AMCG00014480 (med4)


Basic Information

Item Value
gene id AMCG00014480
gene name med4
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15365696 ~ 15371378 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014480
AAACACGGTTCTATCATGGCGGTTTCCGACAAATCCACTAAAGAACGATTACTGTCTGTTTTAGACGATTTGGAAGTATTATCTAGGGAGCTGATCGAGATGCTGGCATTGTCGAGGTGCCAGAAACTGCCCCAGTCTGGGGAAGAGACACAGATTTTGGAGCTGCTGGTGCAGAGGGACAGTGAGTTTCAAGAGCTGATGAAAGTGGCCCAGGAACAGGGCAAAGTGCATGAGGAGATGCAGCTCTTGGAGAAGGAAGTGGAGAAGAGAGACAGTGACATCCAGCAGCTGCAGAAACAGCTGAAGGAGGCAGAGCACACACTGGCAACTGCTGTGTAccaagcaaaagaaaaactgaaatccaTAGAAAAAGCGAGAAAAGGGAGCATCTCTTCtgaagaaattataaaatatgctCACAGGATCAGCGCCAGCAACGCCGTGTGTGCTCCTCTAAACTGGGTACCAGGTGATCCCCGGAGACCCTACCCCACGGATCTGGAGATGAGGAGTGGGATGCTGGGACAGATGAGCAACCTGCCTACCAATGGTGTAAATGGACACCTCCCAGGGGATGCACTGGCAGCTGGAAGACTGCCTGATGTGCTGACGCCGCAGTACCCCTGGCAGTCCAGCGACATGTCTGTTGGCatgctgcccccccaccacagcAATGAGTTAATGCTGGAGCCACCTGGGCATAACAAGGAGAACGAGGATGATGTGGAGGTGATGTCGACTGactcctccagcagcagcagtgattcGGACTAGAGGACGAGACGAGGACTGTTtacgacactctctctctctctctctcacacacacagcaggctgTGTGAAAACCACCACTCTCTCGCAGGCTCAAGAGTGGGAGCTACATGTatgtgaaaatacacacactattGGTTGTAATCTGGACTGTGTCCTATCTACAGATTAAATGACTGGGACAGGATTATAAAGCAGAACAGTTTCATGTTGTAAAACTCAAGAACATGTTTTGCTCAACAATGCACCTGAAAGAGCTGTTCCACAGTACAGATGCACAACATTGTAGACAACTGGCCAGACCATTAGTAGTAATTGTTAATGTTTCACAACTCTGTTACTCGGATGTGAATGAAAATCTGCAGAACACATTGTACTTTCTCTTCAGTAAATCAGTGGGAGACCATCATGTTCCCTCTGGCTGTATTAAGGTTTCACAATATACTCAGGTGAGGAAGGCAGGGAATAGGAGTATGGCAAGGAAACACCTCCTATTTTAAAAGTAGCTACATTGGTATAAAACCCATTGTAAGCTTTTTTTGATTGTGCTGCTGTCAAATGTTTTTATggcatgtttgtatttctttcctaATAACAACAACTTAAGTTAATGTTGATAAGAAAACTAGGATCAAAGGAATAAAGAACCCACTTGAAAACCATGAATATTAGAGATAAACACAAGGATGCCCTgttttatttggatttatttaaacCAAAGAACATTCACAGTGTGTTGTAAGTTTTgcataagattttttttttttttaaacaaggcaTTGTAACTGCAGAATTGTAAATAGTACTGTAcataatttcaaatgttttcctattttgtaaataaaagacaaatccTGAGTTAACTGTATGACACTAGTGGTGTAAAAACAAAGGGTAAAACCTTTTCTCAATGAACCAACACTTTGCTAAAAGTATAGACATCCAATTGAAAATTATGCATCTTCCCATGATTCGAATAAGAATCTTTTTAATCTGTACACAATTTCCTTTACTTCTGAAATCACTTAATGGAAACCACTTTTCCCCAGAACCTTCATGCTATACAAACAGTCGCAGTTGAGTGATTCTTGTGTCCATCTTCAGCTGAATATGGGTAAATGTTTCACTTGTGCTTTCATATGCAGGGTTATGCCTGGAGGCATAAACCAAACACCAGTGGGCATTAGcatctgtatttgaaaaatcaactcttataaatacaaatgtttgtgtCCTAGCCATCAGATGTACATAtacaaaacagaatgaaaaagtgtttttatgcaCCAAGTCTCCTTTCTTCTAATTACACGTGTGTACCAATCAGCAGTGCACTATTCCTGCCGCCTATAAAATCACTTGAACTACTGGTCAGTTATGGGTTTCGACTCTTTGATGCGGTCTGCTGTGGAGAGTGTGCACGGTCTCTGAAAGGGTGGTAGCCCTGTTGTCGCAGGCAGGCCAGAGGCAGGAACAGCTGACTATCTGATGGAAAATCTTCCCACCTAGTCCAGGTCCACCCTGCaTTTTCTCGGGTTCTAAATTGACAGCTTCTGAAGGGTGGCTCCGGTCCACCTCTCCTTGCATTATGATGGTGACATAGTGGTAGTTTTCCTCCAGCCTGATCGAGTTCACCACTGATGCAAAGTGAACATTCATCAGGTGAAGCCCTGCTTCCTCCAGCACTTCTCTGGCAGCGCATTCTTCCCATGTTtccctaaaTTCCAGATGACCCCCGGGTAACTGATAAGTACCTTTACCAACGAGGCTTTTCCTCCTTCCCAAAAGGACACAACCTGAATTCTCGCTGTCTGTGACCAGGACGCCCACTCCTACCCCCGGCCGCTTGCAAAGACCATTCCCAGCATCTGTCATTTTAACTCATCTCATATCACACTCGATTAGCAgtaactaaaataacattgtgtaGACTAAGACTAGGGTTAATCTGGGTCTGTAAAACCAGTAAAGCATCACACATCAATACCGGTTTTAAAGCTATTCGAGAATAGGATTTATGTTCAGATGACCCAGGTTTGAGAGGATCGGGAAGCAGTAGAGTTATTGCGGACTGCGCAGTCGC

