AMCG00014373


Basic Information

Item Value
gene id AMCG00014373
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11605968 ~ 11640460 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014373
tgtatagatgAAATCATGCAGCAAGAAAGCAGTCCGCTGTGCGCTGTGGATATCACAGATGACCTGAATAAACAGTTTGCCTTCTTGTCAGGAGGACGAGGAGAAAATGGCAGCCCCATCATCACTTTCCCAGAATTCCCTGCCTTCAGTGAAATCCAGGAGAGAGAGTTTCACAATGTCCTGACTTATCTCACTAGCATTCCCAGCCTCCAAGCTGCCGGGGTCGGGTTTATCCTCATCATTGATCGACGGCAAGACAAATGGACCTCTGTGAAGGGCACCCTGCTGCGCATCGCGGGCTCATTCCCAGGGAACCTGCAGCTAGTCCTGGTTCTCCGCCCCACCACGCTGCTCCAGCGCACCCTCTCCGACATCTTGTTCAAGTTCAACAAGGATGAGTTTAAAATGAAGGTCCCAgtCATCATGCTGAGTTCAATAACAGAACTGCACAGTTACATCGACAGGACCCAGCTGACCCAGGAACTTGGAGGCACCCTGGAGTATTGCCACGAGAAGTGGATTTCCCATCGCTCAGCTATTGAGGGTTTTGCTCTGATGGTGAAGAAGACTGCTCAGACACTGCAGTCTTTTGGGACGGAACTGGCGGAAACAGAACTGCCGAATGATGTCCAGGCAACCACAAACCTTCTAGCAGTACACTtggaaaagaaagacaagatGAAGGAAGATTTACAGATAGCCCTAAACCAAGGAAACAGGCTTCTGGAAAGCATTAATGAACCAATTGTGAAAGATCCTGATTATAAAATGAACCAAGATGAGATGGAGAACCTGGCTACAGTGCAGAGGTTGCTCTCTCAGCTGGATGAGACCGAGATGGCGTTTGACGAGTTCTGGGAAAAGCATCACACCAAGCTGCAGCAGTGCCTGCAGCTCCGGCACTTCGAGCACAGTTTCCGGGAGGTGAGGGCACAGTTGGACCTCGTGTCAGACCGCCTAGCGACATTCTCAGACGTGGGGAACAGCCCTATACACGTGGAGCATATCGTACAAGATCTGTGCAGCTATGAGGAAAAAGCCTGTGAGGTTCTGGACCGGGCGAAGGACCTTGCCTGTGAGGGAGACCAGCTGATCGAGGACAGTCACTACGCTGTGGACTCCATTCTGCCCAAATGTAATGAGCTGAGGAGCGTGACCGAAGAGCTGGTGGAAGACATGAAGGCCAAGAAGGCCCTGCTGCACAAGTCAATGGAGTTGCACCAGAGTTTGGAAAAGGCTGTAAAATGGTACGATGAAGGGATCTTCCTCCTGGCCTCTCAGCCTGTGGACAAGTGTCAGTCCCAGGATGGAGCCGAATCTGCCCTGCATGAGCTGGAGAGGTTTATGGACACAGCCGCACAGCACAAACTCCAGGATCTCGGCGCCATCTGGAGGGATTATGAGACAGTACTCAATCAGGACTTCCGGAGTTTTTCAGTGGCCCTGTCTCGCTGTCTGGCCCTGCAGGACCACGTGGAGAGAGTGTTCCAGAAGCAGGAGGGGATGGAGGAGATGTTTGAGAAGCGACGAGTGAGTCTGAAGAAGCTGGCGGCCAAGCAGACCCGCCCGGTCCAGCCGGTGGCTCCTCGCCCTGAGGCCTTCCTCaaatctcctctctcctccccagGCTATCCCAGAGATTCTCCGAAGAATTCGCCCACAGACAGTGATGCTCTTCACAGAATAAACTTCAGAAAGGGGGATCATCATTCGAGCAGTGGAGGCCGAAATGACTGTCTTTCGGAAGAAGAGGAGAATTTAGCCGTGCTGAGACGGCACGTGATGAATGAGCTACTGGATACTGAGAGGGCCTATGTAGAAGAactattgtgtgtgttggagGGATATGCTGCCGAGATGGAAAACCCCTTGATGAATCATCTCATGCCAGTAGGACTGCAAGAAAAGAAATTCATTCTCTTCGGAAACATGACTGAAATCTACGAGTTCCATAAAAGGATATTCCTCCGGGAACTGGAGAATTACACAGACTATCCTGAACTCGTAGGAAGCTGTTTCCTCAAAAGAATGAAAGATTTACAGATATACGAGCAGTACTGTCAGAATAAACCCCGATCTGAGAGCCTGTGGAGGCAGTATTCGGACTGTGCCTTCTTCCAGGAATGTCAGAAAAAGCTGGAACATAAATTAGGCTTGGACTCCTATTTACTGAAACCTGTGCAAAGGATAACAAAATATCAACTGCTGTTAAAGGAGCTCCTGAAGTACAGCAAGAACTGTGATGGGGCAGGGGACCTGCAGGATGCGCTGGCGGCCATATTGGGCATTCTGAAGTCAGTCAATGACTCCATGCACCTGATTGCAATCACAGGATATGAGGGGAATCTCAACGACCTGGGAAAGCTGCTGATGCAGGGCTCCTTCAGCGTGTGGACCGAGCACAAGAAAGGCCACTCCAAGGTGAAGGACCTGGCGCGTTTCAAGCCCATGCAGAGGCACATCTTCCTGCACGAGAAGGCACTGCTGTTCTGTAAAAGGAGGGAGGAGAACGGCGAGGGCTACGAGAAGGCCCCCTCCTACAGCTTCAAGCATTCCCTAAATATGACTGCTGTGGGAATCACGGAAAATGCAAAGGGAGACAACAAAAAGTTTGAAATCTGGTGCAATGCAAGAGAAGAAGTGTACATTGTGCAGGCTCCTACACAAGAAATCAAAACAGCGTGGGTAAATGAAATCAGGAAGGTGCTGACGGGGCAGCTCAAAGCCTGTAGGGAAGCAAGCCAACAGAAGTCCTCAGACCAGGTGTTTCAGTttccctcacctaccactgctTCTGTCAACTCGAGTAGTCCTTTTAAGAACAATCAGAGAGGCACGAAGAAAGGAGATGAGAAGAGGACCGAACCTGCCAGTCCGGATGCCTGTTTGAATTCCTCACCTTCTCCAAAGCATCCTGACAAAGGAAAAGATGAATCTGCAACTAGCCCTACTTCAGAGCGCGCTGCGGTAGCTAAAAAACGTTTCACTTTACAGGGCTTCAGCAACCTCAAGAGCCAGAAAGGCTGGGTCAAAGCCTCCCATTCACTCGACGCCTCTGAGGAAAACGAGGGCTACTCCAGTGCCGAGGAGCCGCTGAACTCCTCTGACGCAGAGGAAGAAGGGGGTAAAAAACTGACTCCTGGGAAGTATACTGTGGTGGCCGATTATGACAAAGGAGGGTCGGAGCAGTTGACGGTGAAGAGCGGAGAAATGGTGCAGCTGATTCGAGAGGGAGAAGATGGGCACTGGTTTGTTCGTAACCTTAGCACCAGCAAAGAGGGATGGGTCCCTGCTGCAAACTTACTGACGTTGATAGGAGACTCAAAATCATCTCAATCCCTGAGCAGCTCAGAATCGGGGAGTGGGTCCAGTAACCTGAGCACGTCCTCCAGCTGCAGTGAGACGTACACTCCCAGCAGCTTCTCCGACATCAAGGGCTGAGGGCCGACCCACCTCCACAGCTTCACACATCCTGCAAAGCACCCACACtttttatgcatgtttttatttcctctcaCCTTGCAAGTCAGGTCACTGAACTGGAATTAGGCATTACTGATTTTAAAGAGATGTACATTAGGAAAAACAAAGCGTCGCTGGCCCCTCGTACTAATGCCGGAAATGTCCGTCTGAGATGAACTCACCCTGCAGACAGCCAGTGTCTGCACCGGCCAGGCAAGTGATTGTGATTTGATCAAGAGCCTGGGTTACCGTATGTAAACAAAGAccatttttgttatattttttattatttttccagggGGGAGGTTATGATTTggttaacaaaattaaaaaaagcctAATATATTGTCTGAGAGATATAACAAATCATATGCATATGCTTGCCTGTCTGCTCtagtatgatttttattttattttattttttgcctgttgtaaaatgcagtttcacaCATTTGCACAGAGCAGGGACGGTTCTTACACTTAAGCCATTCCAGTCAAGACTGAATCCCACTGTGCCCGTTTCTGTGCCAGAGCTGCTCTCTGAGCCGCTGTTGTACACGGTCTGTGAGCAGCACAAAAGGGATCCGAACactgattttagttttaattagcAATTCTGTACCCTTCAGTTTGAGTAATATTTCAGAAGCAACTACTGTTTACAAAGTATTGCAGTTTGATAACTTTTTGATACAGAGTTGATGTTCTCTTGATACGTTGCACACAGAAACTTAGTCAAACTGCTCTTCAGGAAAATGCAACCATTTTTAATTGTCAATAAGGAGTCGTGAAGTCTGATCTGTTGCTGCTTACATCGAGCTTTATTCATAAAGAATAGGGAatagacatttatatatatatatatatatatatatatataaaatctttgaaacggatatataattgtatttatttattgtaaaacagaaaaaatgctttataagggaaatttgtataaatattacCTCATTTTTGTtctcaaaaaatatattgtatataagaCACATTGATTAAAACTTGTGAATCATTGTCTGGAAATGCTTTTAGATTCTGCCATATATTGCAATGCTTAATTTCTATGTCTGCGTTGTATATTGGTATCTGGTATCTGTATATAAAGCAACGTGTATTAAGGTTAGACAGTTCTTTATTCAATTATGTCTACACCCAGATATGTCCCAATGTATTTTAGAATTGCCAGGAAACGTCATTACAAGGGTAAGTTTGATCTATGGAAGAAAGCTgctatttacacattttcagagTAACTCAGAAAGTCTTAACATGTTTTATCTCAGTCTTATCTGTAATAATTTACTCTGTTGGTTTTATTCATGTTACTTGGCCAAAATTATTGGGACATGACTATAagaattgtttaaaacaaagaatgaTTGGTTAGGTTtgaacaaatgtatacaaatgcatttaaaaactaacaaatatgTGTAAAGGCATCTTTCCAAAGTCAATTAATTGCACAAGTGAGTCGACATTTCTGGAGGTTTATATGAAAAGAATGTAAATACATGTACAGTTTGTTTCTGATGCATCATAGAAACTAATTTTTAAAGTCTAATTTGCTACTCTGTGGATCGTTACCTGCTAAATGGTTTATATTTGTGAAATTGTTGACCAGCGTTTTTTCAGCAATTGCCCAAGACCACATAGCTTAGTGTTTGGTATAGTCCTTACAATAACAGTTGGTTCCAGCAGGCCTAAAAAGGTCATCCTTTCACATAGGGAATGTTCTGtaagataatgtatttttctttttgatttgcACTCTGTAAGTCAATCTGATACTGatgttattgtttattgcactttatgCAGCACATTGCGgcacatttagtttttctatggtaattgaattatgaaaaaatgtatgtcaatTGTCCTTaattgtatgaaaacaaatgacttGAATAAATGAAACTTAAATGGGTTTTCAA

