AMCG00014363 (LOC106582132)


Basic Information

Item Value
gene id AMCG00014363
gene name LOC106582132
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11097567 ~ 11105850 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014363
ATGCAATGGGGAAGGGGCACTGTAGTCACTTGCTTTGTGACATTAATCGTGTCGGTGGCTGTAACTCTCTTCTGTATGCACGATGAAGTGCTCGCCACGACGCAACCCGAGGAGCAGAAGCCAAGCCCGGATCGGGTAGATCTCAGATCGCAGGCCTGGTCTGTTGTGGACCACTATGTAGTGCGCCTGTGTGCAAATTCAGACTTGGAGACCAGAGCTCTGTTGGACATCTGGGGCGAGCAGGATGTGCAGACGGCGCTGGACGGCAACTTTCGCAACAGTCACGTTTACCGCGATGTCGCCTGCAGGCTGGGGGAGATGGGCTTTGACAGGACGCCCGAGCAGTGCAGGATCCGCGTCAAGGGCTTGAAAAGACAGTACTACCAGGCGAAAGAGGGCATCAAGAAGAACGGGCACTACCGCAAGATCTGCAAGTTTTACGACGAGATGGACAGGATACTGAGTAACAGACCTCACCTCGACCCCCAGGACATGATCGACAGTGTGGCCATAGGGGATGACGCGATGGACGGCACCGAGGAGGAGGGTGATGGCATGGACCACCCGCAGGAGGCGTACATCATGGAGAGCACCGGGGAATGCTCCTATGCTGATCACCCGGTGAAGTTGGAGTATCCCTCCTTTCCCATCCCAGTGCCTGTGAGCAACAGTGCAAGTACAGGACAGAGGCAAAACAATGCCCAGAACAGCACCCCCTCCACAACTCGTACCAAGAGGTCCAAAAAGCGCTACACTAATCTGTCCCTGGATAAGCTGATGGAGAAGTTCCTGGAACAGAGCATGGAGGCAGAGGAAAACTTCTACAAGTACGAGGAGCAGCGGCTCAAAGTGGAAGACAAGCGGCGCGAGGCGGAGCATTCCCGCGAGCTCCAGATGTTGCAAGTGCTGGGACAGATGTTCGCCAGCATCGCCACCCCTGCCCCCGGGCGCCCACAGACTGCCCCCTCTGCCCCCCAGCATCGCCCGCACAATCACCACCCGGCCGAGCACAGTAATCGCAACATGCCACCGTCGGCGCCATCCCAGCCCATAGTTATTGAGAGAGCCTTCTCACTCAGAAGTCCATCACCAAGGAATATGGAAAATATTCTTCCTCTCGTGAAAAATATCGTTCCTCCTTTGACATCAAAAAAGCATAAAGGTCAAGATGGAAGGATTGGTATCATAGGAGGATGTCAAGAGTACACAGGAGCACCATATTTTGCAGCTATTTCAGCTCTTAAAGCGggGGCAGATGTGTCTCATGTATTTTGTACCAAAGATGCTGCAACTGTAATAAAATCATATAGTCCAGAACTGATCGTACATCCAATCCTcgaCAGTCCAAATGCAGTTGCAGAATTTGAGAAGTGGCTGCCAAGGCTTCATAGTATAGTAGTTGGACCGGGTTTAGGCCGAGATGATAAGCTGCTTGAAAACGCTAAGGGTATCATTGGCAAGTCCAGGTCAAGAGATATCCCAATCGTTATTGATGCAGACGGATTGTGGCTCGTATCCCAGCATCCATCTATCATTCAAGGCTACCAGATGGGTATTCTAACTCCGAATGTTATGGAGTTCAGTCGACTGTATGAAGCGGTGTGCCAGGACTCCATGGACAGCAGTgacaaaaagagaaatgtcATGCGTCTCAGCGAAGCCATGGGAAACCTGACTGTTGTCCTGAAAGGCGAAGAGGACATCATTTTTGATGGAGACAAAATGGTGGTCTGCAGCCATGAAGGCAGCAGCCGCAGATGTGGGGGGCAGGGTGACCTCTTGTCTGGCTGTCTCGGAGTCATGGCACATTGGGCATTTATGTCAACGACCGAAAAAACAAATGGAGTCAAGCCCTCTCTCATCGCTGCATTCGGAGCCTGTAGTCTCACTCGCCAGTGCAACCGACAAGCTTTCCACAGGCACGGCCgggccaccaccaccaccgacATGATCGCAGAAATCGGCGCGGCCTTTAAAAAACTTTTTGAGAGTTAAACCTGGACAGGTTTCAGCACAGGGAAAGACAAAGGTCACCAGCCTTCCTGCACGTGCCGTAGTTAAGTTTGAGGTGCAACATACTTTGACGTGCGGCAGCAAGCTTAATTAGCTCTTTCGAAGTCAAAAGACCTTTTAGCAGTAGACTTTCTAAACAACCGTAAGAAAGTAACTTCTTGAGTGAAAGGAGAACTGCAGAGGTTTCTCAACAAGAGCAGATTTGAATGGTGTTCAGTGTCACAATTGTCAATTAATAAACTGGGCTTCCCACACATTTGAATCATCACTATAAAACTGAGGCCAGAGAGGATGTCTTGCCATCTGTTCCCACCCATTTCCACAGATTGCTCcatataataaatgcaattgcaatatttcccttttaaaaaaacagtacagtggTTCAGTATTCTGATTGAGATGTTTTAAAGTGTGTAACGTTTGGAGTTTCCACAGCGTTTTCAGATATACAGGTTTTTTGAATTgggttttttcatgttttatgaatTATCTGTAAATTCTGTGGctttgtatatacacacaccatagATAGATAATAGGATACAAAAGTGGGTTCACTTGAGGTCTGGTAAGAAGTTGCTCATGGATTTTAACAAGTGGCACAGTAAGCAGTACATCTTGTTTGTTGTTCATGCAACccttacatatatatttaaaggtgtttttgttgtgtttgagaTCTTTGTTACCTATTTGACACCTTTTTTGAAGTATTACAGTATTTGCTgtgaaatgtttatgaaaagGATGGATCAAAGGAAAACACAGAGGGTTTTAAGGAAACTCccacttaaaacaaaactgtgtagtttatcaatacaaatgtgtttatggACAAATTAAAGCAGTCCattcaaaatagttttaaataagtGCAGCACTCTTATTTTTATACACCCCCCCCAAAACTGTGATCTTTAGTTTTTTCAGCCTATCCCATTTCAGGATATGCCTTTCATCTCTGTGTGGAGTTACTAGATAATTGAA

