AMCG00014416


Basic Information

Item Value
gene id AMCG00014416
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13291329 ~ 13301873 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014416
ATGATAGTGGACCGACTTTCCGAAGATAGTATGGGCGGTATGGAGCAGGACCCCGGGCTGACGCCGAGCCCCATGAACCTGGGTTATTTCTTTGGGCAGTCCCCCGAGGCCAgcgagccctgttcctccccAGGGTCCCAGCTGTCTCCGCGCTCGCCCGGCTCCGACTGCGAGGCTTCGGGCGGCGGCGGGCCCTGCAGCCACGGCAGCGGTAAAGCCAGGCGCAGACGAGAGTCACTGATGGGCGGCGGGCGGCAGCAGGCCCGGTGTTTCCAGGGGGTGCGTGTGAAGAACTCGGTGAAGGAGCTGCTCATGCAGAAGCGCAACGGCCTGGTGCCCCCCGGCGCCGCGCACGACGGCACGGTGCAGATAAACTCAGAAGGACCTGAGGAATTTACAGAGCTGAAATCCATACTGCGAGAGGGAAAGAGACATGCTGCCCCCGACTGCCTACTTGACACTTTGTGTTACAAAAAACCTGCCACATTCCAAAACAATCTCCTGacACCTCCTCAGACACCCAGCTCCAATGATAATATGGAGTCTGGCCCAAAGGAGGACCCAAGTTTGGATGCCAACTCCAATATCTTGGACATTTTCCAGATGGTAAGGGATGGTAGTGGTAGCCCCCTTTCCCTGATGACCGTGCAAGTGAACTGGGAGAGTCCCTCCCAGGACCAACAAAGGGACCTCTATCACACAGTCCTGCCACAGGAAAGTTGTGGGCCGGTGCAACTCCCGTTCAGCAGCCTGCCACAAACCAGTAATCTAGCCCACAATGCTCCCGTCCAAAATGTAAACCTGCCTCAGGATCCAGAGCTTCCACAATACCCTTCTTCCGAGATGTGCTCCATCAGCAGTCATTCACAGTGCTATCTGCCTCCCTTGCCCCAGCTTCAGGCCCCCTTCTACATGCCCAACCAAGTGGCCAGTCCTGAGGCTAAGCAGACCTGTGACAATCCCACCAGATTTTCCTTCTTGCCCTTCCCACCTCTCAAGCCACAAGCCTCATCTGCCCAAAGGCCTCCCCTGCTGCCGCAAGCCATTCAGGGCAGTGGTGGCATGTCCTTCTTTCAGTGGCAGATCgagcaggaggagaggaggcTGGCCAGCCTGAGCCAGGATCGCTTCGTGGCCCGAGACAGTGATGGTGACACGTTTCTCCATATTGCTGTTGCCCAGGGAAGGCGTGCGTTGTCCTATGTGCTTGCCAGGAAAATGGCTGCCATTAACATGTTGGATGTCAAGGAGCATAATGGCCAGAGTGCACTACAGGTTAGTGTGGCAGCCAACCAGCACTTAATTGTGCAAGACCTGCTGAACCTGGGGGCACAGATAAACACGGCTGACTGCTGGGGCCGCACACCACTACACGTCTGCGCAGAGAAGGGCTATTCTTTGACACTAAAGGCTATTCAAAGAGCAGTGCAGGCAAATGGGAAGCACCTTGACCTGGAGGCCATAAACTTTGATGGCATGACTGCCCTCCACACTGCAGTTCTGTCCCACAATGCTGTGGTGCAAGAGCTGCACCGGGCCCAGCAGCCCCGCTCTCCCCATGTCCAGGACCTGCTGCAGAAGAGGAAGCTGCTGGGGGAGTGTGTGAGCACCCTGCTGCACATGGGAGCCTCCTTCAAGGCAAAGgACCGCAAGAGTGGGCATACAGTGCTGCACATGGCCGCAGAGGAAGCCAATGTCGAACTTTTGCGCCTCTTCCTGGACCAACCCGATTCCCTGTCCGTCGTCAATGACAAGACGTACAACGGGAACACTGCCCTACACATTGCCAGTGCCTTACAGAACCGCATGGCACAGGTGGACGCGGTGAGGCTGCTGATGAGGAAGGGTGGGGACCCCAGTGCCAAGAACCTGGAGAACGAGCAGCCCGCCCAGCTTACGCCTGAGGGGCCGGTGGGGGAGCAGGTCCGACGCATCCTGAAGGGAAAAGGAGCTCTTCAACGGGCCTGTCCTTTCTAGACCCTGTGCCACTTTTTTGATAACCACTGTCAGTTAGGCAGTCCATGTTTTGTTGTAAATAATCATTTGTCAGTTAGATAAATGTGAGTTGTTTCCATGAAACAAACTAAGAATTGTTCACTACTGTGTAGTGGGTGATACCAGAAGACAAAGTTTCTCAACAAGCCACAACATACAGCTCAACTCATCCCATAGCAAGCTGgaacatatacattttcaggATTTAATGTGCCTAAACGTGTGCAAGAGTCAATAAAAACAAGGTTGCTGAGGCCAAACAAATTTTCCATCATATCAGATTGTCTGATACATATTTCCACCCTTGAATTGTAATGTGTGACCTTTGAGTATACAAACCTGATGCTTATTCATCCAAACACAGTACATTGTAGCACTACAGAACTTATTTGTAGGTGAAGAAATTCACTCAAAGTTCAATAGAAAAGATAATATGTGATTCATGTTGTAGGAATAACCTCCGTTTTGTTAAACCAGACCTTTAGTCAATGGATAAGATATTCCGTTCAGATACTGTTCATTTTCCAACACAACCATTTTAGCAATCTCTCAAGCAGGTAAATGTCTTTATTGTTGGACTTGTTATCAGTACACTTTGTCTTTCGCAGGGcaagatatgtatatattcaaaatggAACCTTAACTAATGAGAcctcttgttgtttgttttaaaaatagttcaaATAGTTATTCATTAACTTTTATTAGGGTGATAAAATATTCCTAATACCCATGATGTAAGGTTCTGTGTTGAAGACATTCAATATGTAACCAGAGAAGGAAAAGTGTGGTAAATCTACTgtaatttattatcattattatttttatatatataacgtaAATTAAGCAGAATATCCATAAAAATGGGTTTGGAGTATTATTATGACCCTAGTAATGGTAAAATTAGTTTCACAACATTGATAAAAACTAACTTACTTTTGATAAATTTTCTCTTACTACTCAGAGATTCTATTAGACATATTAGGGCAGatatgttttgtacatttaatgtattttgattataGCCAGTGATGAGTGTCAATAATGTGTGAAATTGTGACATAACTTCTGTTTGAAATAAGAATGCTAATCAGTCATGTTGAAAGCTATACGCAGTGTCATGAAATAGTGAGAGAGTTCATGGATCCATTCTTTTACTAATTTTACTGTGTACGTTTTGATGATGATTGTCCTTTAAAGTTAAAGAGCATTTGAAGTACAGTTATGGAAATGTTGAAAATCACGAGCTGCTTGAGCATGGTAAAGATGCCTAGCAGAaaggtgttgtgtttttttaagtttattccTCTGTAACTTTCAAACtgattgtaatatatttttggagCTATTGTTAATTTTTTGATTTGTATCAACATTTAAGAATAAGTATGTATTGAACAGATGGATTACAGGGAAGGCACTTGGGTAAAgatgaatgtaaatataatgtactAAAtgctggagggggagggggttacgCATACATCCTGTTTGTAGTATTTGCTCTAATCATACCCCTTCCTCCAGTGTGGGGTGTTAATTGAGACTGGGATATTATTACAGCAGATACGATAGTTGAATGAAGGAGGACGTCATAGTGTAACATTTATAAtggtttattataaatgtagtcAAGCAGGAGCACCAACTGAACATAGGTGCACAgattgctttttgaaaatcaattaCATATACAAAGTTTGTCCTGGAGACAAAACATGATTTACAAAAAGCAGGATTTGCATGAAACTACAGGTGTGGTTTCAACACAGTAGGTTGCTCTAAATGTTTGACTAAGTATGTCTTGTAGACAATGTCTCTTTAATCAGTTTATACAGCTTTTATCATGACTAGGTGTGGAATTTAATGGTGTgatttgtg

