AMCG00014437 (me3,LOC108426042,LOC107748144,LOC107595810,LOC107756775,LOC107695468)


Basic Information

Item Value
gene id AMCG00014437
gene name me3,LOC108426042,LOC107748144,LOC107595810,LOC107756775,LOC107695468
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13377662 ~ 13408576 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014437
GGCATGGCCTTCACCCTGGAAGAGAGGATGCAGCTGGGTATCCATGGCCTGCTACCCCCCTGCTTCCTCACCCAGGACGTGCAGGTCCTCCGTGTCATGAAGAGCTACGAGACCAGGAGCAACCCCCTAGACAAGTACATTCTGCTGATGACCCTGCAGGACAGAAATGAGAAGCTGTTCTACCGCCTGCTGACCTCTGACATTGAGGAGTTTATGCCCATTGTTTACACCCCCACTGTGGGGCTGGCCTGCCAGCAATACGGCCTGGCATTTCGAAGACCACGAGGGCTTTTTATCACCATTCATGACAAAGGCCACATTGCAACAATGCTGGACTCTTGGCCAGAGGAGGACATCAAGGCCATTGTGGTGACTGACGGAGAGCGGATCCTGGGCCTGGGAGACTTGGGTAGCTATGGCATGGGGATTCCTGTGGGGAAACTGGCCCTGTATACAGCCTGCGGGGGAGTGCCGCCTCAGCAGTGCCTGCCAGTGCTTCTGGACGTGGGCACGGACAACCAGAGTCTCTTGGATGACCCTCTGTATATTGGACTGAAGCACAAGAGAGTCAGAGGGAAGGAGTATGATGATCTGATTGATGAGTTCATGCAGGCCGTGACAGACAAATATGGAATGAACTGCTTAATCCAGTTTGAGGACTTTGCCAATTCCAATGCATTCCGCATCCTGAACAAGTACCGGAACAGATACTGCACCTTCAATGATGACATTCAAGGCACCGCCTCCGTCGCCGTGGCTGGCCTCCTCGCTGCCCTGAGGATCACCAAGAACCAGCTCTCCGAACACAAGTTTGTCTTCCAGGGAGCCGGAGAGGCTGCCATGGGCATTGCCCACTTGATCATTATGGCCATGGCTAAGCAAGGCATCCCCCACTCCGAAGCTGTGAAGAAGATCTGGATGGTTGACTCCAAGGGGCTCATTGTCAAGGGCCGGGGACACCTGAACCACGAGAAGGAGCAGTTCGCCCAGGATCACCCGCAGGTCAGGACCCTGGAGGAGGTGGTGCAGATCGTCAAGCCCACGGCCATCATAGGTGTTGCTGCCATTAATGGAGCCTTCACAGAGAAGATTATAAAGGACATGGCCTCCTTCAACGAGAAGCCCATCATTTTTGCCCTGAGTAACCCCACCAGTAAGGCGGAGTGTACAGCTGAGCAGTGCTACCGGCTCACAGAGGGTCGTGGCATCTTTGCCAGTGGCAGTCCCTTCGATAAAGTCACGCTGCCTGATGGACGCACATTCATCCCAGGCCAAGGCAACAATGCCTATGTGTTCCCAGGGGTGGCTCTGGGGGTGATAGCCTGTGGCGTACGCCATATCTCTGATGACATCTTCCTCACCACCGCAGAGGCCATCGCTGAGATGGTGACAGAGGAGAACCTGGCTGAAGGGCGACTGTACCCTCCTCTCAGCACCATCAGGGAGGTTTCCTTCAAAATCGCTGTCAAGATTGTGGACTATGCCTATAAGAAGGACATTGCTTCGTGGTACCCTGAGCCTAAAGACAAAGAGGCCTTCATCCGCTCTCACATCTACAGCCCTGACTACGACTCCTTCTCCCTGGATTGCTACTCCTGGCCGAAGGAGGCCATGGAGGTTCAGGATGTGTAAAACAGCTGCACATAGCCAAGCTCTcctattacatatatatatatctgacaCTGCTGACATATCGACGCAATGCTGACTCGTGCATCTTTAAACTGCTGCATTAGAAGCAGAACAATCAAAATCACCTTTCATCAGGGGGTGATAAAAATACTACTTTGCATTTAAGacaatgttaaaacatttaaatctactttttattttataaatgcaaacTCTTAATGCCACACTGACTGAGGGTGACAAGTTATAACTCCTGAAACAGACTTAATACTCTGCTTTTGCTGGCCAAAAACGTCTCCCCTCAGAAAACAACTAAAGCCTTGTCACCAATTCCACTTGCATGAAGCCTCGAGTCTTCTGCCACCACAGTACGCATCCCAGACTCTCCTGCTAGTACCTCTTTAATGATGATGTGTTCCTACGCATAAAGTTTGGTTTGCAGAGTCTTTCTCAGGCTGTAATTAATGAAGGCCTTCAAAATCCAAGACTATTCCTGGcttcatattttacagttaGTCTAACACTTATCCCTGAGTCTGAGGAGTCTTTTGGGTATTAATGTAGTACTGCAACACtcacatacaaaatattgattacTATTGGTTTTGAGATGCCATAGTTCCCCAATACCCTTTTCAATagaactaatatatatatatatatatatatattaggtgtaggttttgacattttaaattggcaacctttttaaatcattgaaCATGAATATTTCTATTTTAGAACAGTTTCTACTGGGAATGGTTATTTGTAAGTGGCAGGCATAATTGTTGGTATATTATTGCCTACCATACACTGTGTACTGCACTATATAAATGAAGCATGTACCAAATATATTAATCTCATGAATGAAGTCATGAATACTGTGTGGTTAATCATGTTTAAACATGGATTGTCTCTTGGGTCTCGTCTGCCAAAGTAATGTAAAACTTTAATGGTGCGATTTGGACATGTTGTGGCCTGTGCAGCTGAAGTGACACTAATTTTAACATCTACTTTTTATGAAGAATAATTTTACAGTAGGTTTACATATCATTTTCCAGCTGCCAATGGGATGTTCAAATGAAGTGGAATATGTTATCCCAATTGTGttgaaattgatttgtttaattcagaaACCGATAAGCATTGACGGCAGAGTCATTGTTAATTACAATAGTTTATTGGCATTCTATTGCTTCCCATCAGTTCACGGTATTTCGTTATTTTCATTAGTACGTACAAAGGCTCTTAAGCGCACAATCCAGAACAGTTATATTGAATGTTAAggtgttattttgtttcagaaagctgaaggtattgttttttccccaccattAGTTGGCATGCTGTATATCAACTACCACTGACACCTTTGCTGCAGTCCAATCCACTCTCAGGGACTTCAACCAACACATCTGCCCTGTTCTCTCCATTTGGATCGTATGTTCAGTACAGCATTTCAAATGTCCGATAAACCAGAGATGAATATATTCCTACACTGTACAAACAACAGTATGAGGAAAACAGCAGTGATGTTCTTTCAAAAAGCAATTTCAATAAATGTcctttgtaaattgtttttgttgttgtattcaTTTGGATGACAGCATATAAGTGAGGAGTGAACCCCG

