AMCG00014397


Basic Information

Item Value
gene id AMCG00014397
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 12850007 ~ 12875536 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014397
cgggcacAGAGTTAAGGAAGCTGGAGAAAGATAGTGAAGGCAGGATGATGTGAAGGAGGTCGAGGCAGGGAGCTACACAACTATACGCAACTACTGTCATTTAGACCCAAACCCTTCATTATGCATTCGGACTGCAGGCTGGAATGGCCACAGTGGGAATGGTGAGAGCTGACACGACCGGGGCAGCGATCTTCTTCATTTCGGCATTCATCACCATCCTGAACACCAGAGGGACCAGAGCACAGAAAGgtGATGGCTGTGGCTACACTGTTCTTGGCACTAACAGCGGGACTCTCTCATCAATCAATTACCCCCAGACTTACCCCAATCATACAGTCTGTGAGTGGGAGATCCGTGTCAGTCCTGGAAAGAGAATTCATTTTAAGTTTGGGGATTTTGACATCGAAGACTTGGACTCCTGTCACTTCAACTACTTGAGGATATATAATGGCATTGGGACAACAAGGAGTGAGATAGGTAAACACTGTGGGCTGGGTTTGAAGTTGGATGACCTCATCGAGTCCAGTGTGAATGAAGTCACTGTGCAGTTCATGAGTGGCATGCACAGGTCTGGACGGGGATTTTTCCTTTCCTACTCCACCACCGATCACACAGATCTCATCACCTGCTTAGATAaaggaatttatttttctgatccAGAATTTAGCAAATACTGTCCTGCAGGATGCCGCACTTCATTTGGGGAGATTTCAGGGACCATCCCCCATGGCTACAGAGATTCCTCCTTGGTGTGCATGGCTGGTATTCACGCTGGGGTGGTGTCCAATGTCCTCGGGGGACAGATCAATGTTGTCAGCAGCAAGGGCATCCCATATTATGAAAGTTCACTGGCCAATAATGTGACTTCAGTTGTtggTTCCCTGTCTAACAGCCTTTTTACTTTCAAGACCAGTGGGTGTTATGGGACCCTGGGCCTGGAGGCGGGAGTTGTGAGGGACTCCCAGATCTCCAGCTCCTCTGTGTGGGAGTGGACTGACGTCAATGGACAGCTCAATGTGTGGGCCCCTACAGGGGCCCGTCTCAAGAAGCCCAGTATTCCCTGGTCAGCCTCCCACAGTGACCAGAGACAGTGGCTGCAGGTGGATttgaagaaagagaagaggatAACGGGAATCATAACCACTGGATCAACTCTCAAAGATTACTACTACTATGTGTCTGCGTACCGCGTGCTTTACAGCCACGATGGGCAGCACTGGGATGTGTACAGGGAAGCAAACACTGATCAAGACAAGATTTTTCAAGGAAATGCCAATTACCTACAGGAAGTACGGAACAACTTTATCCCTCCCATCGAGGCACGGTTCCTTCGGATTAACCCCGTGCAGTGGCACCAGAGGATTGCCATGAAGATTGAGCTGCTGGGCTGCCAGCCACACACAGGGAGGGCTGCTGCCCCCCGTTTACCACCGAAGATCAGCACTGACTTCCCTCTCCAGTACGGCAAGACGACTCTCACACCAGACGTCAGGAACACAACAATGACCCCCAACAGCAAAGGCTGGTGGAAGGGCATGAAGCAGTTCTTGCCAACGAAGGGCTCTGAGGCGGAGGAGTCCCCGGTGCGCTACAGCAGCAGTGAAGTGAGCCGCCTCCGAGGGAGGGAAGGGGCACCCGTGTTGCAGGCGGAGCCAGCAGAATATGCCCAGCCCTTGGTGGGAGGCATTGTCGGCACCCTCGGCCAGCGGTCCACCTTCAAACCAGAAGAGGGTTCCGACCCCGGCTACACAGAGCCTGACCCCTATGATGCTCCCCTGCAGGAGATATACCACGCTTATGCCCAACCCCTCCCAGCATCGGGGGCCGAGTATGCCACTCCCATCATCCTTGACATCGCCGGCCACTCGGCAAGTGGTACCTTGAGCCAAGTGCCAATCTCCACGTTCAAGGCTCGGGGTCCAGCATCTGTTCTGTCCAGGACAGACAGCAGTCCATCCTCGGGACATGCTCAGTATGACACTCCAAAGGGTACGTCAGGGCAGGGGCCCACGCTGGACGAGTATGTCTACCAGGTTCCACAGAACAATGTTCAGAAAGCAGCCGACAATGGCTGAACAGTGCCAAGGGGAGTTCCAGCCTAATGAATGTAGCTCACCTAGGCACGGGGTTGGGCAGCCTGGACTCTCCCAGACTGGCGTGTTGCTGTGCTGGGTTCCTGCCTGGTCTTTCCCTAGTAGGACCTCCTTTCAAGATTTCATTCGGACAAAGCTCAATGAAAGCCAAGGCTGAAGTCCCCAGATCTAGGTCTTGCtcatttttaaagcacactACCTTATTTTATGGTTTGATATGGTGTACGCATACCTGTTTATGCACAGTGAATTCCATTGCCTTTAGGAAATCCTTCCATTCCAGTCCTACCACTGAAGCAACAGATGTGAATGTTAGCCAAGGGATATGTCACTGCTGTGAGACCAGAAGgtttaaaggttttttttttttttttattggtttggGTACCTGTGACAAGTTTCTTCTGATGTCAGATTAAGGACTATGTTCAGATGCTTAGCTGAAAAGGTTTCCTTATCATACACGTGTCATTTGTTTTagaactgaatttaattttggcagctttttaattttattttattgagacTACACATACAGACACTGCTTTGACCATAGACCTATAGAGAGCACTGCTGCCTGGACCATCTGTCCTGGCCTTCTTTCTCAGATTGCAAACCACTGTGAAGAGGTGACCCACCGCACACTGTGTAAtctattgcttttttaaaataaccattcaaggattttgttattgttactaaAGTATATATACAGCTAGTGCTGCCTTTACTGCCTTTCTGTAGCTATGCTCCAGGACTGGTATTTGGTTtaattgtacaaatatatatttgcaaggCAATGGAAACCATCGTTAACAATATGCAGGAAAGTAACCTTTAGCATGTCTTTTATATCGAGTTCTGGATAGAGATGTGTTCAGTGTgatcatttaatatataatgttttgcaCTTTCTTATAGCAATTTACTGCGAAATGCCACTTAACCATTTGTGCCATCAAGGAAAGGCAGGGTTTGTTGGTGTCAATTAATGTTGCTTTATCACTGCCTTGGTTTTCAAGTAAGGATAAATCCTATCTGGGCTTTATTTGGTATTTATACAGGAAGTGtgtacatatttgtgtgtgtttgagtatTCATGCTGTACATGGACTGAAATATAGGTGTATACACTAGTATCTCTGTTCACACCACAGAGAAGAGCTACTGAGACTGTTTTACCAAATCTCCTCATagctttttcatttgaaagtttaaaaacttTGGGAAATGATCTTCAGATTTCAAATTTACCTCCCATTTATGATTTCTACTCAGTCAATTGTTGGTTTTGTGATTTGTCTAATCTAATAGAATGTTTTCAACCACCTACCAGGTGAGCATGAAAACCCTGTGTTTTAGCAGACAAGCTAGGTTATCCCTACAGACTGCTTTATACTAAGGTTCGCCAGAGGATGACATACTtaatatagaaagaaaatacaatagcTTGAGATTAAAGGAACACCACCTTTTAAGTGTTGTTCATACAAAACCAGTTCAAACTCAGTggtttataataatagtaataattcattctgtggtttgttttctatCTCACTGTCTACAGTAAGTCATCGATCTAGAGTCTGAGTTCTTTTACAAGAAGTCTTCATAATCCAATATAATGCGCAATATAATGAACGTTGATCTTGGGGCCACACAATCATGGCACACATTTTAGAAAACCAAAGGATTTATACGTGTCTCTTGCATTTATACGCTCCACCTGGAGGGCAGTGCGAGTCTTACAGTCTGGCAATAGCGGCTTTGAACACAAAGGTCCATGATCCTCTCTGCATGGCCTGGGGTTCGGAGATGCATAACTGGGTAGCAAAGGGAAAACTAGAGAGTCGTCAGTGATTTTTGATGTACAGTAATATAATTATACTTGCACAAACCAGTCTTTGGTGTTCAGTTAATTGTGAATAGCAACTACATTCCAGATGTTAGACCAACACTTCTTAACCAATCATATTTCCAAATTATACTTAATATCATTGAACTGCTTCACAGAGAGATGTCTGTCAAACAAAAGGACATGTTCCATTGAAGTCAAGGAATATCCTTTTGTATCCAATGTGTCTCAAGTGTTAGGCAGctaaacaatgttttccttgTACTGACCACAGTTGAACTACAAGTCTATTATCTGTCTATTATTAGTCAAAATCACAGCTGGTAAGTCATTGCTCCAGACTTGACTGTGATGCAGATGAGTAACAAAACCAGAAATTGACCAGTACTCTCTCCTTACCACCACCACAATTTAAGACTGAAGGGGAACTAAATTAGGAACACATTTCAGATAACTCAAAAGATTCCAACCCCTGCTCTGTTCAAACAAAAGCTTTTGAATTTGGTGGTAAGAGCTGCAGGCAGGGGGCAAACCAACACACCCAGGTGCATTATGGACCATCTCAGTTCTCAGCATTGCTGGTGGTGGTTGACTTTAATTGAGGAAGCCAAGACCAGactgagcaaaggctgtgatgACTAGGATTTTACATGCTGTGGGTCAAATCAGTTTGCTAGATTTTTAAATCCATGGcaatttacactgtatttattattattaaagatgtCCTTATAGACAAGTACAGAAGactgtttaaaatgcagagaGCTTTGGCATCCATTTGAACACTTTTATCATCATACATATTTACTGTTTTCCTTGTCATGTCctgctgtatttttcttttaacggTGTGCTATGAGGTGCTtccaaaaaaatgtaactttggTATGAAAACGGTAATATTGACACAAAGCACAGCATCCAAATGTTAACATGTCATGGTTTTGCAATTTGCGCCCTAGGTCATTCTCATTGTCCATGTTTAATTTCTTGTGTTAATTGCAATCTGTAGTGCTGGGAATGCATGTTAGTGCTTACAGATATATGGACGGTATGAAAGCTGTCCTTAGGATTCAAGCAGCAAACTCATTCAACAAAGAGGAAATAGTGCGTGTTCAGACTATCTGTACAGTGTCGTAACCATTTCAGTGGACAATGTGAATCTAAATCATGCCATACATGTGCAAATCCTACtgcgtgttttttttaatgctttacatCCGAGACATGCAAATTCTTTGACACGCCTTCCCTTCACTCTGATTGTAATGGGTTTCTTTCTCAGTGGATTTCTAACTGTGGTTGGGGTAAAATGACAACATAGTTTGTGCATGTAGgtgaaatggaaattaatcaCCTGTCTGGACAAGGGTTTCAGTTAAGGGTGAAGCTCTTAAAGAATGTATCTCATCTTACCTCGGCATGTACTGTAGTCActctgtatttgtatatgttggTAGAGTTTAGATTGTatagagaggaaaaataaattttaaaatgttttatgtatgatttaataaatttttttaaaagctgcctGGACCATGACACTTATCATTTTCTCTCGATAATGTGTtcttagttttaaaatgtaatttccgtTAACAGTGCTATCCAAACAACTAATCGGACATGGCATTGTACTACACAAGGATTTGAATGGGGTATATGCTTCATTCTAAAAGAAACTCCAATaacagctttattttatatgacaAGCAATGGAAATGTTTAGAGTACGC

