAACGACCCGGAGTGGTGGAAATGTAAAAACTCCAGGGGACAGGTGGGCCTGGTGCCCAAAAACTATGTGGTCATCTTCAGCGATGGCTTGGCCTCCAGCAGTTCCCACTCCCCTCAGATAAGCTACACCGGACCCTCCCCCACGGGCAAGTTCGCGGGGAAGGATTGGTACTACGGCAACATCACGCGGCACCAGGCCGAGTGTGCCCTCAACGAACGAGGCCCTAGCGATTTCTCTGTGTCGCTGAAAGCGTCAGGAAAGAACAAGCATTTCAAGGTGCAGCTGGCAGAAGGAGTTTACTGCATTGGCCAGCGGCGCTTTAGCACCATGGACGAGCTGGTTGAACACTACAAAAAAGCTCCCATCTTCACCAGCGAGCACGGAGAAAAACTATACCTGATCAAACCTCTGCAGTGACCCCGGCTCTGGAGTGGCCTACGGCAGACCTATCACAACTAGAAGCCTTAGTTTTGGACTTTCACTTTTACAGAGCAGAGCCATTTCTAAAcactttaattcagtttttttttattattattattattattatttaaaccaataaacaaccagtcagaaaaaaaatgtacaaacatgaaaaaaataaatgaactgtgGGGCTCGTATGGATTTATTTAGCTCTGTTGGTGGctgtttttgtcctttttttattgtttgtatgcCTGTTGTCTTTTAGTTCTTTTGAACTCATTTAACCTTTCCTAAGGTTGGAAGAAAAAATGAAGTCTTCACTAAGTGACCATTTTAAGCACTCGCTTTATGCCTTGGCTGAAAgctccctcactgtagatgttTTACTTGGTTTGGAAGTACTACGAAAACAGGGAGGAGTCCTTTCCAATTACAATAAGACAGTGTTAATCAATTTCAATTTGCTCTCACGCAAGCAGATCTCCTTAGAATCCATCGTGTGGCACTGACTGCACTGCAACGaatcaaaaagaaaatctatagGCGTAGCAGTTGTTGCTGTGAATTCTGTAGCTTTTGCTTCACAGGCAGTTGCAAATATCTCCTAGGGTCTCGAAGCACTCTGATACCAGTGACCAGTACACATGTATTACAGTCCAAAGTTATGATAGAACTGCTTTCATACACAGAAAGATTGTAGGGAGAATTTACTTATTGATCAGTTGAGAAGAAAAGTGATttgtaagagagagagggatctCTCGTAGACAtttaggaaagaaaacaactcAAGCCGAGTTGGGAGTTGAATGTTTGTTGATGTACAAACCAAATGTGCCACCACATACTGCTCGTCTCTTTTGCCCTACTGCTCGTTTCAATTAAAgacaatattatgtatttaattctcaGAGTAACATGTACCTGTAGCTGATTGTGAACACTAATTCATACGATTCATAAAAACGtatcatttttgttattatttaccttggaaatgtctgtttgtttaccAATGAAAGTCTATTGATCATAAGATTTTTCagctgtttaacaaaaaaaagaaaaaaggtataATATGTCTGAATGTTATTGAGCAtcgttatttaattatttccactgtatgtatatttaaaaaag

Function

symbol description
nck2b Predicted to enable receptor tyrosine kinase binding activity and signaling adaptor activity. Predicted to be involved in several processes, including cell migration; regulation of response to endoplasmic reticulum stress; and regulation of translation. Predicted to act upstream of or within regulation of translation. Predicted to be located in cytosol and endoplasmic reticulum. Orthologous to human NCK2 (NCK adaptor protein 2).

NR:

description
cytoplasmic protein NCK2

GO: NA

KEGG:

id description
K19862 NCK2, GRB4; NCK adaptor protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014342 True 2256 mRNA 0.45 3 10125154 10145702

Neighbor

gene id symbol gene type direction distance location
AMCG00014343 NA coding upstream 53553 10015503 ~ 10071601 (+)
AMCG00014338 gpr45,si:dkeyp-118h3.5,LOC106581986,LOC107602888,LOC107688775 coding upstream 130483 9993673 ~ 9994671 (+)
AMCG00014335 NA coding upstream 143561 9959233 ~ 9981593 (+)
AMCG00014334 LOC107748535,LOC108247996,LOC104928562,LOC103473625 coding upstream 208365 9914125 ~ 9916789 (+)
AMCG00014337 NA coding upstream 216892 9841023 ~ 9908262 (+)
AMCG00014344 NA coding downstream 10763 10156465 ~ 10162165 (+)
AMCG00014352 NA coding downstream 83298 10229000 ~ 10242261 (+)
AMCG00014351 LOC107688773,LOC102224404,LOC106959393,LOC103459619,LOC108266990,LOC107099852 coding downstream 162720 10308422 ~ 10318002 (+)
AMCG00014350 NA coding downstream 207143 10352845 ~ 10380421 (+)
AMCG00014357 NA coding downstream 519691 10665393 ~ 10671738 (+)
G69431 NA non-coding upstream 69421 10055377 ~ 10055733 (+)
G69428 NA non-coding upstream 70443 10054491 ~ 10054711 (+)
G69400 NA non-coding upstream 96803 9974424 ~ 10028351 (+)
G69384 NA non-coding upstream 215106 9901450 ~ 9910048 (+)
G69326 NA non-coding upstream 748804 9366537 ~ 9376350 (+)
G69457 NA non-coding downstream 77969 10223671 ~ 10224035 (+)
G69499 NA non-coding downstream 347445 10493147 ~ 10493396 (+)
G69540 NA non-coding downstream 691502 10837204 ~ 10838230 (+)
G69556 NA non-coding downstream 813624 10959326 ~ 10961929 (+)
G69610 NA non-coding downstream 1075368 11221070 ~ 11221274 (+)
G69406 tgfbrap1,LOC102780916 other upstream 116506 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 2642594 7464503 ~ 7482560 (+)
G68848 NA other upstream 2708560 7413640 ~ 7416594 (+)
G68830 NA other upstream 2775687 7346195 ~ 7349467 (+)
G68475 NA other upstream 5473190 4649200 ~ 4651964 (+)
AMCG00014345 NA other downstream 2277 10147979 ~ 10151913 (+)
AMCG00014407 LOC107725344 other downstream 3100607 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 3509536 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 4043862 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 4156745 14302447 ~ 14356868 (+)

Expression


Co-expression Network