AMCG00014412 (LOC106574775,LOC107704546)


Basic Information

Item Value
gene id AMCG00014412
gene name LOC106574775,LOC107704546
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13087608 ~ 13133751 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014412
CTGCTCTCTCTATCATTCAACTGTTTTTGCACAGTGAACAGAAGTCCTAAGTGAGTTGCTACCTTAGTGAAGTTGCACAGCATCCCTCACAGCCAGTGCAAGAGAATGTTCCCCAGGCTGCTTCTCTTCCTACTCGGTGGGATTTTACTGCTGAGCTATGGCACAACAAAGAGGCTACAAAGAGTTAAAAGACAGAATCTGAAGGTGCGTATCAATGCTACAGGGGACACCATTGTAATGAAGTTCGTGCGGCCAAACCCTGCCACCAAACTGGAAGGCTATATTCTGGGATATGGGAGCAGCATGTTTTCTAAGCAATTCATTCAACTACCTGAGAATGGGGAGCCATACGAAACAGAAATAGATGCAGAACCCAAATACTTAATAGCAGTGCAGCCAATTCCAACCAATGAGATAAAGAAGCAATGCACAGGTCAAGTCAATCTTGAAAAACCATTGCATCTTGTTATCGGATCTGTGACACCCACGACTGTCTTACTGTCCTGGGGCACTTTGCTAAAAACACCCTTTGAAGGAAGCATAATGAATGACTGTCTGGAAGATGGACACTACACTGTACGCTAcagggagaaagaaaggaatagGAAGTGGAACTATCAGACCTGCCCCACTAGTGACACTGTGATTGACAAACTTAAACCCAACACTCCCTATGAGTTTGGTGTCAGGCCTACCAAGGAGAAGGATGATGGATTGTGGAGCAAACCTGTCTTTCATAAGACCAATGTTGGAGgtgtaTCCAAGAAACCAATTGGGAAAGAACCTAAACTCTCTGAAGTCAAAGGACACCCAAATGGGAAGCCTCGGAAAAACACGCTGATTTATAATCCAAACCTCATCAAACCACCCCGTATAGGCTCGATTGCAAAGAGGCCTGTTTCACACAACAGGAAACCAAACACAGTAGATGACAAACACAGCAACAAAGacccAATACGGTCACCTATCAAGGACTCTGTTATGAAGAAACAGTTCCCTCCTGTGACTGCAAAGCCTGCCAAACAAGAGAGGAGACAGACAACAACGACGGCCGCTCCGGTAGTGAATGACGAGCCTTGCTCCATCACAAACTCCCTCAATTATTTCCCCGATGAGGAAGCCACTGAGCAGAACATCACCGCGCCGCCCAAGTACCCACCTTCCAACCTCACCGTGGTGACCGTGGAGGGCTGCCCTTCCTTCGTCATCCTGGACTGGGAGAAAGTGGACAATGACTCAGCTACAGAATATGAAATAATCTCTACGACAAAGGGTCCAAAGGGTGAAGAGAAATCCATCGTGGTCACCAACCAGACCCATTCTCCTGTGGAAAACCTGAAACCCAACAGCAGttaTGAATTTAGAGTTAAAGCCCTTAATGATCTTGGAGCTGGCCCAGTCAGTGATGCAGTGTCTTTCAGCACTGAATCAGCGGACCCCCGTGTGAGTGAAAACCTCTCAGGAAAAGATGCGATCTGGACACAGTTCCCATTCAAGTCTGACTCCTATTCCGAGTGCAATGGAAAGCAATACGTGAAGAGAACTTGGTATCGGAAGTTTGTGGGCGTCCAGCTGTGCAACTCCTTGAGATATAAAATTTATCTGAGTGACTCCCTCACAGGGAAGTATTATAACATCGGCGATCAGACGGGTTATGGGGAAGACCACTGCCAGTTTGTAGACTCCTTTTTAGATGGTCGTACGGGACTCGTGCTCAGGGGTGACCAACAACCCCTTAGAGAAGGTTTTTATCGATCTGTCCGCCAGGAACCGGTTCACTTTGGGCAAATAGGAGGCAACTCTCATATTAACTACGTGCCCTGGTATGAGTGTGGGACGACAATACCCGGAAAGTGGTAGAATCAACGAACTGGGGGGGGGGTCTAGTGACAAGTGTAGGATAAGGGGCAATGGGTATAATTGGTGGCGGTAAGGAGGTGAAGGGATCAGGGGTGGATTATCTTTTATTATAACTGCATCCCTGCCATGTAAACCTCAGCCTTTCTcatgtataaaatgtgtataagaTCTTATGCATCGAGAACTTTATTGagtgtatttgtaatatgtaatactTAAATCGCTACATCGTTATTTATCAAACgtgacaggaaaaacaaaaaaaacgtgaTCAAAAAAAGGCACATCAGAGGAATCGTGAAATGCATAagtaaatagaataaaatattggGAAGCTGGCTCCCTGAAACTATTTTGATaacttgtatattattatttatcaaaatgttgtattaaatgTTCCTTCTGGTGGTTTATCAGCAGTTTAGGGAATGGACTACGGTACAGTGCTTCAGTAGAACAGTTAATGTGTCTCATATTGACATGGATAGAGATCCCAGTAAGTGTTGCACActataaatgcatttcttacaACACATACCTACAGCAGAGTCGTAAAGATGGTCAAATTCACACATGGGCATGTCACGACACGCTCCCCTGAGACATGGGCACAGAAAAAGCACAGTGATGTACAATTCTGTCCATTTGGTAACTGTGGTGCTTAATGAAAAATTGCATTTAACCAAGTAATAATGGATTGATGATCATTATAGCAGACACTCAGTACTGGCGCATCAGTTGCATCTCCCATCCAGTATCAGAAGCCTTGTACCTACTTAAGTTTCTTCTTGCATCAGTGCCATTCAAGTTGGTGGCTGTAGCCCGAAGGATGTTACAATTGCAATTtgcacaatataaatgtatttatatgtatatggaGAGTAAGAAGCCTTATGAACAAAATCATGGAACAAACTATCCCTTAAACCTTGTGAACCACCTATCACTACAAGTGTACATTCTCCCATTTTTCACAAACTCTTTCAAAAACCAGAGCGTGGTATTTATATAGTCTAAATAAGAGGGGGGGGTTActgcattttatattgattaatgAAATGGAGACAGGATTACTTAATTGTCTGGGTTCTATGTTTTGTACAGAAACCAAAGCTCACAAGTGGTGGCTGcggtcatttttgttttttatggaaaatgtttataattgtatttttttgacCTGTA
>TU87328
GTCAGCAGGTTTGACGTGGGTGACAACTCTTCCATTTTCAGTTCCCATCCTATATCTGAAGTTGATTCATTGGGACAGAAACGCTTCATAGCACCTCATGTGGTGTATAAGGTGGATAAGAAGCCAGACGAGCCTTGCTCCATCACAAACTCCCTCAATTATTTCCCCGATGAGGAAGCCACTGAGCAGAACATCACCGCGCCGCCCAAGTACCCACCTTCCAACCTCACCGTGGTGACCGTGGAGGGCTGCCCTTCCTTCGTCATCCTGGACTGGGAGAAAGTGGACAATGACTCAGCTACAGAATATGAAATAATCTCTACGACAAAGGGTCCAAAGGGTGAAGAGAAATCCATCGTGGTCACCAACCAGACCCATTCTCCTGTGGAAAACCTGAAACCCAACAGCAGttaTGAATTTAGAGTTAAAGCCCTTAATGATCTTGGAGCTGGCCCAGTCAGTGATGCAGTGTCTTTCAGCACTGAATCAGCGGACCCCCGTGTGAGTGAAAACCTCTCAGGAAAAGATGCGATCTGGACACAGTTCCCATTCAAGTCTGACTCCTATTCCGAGTGCAATGGAAAGCAATACGTGAAGAGAACTTGGTATCGGAAGTTTGTGGGCGTCCAGCTGTGCAACTCCTTGAGATATAAAATTTATCTGAGTGACTCCCTCACAGGGAAGTATTATAACATCGGCGATCAGACGGGTTATGGGGAAGACCACTGCCAGTTTGTAGACTCCTTTTTAGATGGTCGTACGGGACTCGTGCTCAGGGGTGACCAACAACCCCTTAGAGAAGGTTTTTATCGATCTGTCCGCCAGGAACCGGTTCACTTTGGGCAAATAGGAGGCAACTCTCATATTAACTACGTGCCCTGGTATGAGTGTGGGACGACAATACCCGGAAAGTGGTAGAATCAACGAACTGGGGGGGGGGTCTAGTGACAAGTGTAGGATAAGGGGCAATGGGTATAATTGGTGGCGGTAAGGAGGTGAAGGGATCAGGGGTGGATTATCTTTTATTATAACTGCATCCCTGCCATGTAAACCTCAGCCTTTCTcatgtataaaatgtgtataagaTCTTATGCATCGAGAACTTTATTGagtgtatttgtaatatgtaatactTAAATCGCTACATCGTTATTTATCAAACgtgacaggaaaaacaaaaaaaacgtgaTCAAAAAAAGGCACATCAGAGGAATCGTGAAATGCATAagtaaatagaataaaatattggGAAGCTGGCTCCCTGAAACTATTTTGATaacttgtatattattatttatcaaaatgttgtattaaatgTTCCTTCTGGTGGTTTATCAGCAGTTTAGGGAATGGACTACGGTACAGTGCTTCAGTAGAACAGTTAATGTGTCTCATATTGACATGGATAGAGATCCCAGTAAGTGTTGCACActataaatgcatttcttacaACACATACCTACAGCAGAGTCGTAAAGATGGTCAAATTCACACATGGGCATGTCACGACACGCTCCCCTGAGACATGGGCACAGAAAAAGCACAGTGATGTACAATTCTGTCCATTTGGTAACTGTGGTGCTTAATGAAAAATTGCATTTAACCAAGTAATAATGGATTGATGATCATTATAGCAGACACTCAGTACTGGCGCATCAGTTGCATCTCCCATCCAGTATCAGAAGCCTTGTACCTACTTAAGTTTCTTCTTGCATCAGTGCCATTCAAGTTGGTGGCTGTAGCCCGAAGGATGTTACAATTGCAATTtgcacaatataaatgtatttatatgtatatggaGAGTAAGAAGCCTTATGAACAAAATCATGGAACAAACTATCCCTTAAACCTTGTGAACCACCTATCACTACAAGTGTACATTCTCCCATTTTTCACAAACTCTTTCAAAAACCAGAGCGTGGTATTTATATAGTCTAAATAAGAGGGGGGGGTTActgcattttatattgattaatgAAATGGAGACAGGATTACTTAATTGTCTGGGTTCTATGTTTTGTACAGAAACCAAAGCTCACAAGTGGTGGCTGcggtcatttttgttttttatggaaaatgtttataattgtatttttttgacCTGTATGATTATTACAATctgtattttcaataataaaaaaaaatatttactttttttaa