Function

GO: NA

KEGG:

id description
K14242 NFKBIZ; NF-kappa-B inhibitor zeta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014416 True 3876 mRNA 0.46 12 13291329 13301873

Neighbor

gene id symbol gene type direction distance location
AMCG00014417 NA coding upstream 7035 13276573 ~ 13284294 (+)
AMCG00014414 NA coding upstream 17026 13266017 ~ 13274303 (+)
AMCG00014405 NA coding upstream 45695 13240840 ~ 13245634 (+)
AMCG00014406 NA coding upstream 51219 13239073 ~ 13240110 (+)
AMCG00014401 tfg,LOC102777061 coding upstream 225352 13057865 ~ 13065977 (+)
AMCG00014415 eed coding downstream 21494 13323367 ~ 13331090 (+)
AMCG00014419 NA coding downstream 38314 13340187 ~ 13360020 (+)
AMCG00014418 NA coding downstream 59875 13361748 ~ 13371376 (+)
AMCG00014420 NA coding downstream 148225 13450098 ~ 13451219 (+)
AMCG00014422 NA coding downstream 289047 13590920 ~ 13615018 (+)
G69833 NA non-coding upstream 308895 12980259 ~ 12982434 (+)
G69778 NA non-coding upstream 691016 12600104 ~ 12600313 (+)
G69739 NA non-coding upstream 1507246 11783865 ~ 11784083 (+)
G69722 NA non-coding upstream 1568562 11719318 ~ 11722767 (+)
G69681 NA non-coding upstream 1649877 11641083 ~ 11641452 (+)
G69959 NA non-coding downstream 32341 13334214 ~ 13335185 (+)
G69961 NA non-coding downstream 50460 13352333 ~ 13380404 (+)
G70054 NA non-coding downstream 392942 13694815 ~ 13696871 (+)
G70221 NA non-coding downstream 865573 14167446 ~ 14171012 (+)
G70271 NA non-coding downstream 1164831 14466704 ~ 14467744 (+)
AMCG00014407 LOC107725344 other upstream 39597 13246309 ~ 13251732 (+)
AMCG00014345 NA other upstream 3139416 10147979 ~ 10151913 (+)
G69406 tgfbrap1,LOC102780916 other upstream 3282681 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 5808769 7464503 ~ 7482560 (+)
G68848 NA other upstream 5874735 7413640 ~ 7416594 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 353365 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 887691 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 1000574 14302447 ~ 14356868 (+)
AMCG00014470 NA other downstream 1920041 15221914 ~ 15242333 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other downstream 2373758 15675631 ~ 15685899 (+)

Expression


Co-expression Network