AMCG00014438


Basic Information

Item Value
gene id AMCG00014438
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13498726 ~ 13527602 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014438
CTGCTGATGAGCCTGGCAGCGTGAGCACACCCACAGCCACAATAGTACCGTCCCGTTAGCCCAGGATTGACAGTTGTACTTCATTATTGTGGCGAGAAGCGCTCCGTGGAGTGAGACGAGCGCTTCGCCAGGACAATGACCAGCAACTGCTTTTACAGGAAAGCGCTATAATGTGGACAATGGATGTCTTCTGGCTGTTGTGGATTCCTTTCCTAAGCTTAACAGTGGGGAGGTGTGCAGCTGTGCATGTGAGAATGCGGGAAGATAAGAAGTTTGCCATGCTGTTCCAGCCGGTAGTCCTGGAGTGCCAGTACTCCACACAGTCCACTCAGCCTCCGGTGGTGCAGTGGTGGTACAAGTCCTACTGCCACGATCGCACCAAGGAGGCCTTCAGCTTCTCAGACAGCCTGGGCGTCCCATCCTCAGAGACCAGCCCCTCCTCTCACTTGGACTGCGCCGACAACAGTCGTACGGTGCGCGTTGTGGCGTCCCGGCAGGGCACAGCCATCACACTGGCTGAGTTCTATAAGGGAAGAGACATCACCATCATCAACAAGGCCGACCTCAGGATTGGAGAGCTGCGGTGGGGTGACAGTGGGGTCTATTACTGTAAGGTGGTGATTTCAGATGACTTAGAGGGAATAAATGAAGAGAAGGTGGAGCTGCTAGTGCTGGGTAAGACAGGGGTGCTTGATGATTTCCTGCCCGATTTTGATGTGGAGGTTATGCCAGAGTGGCTGTTTGTGGGTGTGGTAATTCTGGGAGGATTCACCTTCATCTTGTTCGTTGGGATCTGCTGGTGCCAGTGCTGCCCACACAGCTGCTGTTGCTACCTCCGCTGCCCCTGCTGCCCAGACACCTGCTGCTGCCCCCGACACTTGTACGAAGCTGGTAAAGCCGGGAAGACAAGTGCTACCCCACACATTGCCGCTATCTACCCTCCGTACTATGTGCCAAATGTGCCCATGGTTCCCATCGGACCTCCAGCATTGTTGGATCCAAAGATAGGAGCTCCAGCTGTAGAGAACAATGTGACAGGCGCAGTGCGCAGTGGGTACCGTATCCAGGCCAGTAAGGAACAGGACTCTATGAAGGTTCTGTACTACGTAGAAAAGGAGCTTGCACAGTTCGATCCTGCCAAGAGATCATATGAGAAATCCAGCAGCATGTCCGAGCTCAGCTCCCTGCACGAAGGAGACACGGATTTCCGTCAGTCCTACCGCAAGGTGCAGAGGAAGGCCCTCCCGGCCATCGAGGACAGAGACGAAGAGTCTGAATTCAGAGCTACCTCGTCTGTGCAGGGCCGCCGGTCGGCACGCTACCCACTCCGAACGCACAGATCAGACGAGCAGTCCCAGAATAGAAAGGCCTTCAGGTCCGATGGGCGAACGGGCTCCCTGGATGAGCTGGAGGAGTTTGCCCTGTCATACGACCAGAGACCAAGGCGGGGCGACTACAGGGATGGAGAGCGGGAGTACACCCTGGACATCCAGAGCAACGAGCACTGTCCTCCGCTTCGGGAACAACACCGCTACCACGATGATGAGCATACCGAGGCCTGGCTGGACCGGCACCAGTACCGCAAGGCCTTTCCAGAAGACCACTACAGGAAGGGTGAGCGCGGAGGATATGAGCCAGAGAGGGGGAGGCAGCACAGCCCTCCATCGCCCAAGAGGAGGAACCCCAGCGAGCGCTGCCCCACGCACCACCTGGGCAGCAGCAAGGGTTACGACAACACCTTCCTGACCAGTGTCCTGGAGAGGAAAGCCCGCTTGCGAGTGCCAGACGAGAGCTTCAACAGCGAGACCCCCTCCAAGTCCAGCTCCAAGAAGAGCGGCGACTGCTACTACAGCCGCTCCCCCAGCTGCAGGCCCGAGGAGGAGGACTGCCTGCCGCCTTACTCGGAGATCGAGGGCGAGAGGAACCGGTCGCTGGCACACTCAGCCAGGCCTTTCTCCTACACTAGGGACCCTCAGAGCAGTGCACACACGTTACAGGACAGGAGGGAAGACAGGGAGAAGCTCAGGAAGACG

Function

GO:

id name namespace
GO:0007492 endoderm development biological_process
GO:0031016 pancreas development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014438 True 2033 mRNA 0.57 9 13498726 13527602

Neighbor

gene id symbol gene type direction distance location
AMCG00014432 NA coding downstream 11113 13478348 ~ 13487613 (-)
AMCG00014434 LOC106575972 coding downstream 25555 13443270 ~ 13473171 (-)
AMCG00014437 me3,LOC108426042,LOC107748144,LOC107595810,LOC107756775,LOC107695468 coding downstream 90150 13377662 ~ 13408576 (-)
AMCG00014409 rpl24 coding downstream 233177 13262379 ~ 13265549 (-)
AMCG00014410 NA coding downstream 237737 13251935 ~ 13260989 (-)
AMCG00014430 NA coding upstream 3593 13531195 ~ 13536369 (-)
AMCG00014429 NA coding upstream 169733 13697335 ~ 13709287 (-)
AMCG00014428 NA coding upstream 201101 13728703 ~ 13742819 (-)
AMCG00014436 pcid2 coding upstream 257313 13784915 ~ 13790135 (-)
AMCG00014435 NA coding upstream 300853 13828455 ~ 13846485 (-)
G69973 NA non-coding downstream 122847 13304426 ~ 13375879 (-)
G69950 NA non-coding downstream 196347 13301924 ~ 13302379 (-)
G69896 NA non-coding downstream 412381 13085363 ~ 13086345 (-)
G69849 NA non-coding downstream 528171 12970253 ~ 12970555 (-)
G69759 NA non-coding downstream 1618270 11879097 ~ 11880456 (-)
G70034 NA non-coding upstream 95513 13623115 ~ 13623381 (-)
G70063 NA non-coding upstream 167155 13694757 ~ 13696971 (-)
G70091 NA non-coding upstream 231624 13759226 ~ 13761420 (-)
G70094 NA non-coding upstream 242575 13770177 ~ 13772272 (-)
G70169 NA non-coding upstream 391919 13919521 ~ 13921330 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 364975 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 1831189 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 2361640 11125029 ~ 11137086 (-)
G69537 NA other downstream 2700579 10796716 ~ 10798147 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 3437496 10058097 ~ 10061230 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 3194471 16722073 ~ 16737877 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 3919266 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 4061665 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 4463049 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 5674201 19201803 ~ 19203567 (-)

Expression


Co-expression Network