AMCG00014470


Basic Information

Item Value
gene id AMCG00014470
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15221914 ~ 15242333 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014470
AGCGGGGCTGCCAGCAGGGCGCTGCACAGGCTCACACCGTCCTCCAATCCGGGACAAAGCAGACACGGGAAATAATGCCAACTAAATATGTCGTTATCctctgaaatggaaaagaacTCCACTGAAGATGATGGTGTGGATTCAGGGGCAGAGACCGGAGGGTCTGACTACAGTCCCATGTCTTCTGCTAGCAGTGTGCTGTCAGTGGGTGACCTACACGATCCCTTCCTGGTCAGCGTGCATATCATCACGGACCCGGGGAATGCCAAGACCCTGCAGAAGGCGGTGGATGGCGTGCTCGCCTGGATCCACCCAGAGCTGCAGCTGTTCCGGGTATCAGAGCGGGGGGCCTGGAGGAGAACCAAGAGGCCCAGGTCAGGAGGGCTGAACCAACCCGCGATGGCCGTCATCCTCTTCCTGCAGGAGGAGTACGGCGAGCAGCAGGTCCTGCAGCTGCACCAGGCCCTGCAGCGCCCACCCTGGCAGTACCACCACACCGAGAGGGTGAACGGACGCCTGCTGCCTTACATGCCCGGCAGCCAGGACTTTTTCACTCTGACGCCCGGCACACCACTCTGGGCTGTGCGGCAGGTGCACTACGGCAAGGAGATTGTGCGCTTTACCGTATACTGCACCCATGACAACTACGCCGACATGGTGAAGATGTACCAGCTGGTGCTGAAGAGGGAGCTGGCCCAGAGGAAGGGCGACTTCTGTTTCTTTGTGGTCTACTCCAACCCCGACACCGAGATCCAGCTCTCCCTCAAGAGGCTCCCCAAGGGCCAGAACCCCACCCCAACAGATTCTGCCATTATGGAGTTCCGGATCAAAGACATTGGGCAGCTGGTGCCCCTGCTGCCACATCCCTGTACCCCCATCAGCGAGGTGCGCTGGCAGACTGAGGACTACGATGGCAACAAGATACTCTTGCAGgtgCACGGCTCCTCCAGACACTCTCGGCGGAGGCACACAGTTGCCCAGTTTGCCCCAGTGCCTGCAGATACTGACCCCgcacccacccccaccccccaagtcCCCTGCATGCACCTGGGACGAGGCCCAGTCTCCTACAGAAACAAACGCTACAACAGATCAACCTCACGGCCCCGGGCCCAGAACCGCCTCTCCCAAAACGACCTGCCGAGTGTCTGCGGGGGGGAGGAGGCGGCGAGCAGGGGCCGTAAGCCGGAGTTGGCGGGGTCCTGGTGGGCCGGCCATCGGACTCGCTCCCTCTTCTGCCTCcccacagccagcagcagccGCTCTGCCTCCCCCGCGTCCTCGCCACGCTCCTCCCTGGTCCTCGGCTCCCGGCTCAACGTGGACGCACTGGTGGGGGCCGAGGAGACGGACGTGGACACGGGAAACAAGCTCAGCAGCGTGGATATGTCAGTGGTGTCCGCTTACGTGCGGccctcctcctgctccagcaACAAGAGCATACCCCAACCACCACCACGGCCCAGACCCCTCTCTGCACATAGCAACCCTGTCCCATCTTTCTCCGGGCTGTCCTGTCGCACCCCGCCACCAGCCCTCGTCCACAGCTACCTCCGCTGCCATTCGACTTCCCCCCTACCCTCCATTCTCCGCCCCCCCAGGCCTCACAGCGCCTGCTACCCCCTGTGCAGACTCTCACCCTCGGCTGCGGACAGCGGCCATGGCACCGAGACTGAGAATGGCTCCCCCAGAGAGGGGGCGGCTGACGACGATGAGCAAGAGTTCTACATCTAGACACCCCAACCAAGAGAGCACCACCTTTCGGTACTGAGGCAAAATGAGAATGATGCAGAACTTCACAGCACCCAGGCGGCGCTGGATAAAAGTGCACCGTGCATTTTCCCCACTGCTCTCTCTATCTTAAAACATGCTGACAGAGAATGGGTGTGGAAATCGAAGTCGTTTCCCAGCAATCTCTCcaagagaaacaagaaaaggaaagataCACTGGGCTGTTCAAAGCAAGTGTCATTCAAAGTATGCAAGAAACTCATTCAGTATTCTATGAATCAGAATGTTATGTACAATTACCGTTTTTATAGCACTGTTCTAATTCTAAAAACAAAGTTCgtgaaattttaaaaagtagtaGGCTAATATCTAAAATTCCAAAGGCTATATAAGTTATAAGTAAGAGTAAGTGCAAGATTTTAATAACAtgaaggaatatatatatttatatatatattgagggGCAAGTGTGCTGAGAGCCAAAGAGGTACTGAAGACTTCATGCAAACAGGTTGACTTGGAAAGCATTCTGCATTAATGAGCGGCAGGGAAAGCCCCAGTTTTGTTCCTGGGGGCTTCCTGTATCTGCCTTTTACTTCCCATACTGAGGGGAGAATGGGGGCTTCAGGGAATAATCATCCCTTCCATTCTGAAATCCTTCAGTACATGGCTCTGGAAGTGTTGTGTCCACTTATCTGTTTATGCTCACAAGGTGAATGAAATGGAATGGGATGAATCCGACGGCATCAATACACTGAGTTCTGCTCGTCTGCATCAATAAACACAATCAGATGGCATGCAAGAAAAGTGCGGAAACAAAGGAGAATTTCTAGTTGTTCTACCCtacaatgtgtaatttaaagatCAATAGATAATGtggtattgtttaatttataccATTTATTATCTAGAAATAACTTTTTGTACTGGAATATACAGACAAACTACAACATGATATGAAGGCAGCtgagttttttgttctttatacaACACTGCCCTCCCCCACTTCTGTGAAACTGAGTACTTCATCGTTTGCCTAAAGGAGATCAATTCAAACAATTCCTTTTACAACTATAGCGTGTTAGCGCCCCCTTGTGGAAAATAACAGGAGAGTCAAACCAGATGTTCTTTGTGCATTAACACTGTATATAACTGGACCTTTtagatatttaatttgttaaaatgttttacaattgaATTTACTTTTAACACTATAgataagtgtatttatttatatttattttgtttacaggaaTTTGgatatattcaattaattaaaaaatacaagaaatatcCTAAACACATTACATGTAAATTGTATAGATTCTGAAGGTTTTTAACAAATTACCCCCCCAGGGTACAGTGACATTATGAAAAGCTATTATACAAACACTgtataatattcaatattcaattcaaGGTAACTTTGGTATATTAAGGTATGAAAAGGAAGAAACgaaacaagaaacacatttaatgacaaaaagaagaaataaagagaTAGATGTGTGTGAATACATATCTATAACTGACATTGTTGCTCAGTATACAGAATAAATgattagcaaaataaatatattcaatgcttttttaatttgccGATTTAGACTTTAAATTCTAatttttatattgaattatCGCTCAACTTCCTAAtgtaaagattatatttttatagcaaCGCTTCTAATTTTTATATCTGTACGGAGTGTAAATACTTTTGCttattttcattgtcttttttttttttaaacattgtgtgtgGTCATGTAGAttctactgaaaaaaaaaaaactagaaaacgTCATCATGTTTCAGGTCCTGTTGGCTTTGTATTGGCATTATGTTCTGTATGAAATAATGAAAGGCCAGAGGTATGTGCACATGTTGTTTGCTCACAGCATAAGCGGTGTCAAAATGAGATCAATAAATGTAGACGTCCACTGAATCATGAAAGTAATGAAGCATTGTGTTTTCCATACATAGAAAAATACTAGAGCTGTCACTtggcaatatttaaaaaaaaaccaggCCTTCATTTTCAGTCCTGGTCATCTGAAATGCAATAATATGGAACACAGTTTTATTGAAGAACTctatagataaaaaaaatatattcatctGATAAGGAGGGAGGCGATCTTTGGCTTATCATGTCAAAATCATTCTCCGCATTGAGGCGGATATACAATACTGggttttcacagcactgcagaACAAAGCAAGCTTTAGCAGCGAAAACAAGTCAATGTAGCCTAAGTAACAAAGGGTGTCTTTTACacagataaaacaaatcaaaaatgcCTTTGTCTCTCAAGGTCGGGAGTCTAGCATCCTTTCAGACACTGCAGTCTCTCCCATGCAGACTTCTTAAACTCTCATCCTTCTTGTTGTAGTTTACTCAGATATCTGCCATGGGAAACTGCCTCCTACAATATGTGTATACAACAGAAAAGCTAAAGTACAGTGGTAGAAAGGGCCTTGTATAGCTGCGGTGTGCTCAAATCTGACCGCTTACTTTCGGTTTACTTATGGAACTCAGCACCTATGAACAAACTATTGTTTTATCAACTGTTTCATGAACTGTAATGAATGTCTCCTTGGTTGACTGTActgtatgcaaaaatataaactgtaaatgtgGTAAATGTGtg
>TU87887