Function

GO:

id name namespace
GO:0035023 regulation of Rho protein signal transduction biological_process

KEGG:

id description
K20685 MCF2, ARHGEF14_21_22; guanine nucleotide exchange factor MCF2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014373 True 5417 mRNA 0.45 30 11605968 11640460

Neighbor

gene id symbol gene type direction distance location
AMCG00014371 tubgcp3 coding upstream 44098 11540432 ~ 11561870 (+)
AMCG00014370 sox1a,LOC105893305,LOC106586732,LOC101064967,LOC107692134,LOC107718482 coding upstream 212563 11392389 ~ 11393405 (+)
AMCG00014369 arhgef7a,LOC107668898,LOC107712280,LOC107569023 coding upstream 385194 11177961 ~ 11220774 (+)
AMCG00014361 NA coding upstream 476608 11125399 ~ 11129360 (+)
AMCG00014363 LOC106582132 coding upstream 500118 11097567 ~ 11105850 (+)
AMCG00014376 cab39l,LOC103356757 coding downstream 3568 11644028 ~ 11659546 (+)
AMCG00014378 NA coding downstream 27696 11668156 ~ 11678181 (+)
AMCG00014377 NA coding downstream 48773 11689233 ~ 11696926 (+)
AMCG00014381 NA coding downstream 70938 11711398 ~ 11711931 (+)
AMCG00014382 NA coding downstream 119441 11759901 ~ 11761901 (+)
G69610 NA non-coding upstream 384694 11221070 ~ 11221274 (+)
G69556 NA non-coding upstream 644039 10959326 ~ 10961929 (+)
G69540 NA non-coding upstream 767738 10837204 ~ 10838230 (+)
G69499 NA non-coding upstream 1112572 10493147 ~ 10493396 (+)
G69457 NA non-coding upstream 1381933 10223671 ~ 10224035 (+)
G69681 NA non-coding downstream 623 11641083 ~ 11641452 (+)
G69722 NA non-coding downstream 78858 11719318 ~ 11722767 (+)
G69739 NA non-coding downstream 143405 11783865 ~ 11784083 (+)
G69778 NA non-coding downstream 959644 12600104 ~ 12600313 (+)
G69833 NA non-coding downstream 1339799 12980259 ~ 12982434 (+)
AMCG00014345 NA other upstream 1454055 10147979 ~ 10151913 (+)
G69406 tgfbrap1,LOC102780916 other upstream 1597320 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 4123408 7464503 ~ 7482560 (+)
G68848 NA other upstream 4189374 7413640 ~ 7416594 (+)
G68830 NA other upstream 4256501 7346195 ~ 7349467 (+)
AMCG00014407 LOC107725344 other downstream 1605849 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 2014778 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 2549104 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 2661987 14302447 ~ 14356868 (+)
AMCG00014470 NA other downstream 3581454 15221914 ~ 15242333 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G336938 NA non-coding CI01000119 null 1825100 ~ 1878293 (+)