Function

GO: NA

KEGG:

id description
K24794 DCBLD; discoidin, CUB and LCCL domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014397 True 5696 mRNA 0.43 13 12850007 12875536

Neighbor

gene id symbol gene type direction distance location
AMCG00014396 filip1l,LOC100693076,LOC102213048,LOC102798342,LOC101473988,LOC105027992 coding downstream 69169 12778483 ~ 12780838 (-)
AMCG00014395 NA coding downstream 110342 12729727 ~ 12739665 (-)
AMCG00014389 NA coding downstream 123363 12721742 ~ 12726644 (-)
AMCG00014391 il1rapl1,LOC106575569,LOC106574938,LOC105023742 coding downstream 650817 12197039 ~ 12199190 (-)
AMCG00014390 il1rapl1,LOC100693228,LOC101468878,LOC102196907,LOC101172314,LOC107381071 coding downstream 846198 11984073 ~ 12003809 (-)
AMCG00014398 NA coding upstream 31868 12907404 ~ 12982495 (-)
AMCG00014411 impg2b,LOC108432621,LOC107704545 coding upstream 299675 13175211 ~ 13203807 (-)
AMCG00014408 NA coding upstream 333209 13208745 ~ 13237528 (-)
AMCG00014413 txnl4b coding upstream 366290 13241826 ~ 13242652 (-)
AMCG00014410 NA coding upstream 376399 13251935 ~ 13260989 (-)
G69759 NA non-coding downstream 969551 11879097 ~ 11880456 (-)
G69743 NA non-coding downstream 1078614 11769690 ~ 11771393 (-)
G69539 NA non-coding downstream 2028935 10815771 ~ 10821072 (-)
G69536 NA non-coding downstream 2053818 10795883 ~ 10796189 (-)
G69535 NA non-coding downstream 2056861 10792919 ~ 10793146 (-)
G69849 NA non-coding upstream 94717 12970253 ~ 12970555 (-)
G69896 NA non-coding upstream 209827 13085363 ~ 13086345 (-)
G69950 NA non-coding upstream 426388 13301924 ~ 13302379 (-)
G69973 NA non-coding upstream 428890 13304426 ~ 13375879 (-)
G70034 NA non-coding upstream 747579 13623115 ~ 13623381 (-)
AMCG00014374 NA other downstream 1182470 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 1712921 11125029 ~ 11137086 (-)
G69537 NA other downstream 2051860 10796716 ~ 10798147 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 2788777 10058097 ~ 10061230 (-)
AMCG00014340 NA other downstream 2832256 10001134 ~ 10017751 (-)
AMCG00014412 LOC106574775,LOC107704546 other upstream 212072 13087608 ~ 13133751 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 3846537 16722073 ~ 16737877 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 4571332 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 4713731 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 5115115 17990651 ~ 18022095 (-)

Expression


Co-expression Network