Function

NR:

description
PREDICTED: target of Nesh-SH3-like isoform X8

GO: NA

KEGG:

id description
K24477 ABI3BP; target of Nesh-SH3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014412 True 3048 mRNA 0.43 16 13087662 13133751
TU87328 False 2160 lncRNA 0.41 8 13087608 13096336

Neighbor

gene id symbol gene type direction distance location
AMCG00014398 NA coding downstream 105113 12907404 ~ 12982495 (-)
AMCG00014397 NA coding downstream 212072 12850007 ~ 12875536 (-)
AMCG00014396 filip1l,LOC100693076,LOC102213048,LOC102798342,LOC101473988,LOC105027992 coding downstream 306770 12778483 ~ 12780838 (-)
AMCG00014395 NA coding downstream 347943 12729727 ~ 12739665 (-)
AMCG00014389 NA coding downstream 360964 12721742 ~ 12726644 (-)
AMCG00014411 impg2b,LOC108432621,LOC107704545 coding upstream 41460 13175211 ~ 13203807 (-)
AMCG00014408 NA coding upstream 74994 13208745 ~ 13237528 (-)
AMCG00014413 txnl4b coding upstream 108075 13241826 ~ 13242652 (-)
AMCG00014410 NA coding upstream 118184 13251935 ~ 13260989 (-)
AMCG00014409 rpl24 coding upstream 128628 13262379 ~ 13265549 (-)
G69896 NA non-coding downstream 1263 13085363 ~ 13086345 (-)
G69849 NA non-coding downstream 117053 12970253 ~ 12970555 (-)
G69759 NA non-coding downstream 1207152 11879097 ~ 11880456 (-)
G69743 NA non-coding downstream 1316215 11769690 ~ 11771393 (-)
G69539 NA non-coding downstream 2266536 10815771 ~ 10821072 (-)
G69950 NA non-coding upstream 168173 13301924 ~ 13302379 (-)
G69973 NA non-coding upstream 170675 13304426 ~ 13375879 (-)
G70034 NA non-coding upstream 489364 13623115 ~ 13623381 (-)
G70063 NA non-coding upstream 561006 13694757 ~ 13696971 (-)
G70091 NA non-coding upstream 625475 13759226 ~ 13761420 (-)
AMCG00014374 NA other downstream 1420071 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 1950522 11125029 ~ 11137086 (-)
G69537 NA other downstream 2289461 10796716 ~ 10798147 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 3026378 10058097 ~ 10061230 (-)
AMCG00014340 NA other downstream 3069857 10001134 ~ 10017751 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 3588322 16722073 ~ 16737877 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 4313117 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 4455516 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 4856900 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 6068052 19201803 ~ 19203567 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location