AMCG00014352


Basic Information

Item Value
gene id AMCG00014352
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10229000 ~ 10242261 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014352
ATGACGTACCTCAACTACAGCTCCAATATCACTGGAGAAGATCCATCCTCTTTACTCCACCAAGACTGGGATGCAACGTCGGGCTGGCGACTATCCAGGACGGGACATACGGTGGTGTCGGTGTTCCTGGGGTCGATTCTGATCCTGGGCTTCTTCAACAACctggtggtgctgctgctgttctgccGGTTCAGGGCGCTGTGGACGCCGGTCAACATGCTGCTGCTGAACATCAGTGTGAGCGACCTGCTGGCCTGCGTCCTCGGCACCTCGCTGAGCTTCGCCTCCAGTGTGCGGGGCCGCTGGCTGCTGGGCCGGCACGGCTGCCTGTGGTACGGCTTCATCAACTCCTGCTTCGGGATAGTGTCCTTAATCTCCTTGGCCGTGTTATCCTACGACCGCTACAGCACCTTAACTGTCTGCAACAAGCAAGTTCCCGACTACAGGAAGCCCCTCCTGGCCGTGGGGGGCTCGTGGTTGTATTCCTTGATTTGGACAGTGCCTCCCCTCTTGGGCTGGAGCAGCTATGGACTCGAAGGGGCTGGAACTAGCTGTTCTGTGACTTGGACATCCAAATCCCCACAGTCGGTTTCCTACATCATCTGCCTCTTCATCTTTTGCTTAGCTATTCCAGTTCTTGTCATGGTCTATTACTATGGACGTCTCCTATATGCTGTGAAACAGGTGGGGAGAATCAGAAAGACAGCGGCCCGCAGAAGAGAGTACCACATCCTCTTCATGGTGATTACAACAGTGACATGCTACATGCTCTGCTGGTTACCATATGGTGTGGTGGCTTTACTGGCAACATTTGGTAGACCGGGCATTATAAGCCCAATTGCCAGTGTTGTTCCCTCCATCTTAGCCAAGAGCAGCACCGTCTTCAACCCTTTAATCTACATTCTCATGAACAAACAACAACGACCTGCTCACAATGGACCATCCACAGTACAGTCAAAGACTACCGTTATCCAGCTTAACCAGAGGGTGTACAGTAACACAGTAGCATGTACTCCTCAGGTCCCTAGAGATGCTGAAGACCATGGACATGCCACGGcaatgaaggaaaaaacaccCCCAGAGATGACATTCTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014352 True 1095 mRNA 0.53 4 10229000 10242261

Neighbor

gene id symbol gene type direction distance location
AMCG00014344 NA coding upstream 66835 10156465 ~ 10162165 (+)
AMCG00014342 nck2b coding upstream 83298 10125154 ~ 10145702 (+)
AMCG00014343 NA coding upstream 157399 10015503 ~ 10071601 (+)
AMCG00014338 gpr45,si:dkeyp-118h3.5,LOC106581986,LOC107602888,LOC107688775 coding upstream 234329 9993673 ~ 9994671 (+)
AMCG00014335 NA coding upstream 247407 9959233 ~ 9981593 (+)
AMCG00014351 LOC107688773,LOC102224404,LOC106959393,LOC103459619,LOC108266990,LOC107099852 coding downstream 66161 10308422 ~ 10318002 (+)
AMCG00014350 NA coding downstream 110584 10352845 ~ 10380421 (+)
AMCG00014357 NA coding downstream 423132 10665393 ~ 10671738 (+)
AMCG00014356 NA coding downstream 478823 10721084 ~ 10754147 (+)
AMCG00014355 NA coding downstream 524375 10766636 ~ 10801310 (+)
G69457 NA non-coding upstream 4965 10223671 ~ 10224035 (+)
G69431 NA non-coding upstream 173267 10055377 ~ 10055733 (+)
G69428 NA non-coding upstream 174289 10054491 ~ 10054711 (+)
G69400 NA non-coding upstream 200649 9974424 ~ 10028351 (+)
G69384 NA non-coding upstream 318952 9901450 ~ 9910048 (+)
G69499 NA non-coding downstream 250886 10493147 ~ 10493396 (+)
G69540 NA non-coding downstream 594943 10837204 ~ 10838230 (+)
G69556 NA non-coding downstream 717065 10959326 ~ 10961929 (+)
G69610 NA non-coding downstream 978809 11221070 ~ 11221274 (+)
G69681 NA non-coding downstream 1398822 11641083 ~ 11641452 (+)
AMCG00014345 NA other upstream 77087 10147979 ~ 10151913 (+)
G69406 tgfbrap1,LOC102780916 other upstream 220352 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 2746440 7464503 ~ 7482560 (+)
G68848 NA other upstream 2812406 7413640 ~ 7416594 (+)
G68830 NA other upstream 2879533 7346195 ~ 7349467 (+)
AMCG00014407 LOC107725344 other downstream 3004048 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 3412977 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 3947303 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 4060186 14302447 ~ 14356868 (+)
AMCG00014470 NA other downstream 4979653 15221914 ~ 15242333 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037610 tmtops2b coding NC_007120.7 CM002893.2 6118362 ~ 6208067 (-)
grasscarp (Ctenopharyngodon idella) CI01000037_02527352_02576225 TMTOPS2B coding CI01000037 null 2526102 ~ 2576704 (+)