AMCG00014457 (tmem47)


Basic Information

Item Value
gene id AMCG00014457
gene name tmem47
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 14452526 ~ 14462108 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014457
TGGCAAATTGCTACCCTGGCCTTGCTTCTGGGCGGTGCAGCCATCATCCTCATCGCCTTCCTGGTGGGTTTGATCTCTGTCTGCGTGGGCTCTCGGAGACGCTTCTACAGGCCAGTCGCTGTCATGCTTTTCGCTGCAGtggtTCTTCAAGTATGCAGTCTTGTCCTGTACCCCATCAAGTTCATCGAGTCCGTTAGCTTAAGAATATACCATGAATTCAACTGGGGATATGGCCTCGCCTGGGGGGCCACCATCTTTTCCTTTGGGGGTGCAATCCTATACTGCTTGAACCCCAAGAActatgaagattattat

Function

symbol description
tmem47 Predicted to be involved in cell-cell adhesion. Predicted to be located in adherens junction and membrane. Predicted to be integral component of membrane. Predicted to be active in cell-cell junction. Is expressed in gill; heart; integument; and pleuroperitoneal region. Orthologous to human TMEM47 (transmembrane protein 47).

NR:

description
PREDICTED: transmembrane protein 47

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014457 True 315 mRNA 0.51 2 14452526 14462108

Neighbor

gene id symbol gene type direction distance location
AMCG00014459 NA coding upstream 72507 14371145 ~ 14380019 (+)
AMCG00014460 NA coding upstream 211031 14238011 ~ 14241495 (+)
AMCG00014458 NA coding upstream 217114 14223516 ~ 14235412 (+)
AMCG00014447 NA coding upstream 289204 14162125 ~ 14163322 (+)
AMCG00014446 NA coding upstream 291684 14160636 ~ 14160842 (+)
AMCG00014462 dmd,LOC106574978 coding downstream 222625 14684733 ~ 14692283 (+)
AMCG00014465 NA coding downstream 257786 14719894 ~ 14750619 (+)
AMCG00014463 NA coding downstream 305379 14767487 ~ 14811135 (+)
AMCG00014466 NA coding downstream 361684 14823792 ~ 14828121 (+)
AMCG00014467 NA coding downstream 458305 14920413 ~ 14989067 (+)
G70221 NA non-coding upstream 281514 14167446 ~ 14171012 (+)
G70054 NA non-coding upstream 755655 13694815 ~ 13696871 (+)
G69961 NA non-coding upstream 1072122 13352333 ~ 13380404 (+)
G69959 NA non-coding upstream 1117341 13334214 ~ 13335185 (+)
G69833 NA non-coding upstream 1470092 12980259 ~ 12982434 (+)
G70271 NA non-coding downstream 4596 14466704 ~ 14467744 (+)
G70286 NA non-coding downstream 717737 15179845 ~ 15180820 (+)
G70378 itm2b,LOC108430053 non-coding downstream 888534 15350642 ~ 15430852 (+)
G70409 NA non-coding downstream 988670 15450778 ~ 15451268 (+)
G70413 NA non-coding downstream 1038450 15500558 ~ 15500832 (+)
AMCG00014461 NA other upstream 95658 14302447 ~ 14356868 (+)
AMCG00014456 NA other upstream 247512 14189564 ~ 14205014 (+)
AMCG00014423 pou2f1b,LOC107748141 other upstream 763338 13655238 ~ 13689188 (+)
AMCG00014407 LOC107725344 other upstream 1200794 13246309 ~ 13251732 (+)
AMCG00014345 NA other upstream 4300613 10147979 ~ 10151913 (+)
AMCG00014470 NA other downstream 759806 15221914 ~ 15242333 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other downstream 1213523 15675631 ~ 15685899 (+)
AMCG00014508 NA other downstream 1667371 16129479 ~ 16139032 (+)
AMCG00014525 NA other downstream 2003513 16465621 ~ 16469209 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other downstream 2902690 17364798 ~ 17487050 (+)

Expression


Co-expression Network