Function

symbol description
me3 Predicted to enable malate dehydrogenase (decarboxylating) (NADP+) activity. Predicted to be involved in malate metabolic process and pyruvate metabolic process. Predicted to be active in mitochondrion. Is expressed in pectoral fin musculature and pronephric duct. Orthologous to several human genes including ME3 (malic enzyme 3).

NR:

description
PREDICTED: NADP-dependent malic enzyme, mitochondrial

GO:

id name namespace
GO:0006108 malate metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0051287 NAD binding molecular_function

KEGG:

id description
K00029 E1.1.1.40, maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014437 True 3263 mRNA 0.46 13 13377662 13408576

Neighbor

gene id symbol gene type direction distance location
AMCG00014409 rpl24 coding downstream 112113 13262379 ~ 13265549 (-)
AMCG00014410 NA coding downstream 116673 13251935 ~ 13260989 (-)
AMCG00014413 txnl4b coding downstream 135010 13241826 ~ 13242652 (-)
AMCG00014408 NA coding downstream 140134 13208745 ~ 13237528 (-)
AMCG00014411 impg2b,LOC108432621,LOC107704545 coding downstream 173855 13175211 ~ 13203807 (-)
AMCG00014434 LOC106575972 coding upstream 34694 13443270 ~ 13473171 (-)
AMCG00014432 NA coding upstream 69772 13478348 ~ 13487613 (-)
AMCG00014438 NA coding upstream 90150 13498726 ~ 13527602 (-)
AMCG00014430 NA coding upstream 122619 13531195 ~ 13536369 (-)
AMCG00014429 NA coding upstream 288759 13697335 ~ 13709287 (-)
G69973 NA non-coding downstream 1783 13304426 ~ 13375879 (-)
G69950 NA non-coding downstream 75283 13301924 ~ 13302379 (-)
G69896 NA non-coding downstream 291317 13085363 ~ 13086345 (-)
G69849 NA non-coding downstream 407107 12970253 ~ 12970555 (-)
G69759 NA non-coding downstream 1497206 11879097 ~ 11880456 (-)
G70034 NA non-coding upstream 214539 13623115 ~ 13623381 (-)
G70063 NA non-coding upstream 286181 13694757 ~ 13696971 (-)
G70091 NA non-coding upstream 350650 13759226 ~ 13761420 (-)
G70094 NA non-coding upstream 361601 13770177 ~ 13772272 (-)
G70169 NA non-coding upstream 510945 13919521 ~ 13921330 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 243911 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 1710125 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 2240576 11125029 ~ 11137086 (-)
G69537 NA other downstream 2579515 10796716 ~ 10798147 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 3316432 10058097 ~ 10061230 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 3313497 16722073 ~ 16737877 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 4038292 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 4180691 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 4582075 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 5793227 19201803 ~ 19203567 (-)

Expression


Co-expression Network