TAGACACCCCAACCAAGAGAGCACCACCTTTCGGTACTGAGGCAAAATGAGAATGATGCAGAACTTCACAGCACCCAGGCGGCGCTGGATAAAAGTGCACCGTGCATTTTCCCCACTGCTCTCTCTATCTTAAAACATGCTGACAGAGAATGGGTGTGGAAATCGAAGTCGTTTCCCAGCAATCTCTCcaagagaaacaagaaaaggaaagataCACTGGGCTGTTCAAAGCAAGTGTCATTCAAAGTATGCAAGAAACTCATTCAGTATTCTATGAATCAGAATGTTATGTACAATTACCGTTTTTATAGCACTGTTCTAATTCTAAAAACAAAGTTCgtgaaattttaaaaagtagtaGGCTAATATCTAAAATTCCAAAGGCTATATAAGTTATAAGTAAGAGTAAGTGCAAGATTTTAATAACAtgaaggaatatatatatttatatatatattgagggGCAAGTGTGCTGAGAGCCAAAGAGGTACTGAAGACTTCATGCAAACAGGTTGACTTGGAAAGCATTCTGCATTAATGAGCGGCAGGGAAAGCCCCAGTTTTGTTCCTGGGGGCTTCCTGTATCTGCCTTTTACTTCCCATACTGAGGGGAGAATGGGGGCTTCAGGGAATAATCATCCCTTCCATTCTGAAATCCTTCAGTACATGGCTCTGGAAGTGTTGTGTCCACTTATCTGTTTATGCTCACAAGGTGAATGAAATGGAATGGGATGAATCCGACGGCATCAATACACTGAGTTCTGCTCGTCTGCATCAATAAACACAATCAGATGGCATGCAAGAAAAGTGCGGAAACAAAGGAGAATTTCTAGTTGTTCTACCCtacaatgtgtaatttaaagatCAATAGATAATGtggtattgtttaatttataccATTTATTATCTAGAAATAACTTTTTGTACTGGAATATACAGACAAACTACAACATGATATGAAGGCAGCtgagttttttgttctttatacaACACTGCCCTCCCCCACTTCTGTGAAACTGAGTACTTCATCGTTTGCCTAAAGGAGATCAATTCAAACAATTCCTTTTACAACTATAGCGTGTTAGCGCCCCCTTGTGGAAAATAACAGGAGAGTCAAACCAGATGTTCTTTGTGCATTAACACTGTATATAACTGGACCTTTtagatatttaatttgttaaaatgttttacaattgaATTTACTTTTAACACTATAgataagtgtatttatttatatttattttgtttacaggaaTTTGgatatattcaattaattaaaaaatacaagaaatatcCTAAACACATTACATGTAAATTGTATAGATTCTGAAGGTTTTTAACAAATTACCCCCCCAGGGTACAGTGACATTATGAAAAGCTATTATACAAACACTgtataatattcaatattcaattcaaGGTAACTTTGGTATATTAAGGTATGAAAAGGAAGAAACgaaacaagaaacacatttaatgacaaaaagaagaaataaagagaTAGATGTGTGTGAATACATATCTATAACTGACATTgcaaaataaatatattcaatgcttttttaatttgccGATTTAGACTTTAAATTCTAatttttatattgaattatCGCTCAACTTCCTAAtgtaaagattatatttttatagcaaCGCTTCTAATTTTTATATCTGTACGGAGTGTAAATACTTTTGCttattttcattgtcttttttttttttaaacattgtgtgtgGTCATGTAGAttctactgaaaaaaaaaaaactagaaaacgTCATCATGTTTCAGGTCCTGTTGGCTTTGTATTGGCATTATGTTCTGTATGAAATAATGAAAGGCCAGAGGTATGTGCACATGTTGTTTGCTCACAGCATAAGCGGTGTCAAAATGAGATCAATAAATGTAGACGTCCACTGAATCATGAAAGTAATGAAGCATTGTGTTTTCCATACATAGAAAAATACTAGAGCTGTCACTtggcaatatttaaaaaaaaaccaggCCTTCATTTTCAGTCCTGGTCATCTGAAATGCAATAATATGGAACACAGTTTTATTGAAGAACTctatagataaaaaaaatatattcatctGATAAGGAGGGAGGCGATCTTTGGCTTATCATGTCAAAATCATTCTCCGCATTGAGGCGGATATACAATACTGggttttcacagcactgcagaACAAAGCAAGCTTTAGCAGCGAAAACAAGTCAATGTAGCCTAAGTAACAAAGGGTGTCTTTTACacagataaaacaaatcaaaaatgcCTTTGTCTCTCAAGGTCGGGAGTCTAGCATCCTTTCAGACACTGCAGTCTCTCCCATGCAGACTTCTTAAACTCTCATCCTTCTTGTTGTAGTTTACTCAGATATCTGCCATGGGAAACTGCCTCCTACAATATGTGTATACAACAGAAAAGCTAAAGTACAGTGGTAGAAAGGGCCTTGTATAGCTGCGGTGTGCTCAAATCTGACCGCTTACTTTCGGTTTACTTATGGAACTCAGCACCTATGAACAAACTATTGTTTTATCAACTGTTTCATGAACTGTAATGAATGTCTCCTTGGTTGACTGTActgtatgcaaaaatataaactgtaaatgtgGTAAATGTGtgctaattaaattaactttaattattaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014470 True 4382 mRNA 0.46 4 15221914 15242306