Function

NR:

description
PREDICTED: ATP-dependent (S)-NAD(P)H-hydrate dehydratase isoform X5

GO: NA

KEGG:

id description
K17757 CARKD; ATP-dependent NAD(P)H-hydrate dehydratase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014363 True 3003 mRNA 0.47 13 11097567 11105850

Neighbor

gene id symbol gene type direction distance location
AMCG00014362 NA coding upstream 10965 11061595 ~ 11086602 (+)
AMCG00014355 NA coding upstream 296257 10766636 ~ 10801310 (+)
AMCG00014356 NA coding upstream 343420 10721084 ~ 10754147 (+)
AMCG00014357 NA coding upstream 425829 10665393 ~ 10671738 (+)
AMCG00014350 NA coding upstream 717146 10352845 ~ 10380421 (+)
AMCG00014361 NA coding downstream 19549 11125399 ~ 11129360 (+)
AMCG00014369 arhgef7a,LOC107668898,LOC107712280,LOC107569023 coding downstream 72111 11177961 ~ 11220774 (+)
AMCG00014370 sox1a,LOC105893305,LOC106586732,LOC101064967,LOC107692134,LOC107718482 coding downstream 286539 11392389 ~ 11393405 (+)
AMCG00014371 tubgcp3 coding downstream 434582 11540432 ~ 11561870 (+)
AMCG00014373 NA coding downstream 500118 11605968 ~ 11640460 (+)
G69556 NA non-coding upstream 135638 10959326 ~ 10961929 (+)
G69540 NA non-coding upstream 259337 10837204 ~ 10838230 (+)
G69499 NA non-coding upstream 604171 10493147 ~ 10493396 (+)
G69457 NA non-coding upstream 873532 10223671 ~ 10224035 (+)
G69431 NA non-coding upstream 1041834 10055377 ~ 10055733 (+)
G69610 NA non-coding downstream 115220 11221070 ~ 11221274 (+)
G69681 NA non-coding downstream 535233 11641083 ~ 11641452 (+)
G69722 NA non-coding downstream 613468 11719318 ~ 11722767 (+)
G69739 NA non-coding downstream 678015 11783865 ~ 11784083 (+)
G69778 NA non-coding downstream 1494254 12600104 ~ 12600313 (+)
AMCG00014345 NA other upstream 945654 10147979 ~ 10151913 (+)
G69406 tgfbrap1,LOC102780916 other upstream 1088919 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 3615007 7464503 ~ 7482560 (+)
G68848 NA other upstream 3680973 7413640 ~ 7416594 (+)
G68830 NA other upstream 3748100 7346195 ~ 7349467 (+)
AMCG00014407 LOC107725344 other downstream 2140459 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 2549388 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 3083714 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 3196597 14302447 ~ 14356868 (+)
AMCG00014470 NA other downstream 4116064 15221914 ~ 15242333 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000037_03811261_03823037 CARKD coding CI01000037 null 3811261 ~ 3823115 (+)