AMCG00014376 (cab39l,LOC103356757)


Basic Information

Item Value
gene id AMCG00014376
gene name cab39l,LOC103356757
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11644028 ~ 11659546 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014376
CTTCAAACTCGCTTCCGAGACGGAAAATCCCGAGTTTATGCCTAGTTATCCTGAAATTTAACCGGCTAACCTATTTATCCACGATAAACGGACCCGTTTGCTTTTTTGTGGTTCCAAACCTTCCTTTGCACACCAACAGCCACGTCAAGCAGCTATAATATAGATTAAAGCCACTTCCCAAAACCAAGTAGCGGTACACAGCACATCTAGGTGACGCGGACAGTGCTGTAAACACTGCGTCCTGCCTTCTCCAAACAGCGCAGCGTTCAGtgcgctcacacacacattcctgtgACGTAGAGCTCAGTGTACACACATCCCTCGGACGTGGAGCTCAGTGTACACACATTCCTCTGACGTGGAGCCCAGTGTACACACAGCTGGTGTGACCAGAAAAGGCTGTTCGATTACATTGAGAGagacaagcaagcaagcaagcaggATAGCCGagtgaaaaacacaagaaaataaaccctTGCACTGTACTCAAGTGAGGCACACAGACCTATCAAAATGCCACTGTTTGGTAAATCTCACAAGAGCCCAGCTGATATCGTGAGGActctaaaagaaaacatgggGATTTTAGTCAAGCAGgacaagaaaacagaaaagGCTTCAGAGGAGGTGTCAAAGTGTCTGGTGGCGATGAAGGAGATCCTGTACGGCACCAACGACAAGGAGCCCCACACCGAGACCGTGGCCCAGCTGGCACAGGAGCTCTACAACAGCGGCCTGCTCATCTCCCTGGGGAAGAAAGATGTCTGCCAAATATTCAACAACATCCTGAGGAGACAAATTGGCACACGCAGTCCAACAGTGGAGTATATATGTTCCCATCAGCAGGTGTTGTTCATTCTCTTAAAGGGCTATGAGACGCCACAGGTGGCCCTGAACTGCGGCATCATGCTCCGCGAGTGCATCAGACACGAACCCCTGGCCAAGATTATCCTGCACTCTGAACAGTTCCAGGACTTTTTCAACTATGTGGAAATGTCAACATTTGACATTGCCTCTGATGCCTTTGCTACATTTAAGGACTTGCTCACGAGACACAAGGTTCTGGTGGCAGAATATTTAGAACAGAATTATGACGCAGTGTTTGGAGACTATGAAAAGCTTCTGCATTCAGAGAACTACGTGACCAAGAGACAGTCATTAAAGCTTCTAGGAGAGCTGCTGCTTGACAGACACAATTTCACGGTGATGACGAAATACATCAGCAAGCCGGAGAACCTGAAGCTGATGATGAACCTGCTGCGAGACAAGAGCCCCAACATTCAGTTTGAAGCGTTCCATGTGTTCAAGGTTTTCGTGGCCAACCCTCACAAAACCCAGCCCATCGTGGACATCCTGCTGAAGAACCAGACCAAGCTGATCGACTTCCTCAGCAACTTCCAGAAGGACAGGACGGACGACGAGCAGTTCAACGACGAGAAGACCTACCTGATCAAACAGATCCGCGACCTTAAAAAGCCCGCTTCGTAGAGCCACTCGCCGCAATTAGTacacccttttcttttttaaaaataaatatatatataataattgtaacaaaatctttttttagTCCATAAAGCTTACAAAGGATAGTTTTCAAACAGATCTGTATCTGTTTTACTTTCATAAACCTACATACTTTCTATCATTAGTGGCACTGTAGGGTATTTTATTTCTAGTTTAGTCCTGTGAAGGGAGTACCAAAGGTTATACTAACTGAGCTCGGCAGAAGCAGTGGCGCTCGGGGGTTTGATGTGATTGGGCGGTGTGTATGAGGATCTTCAGTGGCTAAACCAAGGGCTGATTCCAGCACCTGATTCACAGAACAGATTTGTTAGTTTGCATCATGTCACCTTGTGATGGACTGTATTCAgagttattattttcctttcaacacTCCAGATTTATGGCAGTCAGAACGTGGCGTGAAATTCGCAGGAATGAAATGCAGGGACTGCTGATGTATGTTTGCAGGAAGGCCCAAGCTGATGTTTTTGCCTTGTAGGAAAAACTGAAGGCATTTTAATAACGGCATAGTAGTCACGgaggctttgttttgtgtgcatgtgaaaCTCTAACACAGTACCCTCTCAGGGTGCGCATTCTTCTTGTGTTTGGGTTGTTTTCCTCATTAAAACAGGTCTTTTATGAACAGTATGAGTCACCAGCCTACGAGACCGATTGGGctgatttgtttaataaacCAACACAATTTATCGTGTTGCTTTTCAGGCACTTAAGAGCATACTTGGGTGTTAATATATCAGTTTGCAAATTGAAGAGATTAGAGAAATTGTCGACGTGGAAAAAAGCAGTGCTTTCATAAGCCAGGATGCATCTCGAATTCGAATAGATGTTCATTATTTGGACACTATAGGTGTCAATATAGCTGAAGTCTTTTAATTGctctgatttatattttttaagtttaaagcGTTTTACTGTGCATCTTCTTTTTGTTAAACTGAGCTGTATcacaatgatttttttaaaatatttacgtGTGCCAATATTTGCCATGTGTACAAAAGCTCATTTTAGAAATTAAGGAAGTGCTGTTTAGAGTGGCAGAAGAAGTTAAGTCATGCAAATTTTGCTCTAGTGCAAGTAAGAGGCAAATgagaatattattttatgattggtatttatatgtgtgtgatCTGTAATatggtgaatttatttttttagcttttcTTCTGATTATTTAGAAACGGGCAGCGAATAGTGTGcctccttatatatatatatatatatatatatgcttcaCAATGTTGGGGACACAAGAACTCAAAAGGTGCCTTTTTGCTTCCTTTACATTAGTAAGACCTTTTTCTTTAGGGGGAgcttaatataaaataagactAGGTACACTTTTTTAGTTTGTGGATTAAGCAATGAACCCCTCCAGTTCACTTTACCCGAGTTCTGTTGTTCAGACACATTCTGCTTTAAGCtattgtagaaaataaatctatatgtaTGAAAACATTTCCAGAGGACATGAGGACCAGGTGACAGTGTGGCTCTCCCagatttcagaaatgaaaaggCCAGATATTTGTAGAGCTCAGGGAATCATCTTCCTTTCAGACGGGAAGGCAGAAAGATGACCGTACTAACACTTTGGCATTTCTCAACTGCCAAAAGGTGTCCTTATCAAAGCATTACTAATTGTGACCAATTTCTTTACACCTGAATACCAGTATTGGTTGGGACCACAAACTGTTTTTGCCCAAGGTCATTTCTAATGTAGGTGAAAAGGACAAATTGCATCACACATCCAACAGCTGTTATCGTTCAGTTGACAAAACCAGATGTTGCGATTTTGTAAAAAGGCTTTTTGAAATTCTGAATTATTCGGCGAAGTTTGTTGGgatgttaaaaaatgcaattacataCATAAGAGAAAAACCTGATTACAGATTATGGTTGCAGATGTTATGAAACATTTAACAAGTATTTGTTTGActgtcagttaaaaaaaataaccaaaacatattatttatatgcaattaacaaacaaattgcAAGTTTAAGTCTGTTCAGATTAAGCAGTAGTGACTAATTCTGTCATTTGAATTTTAGAAAACGTCTTCACATGaagaaaatgttcattttgCATCCTACAGTGTAGATGACATTGGCTCTTACAGTATTAAATTGTAAGCAGTGTAATGAAGGACCTGCCAGCAGAGACCAACATTGGAATTGATAAACTGTACCTGAGCCAAATTCTATTAGGACTGTCCAGTGGGgattcacttattttttttcacttatttttatgTACTAACcaaaaattgcaaaaaaaaaaaaatctttaatggTTTGTGTTTATCATTTTCTGTTGTGAAATTTCACCATGCGGTTGTATATTTCCACCTAATGCTAGTGTACCACATCAcagataaaagaaaacaataaaaaaatacataaaactattTT

