AMCG00014401 (tfg,LOC102777061)


Basic Information

Item Value
gene id AMCG00014401
gene name tfg,LOC102777061
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13057865 ~ 13065977 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014401
AACGGACAGCCGCGGCCCCTGGAGTCCAGCCAGGTGAAGTATCTTCGGCGTGAGCTGATAGAGCTGAGGAACAAGGTCAACCGTCTGCTGGACAGCCTGGAGCCCCCTGTTGACCCCGGCCTCTCTGCCAGCGCACCAGAGAACGAGGCAGTGgatgggagggaggggaagCAGGTGGCTCCAGACTCCACGGCCAAGCAGCCTGTGCCAGTCAGTGCCGCTAGCATGTCAGCCTTTGACCCCTTGAAGAACCAGGATGAAATCAACAAGAATGTCATCTCCTCCTTTGGACTGACAGAGGACCAGGTCACAGGCCCCCCCAGTGCTCCAGTAGAGGAACGATCAGGCACTCCTGACAGCATCGCCTCGTCCTCCTCCGCAGCCCACCAGCCGGGTGTCCCCCCACAACAGCAAGCCCCTTATGCAGGAGTGCAGCCTCCCCCTGCCACCATGGAT

Function

symbol description
tfg Predicted to enable identical protein binding activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within COPII vesicle coating. Predicted to be active in endoplasmic reticulum exit site. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 57. Orthologous to human TFG (trafficking from ER to golgi regulator).

NR:

description
PREDICTED: protein TFG isoform X2

GO: NA

KEGG:

id description
K09292 TFG; protein TFG

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014401 True 456 mRNA 0.62 3 13057865 13065977

Neighbor

gene id symbol gene type direction distance location
AMCG00014400 NA coding upstream 16921 13029886 ~ 13040944 (+)
AMCG00014399 jagn1,jgn1a,LOC106574769,LOC105027989 coding upstream 42211 13009705 ~ 13015654 (+)
AMCG00014403 NA coding upstream 78756 12978471 ~ 12979109 (+)
AMCG00014404 NA coding upstream 79437 12978165 ~ 12978428 (+)
AMCG00014402 NA coding upstream 79770 12970258 ~ 12978095 (+)
AMCG00014406 NA coding downstream 173096 13239073 ~ 13240110 (+)
AMCG00014405 NA coding downstream 174863 13240840 ~ 13245634 (+)
AMCG00014414 NA coding downstream 200040 13266017 ~ 13274303 (+)
AMCG00014417 NA coding downstream 210596 13276573 ~ 13284294 (+)
AMCG00014416 NA coding downstream 225352 13291329 ~ 13301873 (+)
G69833 NA non-coding upstream 75431 12980259 ~ 12982434 (+)
G69778 NA non-coding upstream 457552 12600104 ~ 12600313 (+)
G69739 NA non-coding upstream 1273782 11783865 ~ 11784083 (+)
G69722 NA non-coding upstream 1335098 11719318 ~ 11722767 (+)
G69681 NA non-coding upstream 1416413 11641083 ~ 11641452 (+)
G69959 NA non-coding downstream 268237 13334214 ~ 13335185 (+)
G69961 NA non-coding downstream 286356 13352333 ~ 13380404 (+)
G70054 NA non-coding downstream 628838 13694815 ~ 13696871 (+)
G70221 NA non-coding downstream 1101469 14167446 ~ 14171012 (+)
G70271 NA non-coding downstream 1400727 14466704 ~ 14467744 (+)
AMCG00014345 NA other upstream 2905952 10147979 ~ 10151913 (+)
G69406 tgfbrap1,LOC102780916 other upstream 3049217 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 5575305 7464503 ~ 7482560 (+)
G68848 NA other upstream 5641271 7413640 ~ 7416594 (+)
G68830 NA other upstream 5708398 7346195 ~ 7349467 (+)
AMCG00014407 LOC107725344 other downstream 180332 13246309 ~ 13251732 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 589261 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 1123587 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 1236470 14302447 ~ 14356868 (+)
AMCG00014470 NA other downstream 2155937 15221914 ~ 15242333 (+)

Expression


Co-expression Network