AMCG00014392


Basic Information

Item Value
gene id AMCG00014392
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 12842790 ~ 12849371 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014392
TACCCGGATGTACTATCTGCACTTCCTGGTCGAGTGTCGCTACGTAAGACGTCATTACCAATGAAAACAGTGCGGGGACGattcaaaaaatgttaaagcagtttaggtttgtgtgtgtgtttatttaatttaattttaattctgtttctaTGCAATGCACACATTTTACGTAATGTGAATCTACGCTGTCATTACACTGAGCGTTTTATACTAGAGCTGTGACAATGAGTGCGACGCAACTAAGCCAGAAAGCCATGGATACAAAACGTTCGGGAGGAAGCTCTAGAAAAAGAGCAGAGCGCAAAAGAAGACCCAAGGACAAGCCTGAAGATGTTTCATATGGCAAGAGCGCAACAAAGCCAAGTGTGCACAGGGACAGCCTGGCCCGGAGTGCAGCTTGCAGCCCCTTGAGGAAGGTGCTCAATGTGATCCCAACAGGGAAGCAGTTACCCAGGACACCTCCCCCGGGGACTCCAGCTCTGAACCCCGAAGGTGCTAAGAAACTACATAACATGAGGAGAAATGGAGGAAACCAGGACATGGAAGGTGTGCCTGCTCCTGAAAGAGACGCTGCTGGAGAAAGGCATGGGCACGATGAGAATTTGCCAGGTTCAGATGTCATGACTCAACAAGCGTCAGAGTGTTTGATTGAGGACCCCAACGACATCCTGAAAGAGCCTTCAGATGTGCAGGACTTGGAAGagcagagagagatgagggagaaggctatgaggaggaggaagagcaccCTGGCCGTCGCTGCGCACCATGGTGAAGTAGACCAGGAGGGCATGGTTAAAGGCATGCAGGGCTACGAGTGGACTGAGGCCGACTTGGAGTTTGTTGAGCGAATGAAGAACGAGAAGCTGCTTCAGCAGCTGAAGACAGAATTAAAAATCTTACAAAAACAGCTGAAAGACGAGCAGCAGAAGAAGGACCTGTCTTTAGCAATGAAGGAGAAGATCCAAGCAGACTTCTCAGACATGAGCACCTCTTTTGACCAAACCCTGAAACTTGGGAGGGCCTTCCTCTGTGCTAAACTGGGTACTAAGAAAGTGAAGTCTTTGCCCCCTGAAGAGGTGATCTCACAGATGAGTGTGGCCGATATCCAGCATGTCTGTCAGGAGGAAAAATCCAAACTTCAGATTTTACAGAAGGAAGTGGAGATTGGGCAGCGAAAAACAGCCAAGCAGGTTGCACAAGAAGAGCAACTCAGAGTCAAGAAAAAACTGTGTgaagaagaaatggaaaagcAGGAAAGAAGGACCCTGATGGCAAAGGAGAATGTGGACCATATGAAGGCAGAGCTGTCAGATCTGAAGTCTAAACTCTCTGAATCACAGGAGAAGTTAAAATCCATGAAAGGCCAGATAGAGACTCTCAAGGCATCCAAGCAGATGGAAGCCCTGTCTCTTGATGGCCAGAGCAAAGAAGATGTTGACATGACCAAAATTGTGAGGCGTTCAAAGCGAATACAACACAGGAAAGATCAATTCCTGGAAAGAGATGCAATTCTGAAGAGGATTCGTTTACCAGATTGATGCCATAGTAGGTAGTGCTGACTGCCAggtgttatttattgttattattctgttgtgtatttgttaactCTCCCCAATTCTAATTTGTCACTaatgtgtgaaataaagttttttttttttttctgttaacaTGCGGTTTAGATTGATTGTAATGATAAATGTGACTTTCCTTCTTTGGTGGAAATCTATGAACTGTGAAATCCATGAAACGGATTTTAAGAGCATGGTATTACTCGATGCTGACTAGATAGTTTTATTTCTAGTATCTCTTGTGCTTTATCTTTCAATATTAAGTATTCATGGAAATAATTGAAAACCTTCAAAGTGCACAAACCAAATTATATGGAGCCGGGTAAGAATAAAAAGGGTCACCCTTTTAAGGAccctgtgaaatatttaatgtgGTTTTCATATTAGGCTAGTGTGAATTCAGCCCCAACATAAAAGGAAAGGAAGTTTTAGTTCTGCTTATGGAACCTTTAATGTTACAACTTTGTAACCACTAGATGGCAATACTACCTAAAACAAGAGATCTTGATTACATTGTGAtcttttcttacattttgtatccttttagtttttgtttattcatcaCCTTGATGGGCTGTTTTGgtgattttacttgttttaaaagaCAAGCAAAACAACCACCCTAATGTCCTACTCATCAGCTGAGAAATATGACATTGTGACAAGATGtgcttttaaatcaatttattaaATCAATCCTTGGAGTAATTTCAAGTGTAGTAGC

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0006259 DNA metabolic process biological_process
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko04110 Cell cycle
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis
ko04914 Progesterone-mediated oocyte maturation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014392 True 2295 mRNA 0.42 9 12842790 12849371

Neighbor

gene id symbol gene type direction distance location
AMCG00014393 NA coding upstream 1662 12834950 ~ 12841128 (+)
AMCG00014394 NA coding upstream 8471 12823553 ~ 12834319 (+)
AMCG00014388 NA coding upstream 897964 11943575 ~ 11944826 (+)
AMCG00014387 NA coding upstream 941369 11900522 ~ 11901421 (+)
AMCG00014383 NA coding upstream 965076 11870025 ~ 11877714 (+)
AMCG00014402 NA coding downstream 120887 12970258 ~ 12978095 (+)
AMCG00014404 NA coding downstream 128794 12978165 ~ 12978428 (+)
AMCG00014403 NA coding downstream 129100 12978471 ~ 12979109 (+)
AMCG00014399 jagn1,jgn1a,LOC106574769,LOC105027989 coding downstream 160334 13009705 ~ 13015654 (+)
AMCG00014400 NA coding downstream 180515 13029886 ~ 13040944 (+)
G69778 NA non-coding upstream 242477 12600104 ~ 12600313 (+)
G69739 NA non-coding upstream 1058707 11783865 ~ 11784083 (+)
G69722 NA non-coding upstream 1120023 11719318 ~ 11722767 (+)
G69681 NA non-coding upstream 1201338 11641083 ~ 11641452 (+)
G69610 NA non-coding upstream 1621516 11221070 ~ 11221274 (+)
G69833 NA non-coding downstream 130888 12980259 ~ 12982434 (+)
G69959 NA non-coding downstream 484843 13334214 ~ 13335185 (+)
G69961 NA non-coding downstream 502962 13352333 ~ 13380404 (+)
G70054 NA non-coding downstream 845444 13694815 ~ 13696871 (+)
G70221 NA non-coding downstream 1318075 14167446 ~ 14171012 (+)
AMCG00014345 NA other upstream 2690877 10147979 ~ 10151913 (+)
G69406 tgfbrap1,LOC102780916 other upstream 2834142 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 5360230 7464503 ~ 7482560 (+)
G68848 NA other upstream 5426196 7413640 ~ 7416594 (+)
G68830 NA other upstream 5493323 7346195 ~ 7349467 (+)
AMCG00014407 LOC107725344 other downstream 396938 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 805867 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 1340193 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 1453076 14302447 ~ 14356868 (+)
AMCG00014470 NA other downstream 2372543 15221914 ~ 15242333 (+)

Expression


Co-expression Network