AMCG00014353


Basic Information

Item Value
gene id AMCG00014353
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10652279 ~ 10708018 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014353
GGTTTTCTCTCGCTCATAGTAGGCCTTGATTTGGTCGCAGCGCATCCGCTTCACCAGCCGCTGGCGCTGGCCGAGAGGGAGGGACTCCAGCAAGCACTGatatttcGTCGCAAAATGGCTGCAGCAGCGGAGTCTGCAATCACAACTCCGAGTACTGTCGCCTCTCAAGTTCCCTTTGGCCACTTGTGTTCAACTTTGGAaaaaattcagaaaacaaaaaccagaccAGAGAAAACTAAACATCTGAAAGACTTTCTTGAATCCTGGAGAAAGTTTCATGCTGTGCTCCACAAGGATGATCCAAACACCACTGACTCCTTTTACCAGGCAATGCGTCTTATTGTTCCTCAGTTGGAACGTGAGAGGATGGCATATGGGATAAAGGAAAACATGCTTGCCAAACTATACATAGAAGTTTTAGGTTTGCCAAAGGATGGGGCAGAGGCAAATAAGCTCCTGAAATATAGAGCTCCAACTACATCACAGGGAGAGGCAGGGGACTTTGCTGTCATGGCCTACTTTGTGCTTAGAAAAAGATGCCCAAACCATGGAAAGCTAACCATTAAAGAGGTGAATGATTTCTTGGATTCTGTCGCTAGTAACAACGCAGGAAAACAGAAGGACCTTGTGAAAAAGAACTTGCTGCAGCTGATTACCCGAAGCTCAGCTCTGGAGCAAAAATGGCTCATCCGTATGATCCTCAAAGACATGAAATTAGGAATCAGTAAAGAGACCATCTTCCAGATATTTCATCCAGATTCAGCAGAACTACACAATGTGACCACAGATCTCGAGAAAGTGTGTAGACAACTGCATGACCCTTCCGTTTCTCTCACTGATGTCTCCATCGGACTGTTTTCTCCCTTCAAACCTATGCTGGCTGCTGTTGCAAACTTAAAGCAAATTGAAAAGCAGATGAACAACCAGAGTTTCTACATCGAAACTAAGCTGGATGGTGAGCGCATGCAGCTGCACAAAGATGGGGATGTGTATAAGTACTTCTCACGCAATGGGTATGAGTACACACAACAGTTTGGGGCATCGCCATTGGAGGGATCACTGACTCCTTTTATACACAACGTCTTCAAGCCTCACATTGTCAGATGCATCCTAGATGGTGAGATGATGGCGTATAATCCCACTGCACAGACCTTCATGCAAAAAGGTAACAAGTTTGATATTAAGAGAATGGTTGAGGATTCTGAGTTGcagacatgtttttgtgtgtttgacGTGCTATTGGTGAATGACCAGAAAATGGGACACGAGACACTAAGAAAACGCTACGAGACCCTTCAGACCACCTTTACAGAAGTACAAGGTCGGATTCATGTTGTACACAGAACTGAAGCAAGGACCAAGCAGGAGGTAGTAGATACCCTCAATGAAGCAATTGACAACAGGGAAGAAGGAATTATGGTAAAGGATCCCTTGTCTGTTTACAAACCAGATAAGCGTGGAGAGGGATGGCTCAAGATCAAGCCAGAATACGTGGATGGCCTTATGGATGAACTTGACCTTTTGATCGTTGGAGGATACTGGGGGAAAGGCATGCGAGGTGGAATGATGTCCCATTTTCTGTGTGCTGTTGCTGAAGCCCCACCACCTGGTGAAAAGCCATCTGTGTTTCATACTCTTGTCCGTGTTGGTTCAGGTTATACGATGAAAGAGCTCTATGACCTGGGCCTAAAACTGGCAAAGCACTGGAAGCCCTACCGTAAGAAGGATCCCCCCACATCTATTTTGTGTGGCACGGAGAAACCAGAAGTTTATATCGACCCTTGCAACTCAGTGATCGTTCAAGTGAAGGCTGCTGAAATTGTGGACAGCGATATGTATAAGACAGAATGCACTCTGCGCTTTCCAAGGATAGAAAAAATAAGGGATGATAAAGAGTGGTACGAGTGTATGACGCTGAAGGACCTGGACAACTTCCGTGACAAGGCTTCAGGAAAGCTCGCATCTCGGCACGTGCGTTTAAACGACGATGAACCCGACAAAAAGAAACGCAAGATTGTTTCAAAACCCAAGAAAGTCATTGGGATAATTGACCACTTCAAGTCACAGGACCTTTCCAGGGTGAGCAAAGTGTCAGACATGTTTGAGGATGTGGAGTTCTGTGTCATGACCGGAAATGAGCAGCATTCAAAGCATGAGCTTGAGAAAGTAGTTGCCAAATGTGGTGGAGTCATAGTTCAAAACCCTGGTAAAGATACCTACTGTGTAATTGCTGGCGTGGAAAACATGAGGGTAAAGAATCTGATTTCTGCAAACCAATATGATGTAGTTCAGGCTGAATGGCTTCTGGAGTGCTTGGAGAAGAGGCAGTGTGTGCCATGGCAGCCTAAACACATGATCCACATGTCTCCAGCCACACAGCAACACTTTGCGAAAGAGTACGATCACTTCGGGGACAGCTTTTATGCAGACACAGATGTGAAAGAGTTAAGGGAGGTCTTCAGTAGGATCAGTGAAAAGGAAACGCAGATCCCTTCAGATGCCATTGCTGATTTAGAATTGAGGTATCATTGGGATGATCTCCCAACCAGTATGTTCAGGCAGTTTAAAATCTTTGTAGATCGCTATGCTGTCATTGGAGATCCTAGCAGCTTAATAGGTGGGACAAGTTTAGACATACGAGCCCTTGAGCTCAGGTTTCATGGAGCAAATGTTGAATCCGAGCTTGTGGAAGGGATTTCTCATGTTATTGTGGGAGATGAGGCTCGCATTTTAGACTTGAGATCCCAAAGAAGACTGTTTAGAGAGAAGTTTAAAATTGTGTCAGAATCGTGGGTTGTGGATTCAATCAAAGCTGGACACTTGCAAAATGACAATGACTActtagtttaaaatgttaaactaagCTGCTGCACTATAGCCTTCCTGACTTCACACAACAgcctttttatttcagttttaaatagcATTACATAGTTACACTTCATATTTTTAAGAGGAAACAAATATGTGGTATAAATTAGTaatatggaaataataataatggtgtatactataacaatgtaataggcatgcattatattattttcttacagtattgcgattttcaaaataatgtgtattgaATAACACTAATGTTTTCAAAGCCTTAAATCACAGTAGATTTTCACCTGATGATTCAAGGAAACCTTTTTATAGCATGTGTGTTAACCTTAATTCGTTGGCACTCAGTTGTTGAAACCATAGAAGTGAAGTATACTGAAATGGTTAGATAATAATATCTAGCCTACATCATTgtgatttgaaaacaaaacagtgtaaGATTTAGGTCATAGACTGCATTAGTAGGAAAGCAGCTCagggaaacaaaatgtgttttttgttaccTACAACGCAATTGTATATGCTAGTCAGACTAAACTTTTAGTAGttagacatgtttttattttttttatgtgcctTTGGATGTGGAGTGATATCCTAATATGGAAATTTTTTAtcaaacaagaaattaaatataattttgcttgTATTGTTAAGGGATGAACTATAAACTCAGCTGTTTTAatgttcatgttgttttttaattttattcatcATATTTAAACATAAGCTTTTAATCAAATTGTAACATGATTTAGGCAAGACATTTTGTCATGCTGCTGTTTTGGAGCTTGGACTAATGtcaataataaatgtgtgaagtaatcaaata

