AMCG00014456


Basic Information

Item Value
gene id AMCG00014456
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 14189564 ~ 14205014 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014456
ATGCATACGGATGTGTTAGGTGTAAGAATTTCTCCTCCATCTGTGGAGTTTTTTGACGTCAAAGCAGGAGACTCATACACAGCTACTGTGACAGTGAAAAACATCAGCAAGTCGGGCAAAAGAATCCGAATCCATGGACCTCAATCACAGCTCTTCGAGTTGGTGCTGCTGAATCCAGACACAGCTGTCGCGCCTGGACTGTCACTGACGGCGACCCTGCAGTTCTCGCCAGACAGAGATGAAGATCTCAAAGAGCGATTGATTCTGGTCTCCGATGACGATGTGCTGGAGATCCCGATTTTAGCGTACGTGGATTCAGAAGTGGACTTCGGCTCACTTGTCGCAAACAGCAAGGTTATCAGTGAGGAGATACATATTTTCAACCATGGATCTGCCCCagGTGCTTTCAAAATCGCATATAAAGGAGCTTCGCCTGTCAACATTTCTCCTACCAGCGGGATTGTTGAGCCCAAAACAATTCAGCTAATTAAAGTTGAGCTGTGTACAAACCAGCCAATGACTGTCAATGAAGTGGCAAAAGTTAAACTGCAGGATAGTgaggatacatttttaaaaatcaaagctGAAGTGGTGGAGCAGGCTTTGGAACTGTTAGCCTCCACTGCCAGTGGGGAGAGACTGGAATTTGTGAGGTTTGGAGCTGCGTACTTTGGAACAGCCAAGCTGGAGCAAGTGGTTTTGTTCAACAACAGCCCCCAACCCTGTGACTGGGTGGCAGTGCTGCAAGATGATGCCATTGGTACTGAAGTGGGCACTGATATAGAGAAGAGTACAGCTGCTGCTCTACTGCAAATGGCGCTGAGAAATAAAGGGAAGGAGGTTGATGCTGCAGCACTGATCTCATGTCTTCCCAATGAAGGCCATCTTGGGCCTTATGGAAAGATCATGCTTTCCCTGTGCTTCAGTCCGGCATACATCAgGAATCTAGAGGATGAAACTAATTGTGATGAACCAGCAAAACAGGACTATTCCCTTTTCATGAAATTTGAGATTGTTGGCAGCAAAGACAGTTTCATTCATGACCAAACCAGTGGAAGACATCCCAACAatgaaaataaactgaagtgtACTGAATTAGCAGTAACCGGGACCGGTCTGCCAGTGTCTCTCACTCCTACTCCGGGACCATGCTTTGATTTTAAGGAGATCTATATGGGGGAACGTGTTGAGATGCTGTGTGTGCTCCAAAACAGGTCCCCATTGCTTCCTGTAGTCTTCAGATTCCAAAAAACAGCTAATTTCATCATCTCTCCTTCAAAGGGGAAAATAGACTGTGGACTGCAGCAGgatGTAGTATTGTCTTTTGCTCCGCATCAGATTGGATCTTTTACAGTTTGTCAGTTAATAGACATATTTGGCCAAGTGGCAGTGCTTGGCAGATCCTCTGTACAGCTGAAGTTCAGGCCTTTCCATCAGATTGGTCTCCGCTTTTCTGGCACCTGCAATCCTCTGTCCAAAAAGATACAACCCAAGTTCAACCCAGgcATAACCCCTGCAGTCACCAATGAGACAGGGCAGTGTGTGGAGGTAGACGCGGAGAAGCTGGCGAACTGCTCAAACATGGTCCGGATGGCAGTGCTGAGTGCTTCTAAAACAGGCATTCATGCCCATAGGAGGAGCAGGAGTCTGGAGAGAAACAAGCTGATTGCTTTTCCCAATGATCGCTCTGCCAGTATCAGGCCACACTCCAGAAATGAGCATTACAGGACAATCTTTACCAAAGCTGAACGGTACAATTATGTGGATCCTGAGTTTGCCTATACTGAAGAAgaggaaaagcaaagaaaagcaCATAAAGAGTATTACCTCCAGTTCATTCATAATCTAAGAGATGTACGTCTTCAAAAGGCAAAAGAAAGAGAGCTGGGGGACACCAGAGATGAAGTTGACATTGGCATCAAACCAGCAGCAGGACTGCGGCCCAGAAGACTCTTGCTTCGTGACATTGAATCGGGAAAGGTAGAAGAAAGGTCTCTTGGGAGAAGTAGGCTCTTAACTACATGTACCCTGGCAGCAATGGAAACAAGGTCCACATCCAGACCAGTCAATGATGGGATTAATGTGGTGCCTTCAACCACTCAAGAAAAAGAAGACTGTAGCAAAACCTTGACAGCACAGCAGCTTCATCAGGTTATCATTGgaCCCTCTACCATAAACTTTGGTGACGTGTGTGTGCAGTCAGTCTCTTCAAGACAGCTGAGCATTGTGAATAACCTGCCAGTGTATGTCTGGGTACAGGTGGAGATTGACTGTCAGGAGCTGCAACAGTCTAGTCCTCTGTCTCACGTTGTACCACCTGTATCCAGAGCTTACTTGCCCCTTGTGTTTGAGACCAGTAAATTGGGCAAGTTCCAAAAGTCAGTTACCTACACGGTTAATAAGAAGCATGCTGGCCATATCCTGGTGGTGGGCACAGTTGTCCCAGTTTCTTTGGAGCTCTCAGCTGCCGAGATAGTTCTCAGCCCGAGCCACAACTTCCTGGCAGAAGCCGGGTACAGAGGCACTGTCACACTGACGAACCCGAGAAACCACCCGGCTGAGTTCACCTGGAAACCCATTATCACTGAAAATGGCATAGCTTTCTCCATTCGACCTGCTACAGGAACTGTGGAGGCCTACAGGGAGCTGGATTGTGAAGTGGTGTGGCATCCCTCTTACTACTCCCCACTAGAGGGTGTCTTTGACCTGTGTGTTCACCACGGCAACACCACCGGTCTTAAATGTGTTGCTAAGGTTGGTTCCACAAATGTGCAGTTAGTTGAACACCATATTGTATTTGGAGCAGTGGCTCAAAATTTTACTACCGTCAAAAGGGTTGTTCTTCGAAACACAGGACAAAACCATGCATACTTTCAGgtGTTTGATGTGTACCCACTGCCCGGGATGAGTGTGACCCCTTCAGAAGGTGTCGTGCCAGTGGGGGGGCAAAAAGAACTTGAGGTGCACTTCACCCCCAGCGCAGTTGTGAAATTTGACACCAGAGTGGAGATTGCAGTACGAAAAATGAAACCCTTGGAGCTAAGGATTGGTGGATCTGTGGAGCCCCCTCAAGTAGATATCAATGTGAAAAATTTCAACTTCCATGGCGTATATTCCGGTTCTACCAAAGCAATTCCATTCACTCTTCAGAACAAATCTGCTGCTAGGGCGAGAGTGGAGTTTGATTTGTCAGAGCACAAAGACTTTGCTGTAGTGTTCAGTGACCACTCT
>TU87766
TGCTTCAGTCCGGCATACATCAgGAATCTAGAGGATGAAACTAATTGTGATGAACCAGCAAAACAGGACTATTCCCTTTTCATGAAATTTGAGATTGTTGGCAGCAAAGACAGTTTCATTCATGACCAAACCAGTGGAAGACATCCCAACAatgaaaataaactgaagtgtACTGAATTAGCAGTAACCGGGACCGGTCTGCCAGTGTCTCTCACTCCTACTCCGGGACCATGCTTTGATTTTA
>TU87767
ACAATCTTTACCAAAGCTGAACGGTACAATTATGTGGATCCTGAGTTTGCCTATACTGAAGAAgaggaaaagcaaagaaaagcaCATAAAGAGTATTACCTCCAGTTCATTCATAATCTAAGAGATGTACGTCTTCAAAAGGCAAAAGAAAGAGAGCTGGGGGACACCAGAGATGAAGTTGACATTGGCATCAAACCAGCAGCAGGACTGCGGCCCAGAAGACTCTTGCTTCGTGACATTGAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014456 True 3231 mRNA 0.47 20 14189564 14205014
TU87766 False 244 lncRNA 0.43 3 14193779 14194433
TU87767 False 244 lncRNA 0.42 2 14197980 14199308