Function

symbol description
cab39l Predicted to enable protein serine/threonine kinase activator activity. Predicted to be involved in intracellular signal transduction. Orthologous to human CAB39L (calcium binding protein 39 like).

NR:

description
PREDICTED: calcium-binding protein 39-like

GO: NA

KEGG:

id description
K08272 CAB39, MO25; calcium binding protein 39

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014376 True 3945 mRNA 0.40 9 11644028 11659546

Neighbor

gene id symbol gene type direction distance location
AMCG00014373 NA coding upstream 3568 11605968 ~ 11640460 (+)
AMCG00014371 tubgcp3 coding upstream 82158 11540432 ~ 11561870 (+)
AMCG00014370 sox1a,LOC105893305,LOC106586732,LOC101064967,LOC107692134,LOC107718482 coding upstream 250623 11392389 ~ 11393405 (+)
AMCG00014369 arhgef7a,LOC107668898,LOC107712280,LOC107569023 coding upstream 423254 11177961 ~ 11220774 (+)
AMCG00014361 NA coding upstream 514668 11125399 ~ 11129360 (+)
AMCG00014378 NA coding downstream 8610 11668156 ~ 11678181 (+)
AMCG00014377 NA coding downstream 29687 11689233 ~ 11696926 (+)
AMCG00014381 NA coding downstream 51852 11711398 ~ 11711931 (+)
AMCG00014382 NA coding downstream 100355 11759901 ~ 11761901 (+)
AMCG00014375 NA coding downstream 106882 11766428 ~ 11767590 (+)
G69681 NA non-coding upstream 2576 11641083 ~ 11641452 (+)
G69610 NA non-coding upstream 422754 11221070 ~ 11221274 (+)
G69556 NA non-coding upstream 682099 10959326 ~ 10961929 (+)
G69540 NA non-coding upstream 805798 10837204 ~ 10838230 (+)
G69499 NA non-coding upstream 1150632 10493147 ~ 10493396 (+)
G69722 NA non-coding downstream 59772 11719318 ~ 11722767 (+)
G69739 NA non-coding downstream 124319 11783865 ~ 11784083 (+)
G69778 NA non-coding downstream 940558 12600104 ~ 12600313 (+)
G69833 NA non-coding downstream 1320713 12980259 ~ 12982434 (+)
G69959 NA non-coding downstream 1674668 13334214 ~ 13335185 (+)
AMCG00014345 NA other upstream 1492115 10147979 ~ 10151913 (+)
G69406 tgfbrap1,LOC102780916 other upstream 1635380 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 4161468 7464503 ~ 7482560 (+)
G68848 NA other upstream 4227434 7413640 ~ 7416594 (+)
G68830 NA other upstream 4294561 7346195 ~ 7349467 (+)
AMCG00014407 LOC107725344 other downstream 1586763 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 1995692 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 2530018 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 2642901 14302447 ~ 14356868 (+)
AMCG00014470 NA other downstream 3562368 15221914 ~ 15242333 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008736 cab39 coding NC_007126.7 CM002899.2 39977461 ~ 40002930 (+)
grasscarp (Ctenopharyngodon idella) CI01000119_01800069_01805163 CAB39L, CAB39L.L coding CI01000119 null 1800039 ~ 1805636 (-)