Function

symbol description
med4 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of core mediator complex. Orthologous to human MED4 (mediator complex subunit 4).

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 4 isoform X1

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15146 MED4; mediator of RNA polymerase II transcription subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014480 True 2854 mRNA 0.44 9 15365696 15371378

Neighbor

gene id symbol gene type direction distance location
AMCG00014476 NA coding upstream 29475 15332929 ~ 15336221 (+)
AMCG00014472 wdfy2,LOC106582235 coding upstream 78420 15273561 ~ 15287276 (+)
AMCG00014471 NA coding upstream 111725 15247771 ~ 15253971 (+)
AMCG00014468 NA coding upstream 186541 15164212 ~ 15179155 (+)
AMCG00014469 dmd,LOC106574979,LOC107692624,LOC107665951 coding upstream 228160 15089695 ~ 15137536 (+)
AMCG00014486 NA coding downstream 108074 15479452 ~ 15485053 (+)
AMCG00014481 NA coding downstream 123847 15495225 ~ 15499833 (+)
AMCG00014482 NA coding downstream 146493 15517871 ~ 15522481 (+)
AMCG00014488 NA coding downstream 228781 15600159 ~ 15617165 (+)
AMCG00014489 lcp1,LOC106582249 coding downstream 258812 15630190 ~ 15654845 (+)
G70286 NA non-coding upstream 184876 15179845 ~ 15180820 (+)
G70271 NA non-coding upstream 897952 14466704 ~ 14467744 (+)
G70221 NA non-coding upstream 1194684 14167446 ~ 14171012 (+)
G70054 NA non-coding upstream 1668825 13694815 ~ 13696871 (+)
G69961 NA non-coding upstream 1985292 13352333 ~ 13380404 (+)
G70409 NA non-coding downstream 79400 15450778 ~ 15451268 (+)
G70413 NA non-coding downstream 129180 15500558 ~ 15500832 (+)
G70415 NA non-coding downstream 134436 15505814 ~ 15506048 (+)
G70418 NA non-coding downstream 151147 15522525 ~ 15525015 (+)
G70496 NA non-coding downstream 356056 15727434 ~ 15728917 (+)
AMCG00014470 NA other upstream 123363 15221914 ~ 15242333 (+)
AMCG00014461 NA other upstream 1008828 14302447 ~ 14356868 (+)
AMCG00014456 NA other upstream 1160682 14189564 ~ 14205014 (+)
AMCG00014423 pou2f1b,LOC107748141 other upstream 1676508 13655238 ~ 13689188 (+)
AMCG00014407 LOC107725344 other upstream 2113964 13246309 ~ 13251732 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other downstream 304253 15675631 ~ 15685899 (+)
AMCG00014508 NA other downstream 758101 16129479 ~ 16139032 (+)
AMCG00014525 NA other downstream 1094243 16465621 ~ 16469209 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other downstream 1993420 17364798 ~ 17487050 (+)
G71004 NA other downstream 2900476 18271854 ~ 18274360 (+)

Expression


Co-expression Network