Function

GO: NA

KEGG:

id description
K10777 LIG4, DNL4; DNA ligase 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014353 True 3673 mRNA 0.41 2 10652279 10708018

Neighbor

gene id symbol gene type direction distance location
AMCG00014354 NA coding downstream 125310 10525613 ~ 10526969 (-)
AMCG00014347 NA coding downstream 324048 10318244 ~ 10328231 (-)
AMCG00014349 NA coding downstream 350918 10300003 ~ 10301361 (-)
AMCG00014348 NA coding downstream 395904 10241006 ~ 10256375 (-)
AMCG00014346 uxs1,LOC107721615,LOC107551074,LOC107676432 coding downstream 454528 10192629 ~ 10197751 (-)
AMCG00014358 NA coding upstream 191990 10900008 ~ 10903196 (-)
AMCG00014359 col4a1,LOC107715912,LOC107557928 coding upstream 253231 10961249 ~ 10974117 (-)
AMCG00014360 NA coding upstream 266447 10974465 ~ 10991144 (-)
AMCG00014364 NA coding upstream 380729 11088747 ~ 11096433 (-)
AMCG00014368 NA coding upstream 396960 11104978 ~ 11121831 (-)
G69495 NA non-coding downstream 173270 10420180 ~ 10479009 (-)
G69483 NA non-coding downstream 311333 10337887 ~ 10340946 (-)
G69427 NA non-coding downstream 598004 10053737 ~ 10054275 (-)
G69396 NA non-coding downstream 716881 9935175 ~ 9935398 (-)
G69394 NA non-coding downstream 734944 9916845 ~ 9917335 (-)
G69528 NA non-coding upstream 31398 10739416 ~ 10739930 (-)
G69530 NA non-coding upstream 58582 10766600 ~ 10768258 (-)
G69531 NA non-coding upstream 65165 10773183 ~ 10773422 (-)
G69532 NA non-coding upstream 69033 10777051 ~ 10777441 (-)
G69535 NA non-coding upstream 84901 10792919 ~ 10793146 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 591049 10058097 ~ 10061230 (-)
AMCG00014340 NA other downstream 634528 10001134 ~ 10017751 (-)
AMCG00014328 mpc2,LOC107673680,LOC107695492 other downstream 1335112 9305239 ~ 9317167 (-)
G69156 LOC107673457,LOC105895139,LOC107711008,LOC106521848,LOC107716961,LOC101064050,LOC103356925 other downstream 2268055 8383285 ~ 8384224 (-)
AMCG00014298 NA other downstream 2493689 8155932 ~ 8158590 (-)
G69537 NA other upstream 88698 10796716 ~ 10798147 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other upstream 417011 11125029 ~ 11137086 (-)
AMCG00014374 NA other upstream 951993 11660011 ~ 11667537 (-)
AMCG00014412 LOC106574775,LOC107704546 other upstream 2379590 13087608 ~ 13133751 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 6014055 16722073 ~ 16737877 (-)

Expression


Co-expression Network