Neighbor

gene id symbol gene type direction distance location
AMCG00014447 NA coding upstream 26242 14162125 ~ 14163322 (+)
AMCG00014446 NA coding upstream 28722 14160636 ~ 14160842 (+)
AMCG00014445 cpox,LOC107717573,LOC107585846,LOC107657924,LOC107550392 coding upstream 31838 14151299 ~ 14157726 (+)
AMCG00014443 NA coding upstream 46491 14138406 ~ 14143073 (+)
AMCG00014444 tpp2,LOC107665822 coding upstream 84070 14085512 ~ 14105494 (+)
AMCG00014458 NA coding downstream 18502 14223516 ~ 14235412 (+)
AMCG00014460 NA coding downstream 32997 14238011 ~ 14241495 (+)
AMCG00014459 NA coding downstream 166131 14371145 ~ 14380019 (+)
AMCG00014457 tmem47 coding downstream 247512 14452526 ~ 14462108 (+)
AMCG00014462 dmd,LOC106574978 coding downstream 479719 14684733 ~ 14692283 (+)
G70221 NA non-coding upstream 18552 14167446 ~ 14171012 (+)
G70054 NA non-coding upstream 492693 13694815 ~ 13696871 (+)
G69961 NA non-coding upstream 809160 13352333 ~ 13380404 (+)
G69959 NA non-coding upstream 854379 13334214 ~ 13335185 (+)
G69833 NA non-coding upstream 1207130 12980259 ~ 12982434 (+)
G70271 NA non-coding downstream 261690 14466704 ~ 14467744 (+)
G70286 NA non-coding downstream 974831 15179845 ~ 15180820 (+)
G70378 itm2b,LOC108430053 non-coding downstream 1145628 15350642 ~ 15430852 (+)
G70409 NA non-coding downstream 1245764 15450778 ~ 15451268 (+)
G70413 NA non-coding downstream 1295544 15500558 ~ 15500832 (+)
AMCG00014423 pou2f1b,LOC107748141 other upstream 500376 13655238 ~ 13689188 (+)
AMCG00014407 LOC107725344 other upstream 937832 13246309 ~ 13251732 (+)
AMCG00014345 NA other upstream 4037651 10147979 ~ 10151913 (+)
G69406 tgfbrap1,LOC102780916 other upstream 4180916 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 6707004 7464503 ~ 7482560 (+)
AMCG00014461 NA other downstream 97433 14302447 ~ 14356868 (+)
AMCG00014470 NA other downstream 1016900 15221914 ~ 15242333 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other downstream 1470617 15675631 ~ 15685899 (+)
AMCG00014508 NA other downstream 1924465 16129479 ~ 16139032 (+)
AMCG00014525 NA other downstream 2260607 16465621 ~ 16469209 (+)

Expression


Co-expression Network