TU87887 False 2650 lncRNA 0.35 2 15239656 15242333

Neighbor

gene id symbol gene type direction distance location
AMCG00014468 NA coding upstream 42759 15164212 ~ 15179155 (+)
AMCG00014469 dmd,LOC106574979,LOC107692624,LOC107665951 coding upstream 84378 15089695 ~ 15137536 (+)
AMCG00014464 NA coding upstream 178459 15022999 ~ 15043455 (+)
AMCG00014467 NA coding upstream 232847 14920413 ~ 14989067 (+)
AMCG00014466 NA coding upstream 393793 14823792 ~ 14828121 (+)
AMCG00014471 NA coding downstream 5438 15247771 ~ 15253971 (+)
AMCG00014472 wdfy2,LOC106582235 coding downstream 31228 15273561 ~ 15287276 (+)
AMCG00014476 NA coding downstream 90596 15332929 ~ 15336221 (+)
AMCG00014480 med4 coding downstream 123363 15365696 ~ 15371378 (+)
AMCG00014486 NA coding downstream 237119 15479452 ~ 15485053 (+)
G70286 NA non-coding upstream 41094 15179845 ~ 15180820 (+)
G70271 NA non-coding upstream 754170 14466704 ~ 14467744 (+)
G70221 NA non-coding upstream 1050902 14167446 ~ 14171012 (+)
G70054 NA non-coding upstream 1525043 13694815 ~ 13696871 (+)
G69961 NA non-coding upstream 1841510 13352333 ~ 13380404 (+)
G70378 itm2b,LOC108430053 non-coding downstream 108309 15350642 ~ 15430852 (+)
G70409 NA non-coding downstream 208445 15450778 ~ 15451268 (+)
G70413 NA non-coding downstream 258225 15500558 ~ 15500832 (+)
G70415 NA non-coding downstream 263481 15505814 ~ 15506048 (+)
G70418 NA non-coding downstream 280192 15522525 ~ 15525015 (+)
AMCG00014461 NA other upstream 865046 14302447 ~ 14356868 (+)
AMCG00014456 NA other upstream 1016900 14189564 ~ 14205014 (+)
AMCG00014423 pou2f1b,LOC107748141 other upstream 1532726 13655238 ~ 13689188 (+)
AMCG00014407 LOC107725344 other upstream 1970182 13246309 ~ 13251732 (+)
AMCG00014345 NA other upstream 5070001 10147979 ~ 10151913 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other downstream 433298 15675631 ~ 15685899 (+)
AMCG00014508 NA other downstream 887146 16129479 ~ 16139032 (+)
AMCG00014525 NA other downstream 1223288 16465621 ~ 16469209 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other downstream 2122465 17364798 ~ 17487050 (+)
G71004 NA other downstream 3029521 18271854 ~ 18274360 (+)

Expression


Co-expression Network