AMCG00014491


Basic Information

Item Value
gene id AMCG00014491
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15619162 ~ 15627108 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014491
ATGAGCACAGAGCGCACTGCACTGCGCGCCGTTGCCAGGGTCGTCTCCCCGGACACCAGGATCCTGCCGGACAACAAGAGCCGCGTCGCCTTTACCACCCAAGACCCTGCCAGCACTCCGGCCTTCAGTTCCGCTTCCCCCCGCTACGTCCCTGGACCTCCTCGGACCTGGCAAAGGGTGCATCTCCTGGGGGTGCTACAGGAAGACCCTCATTTCTATTCTCTGCCAGAGTTTACCTTGAATGATTTCTTGGAGGATCCCTCTTCCTGCCCAAGGCTTTACAGGGAACGTCTGAAGCAGCTTGTTCTTTCCCGCCACAACTACAAAAAACTGATAGAGCTCTTTTTAGCTGAGCTCCACAGAGGGAGGCAATCGGAAATCTCTACCCATGTGCTGTCCAGTGAGTCGGTGCCAGTGGCTACATCGAGGAAACCCCAGAAACAGATCATTTATGGATCAGAAATCCTTCTGAACTCTGTTACCACGCGGTATTTTCAGGGCTTTCGCTGCAGCCAGTCTCCCTTTCTGCAAGACAAGCAACATGGCGGTATATCCCCCTCAGAGCTGGCGATATTGGACTGCCTGGTGCAAGGAGGGCTTCTGCTGAGTCTGAAGGCCCATTTCATAGCTCGAGTTCCTGACCTGACACCATTGGCACAAACGTTGCTGTATTTAAACCTGTCCTTTAATGATCTGAGCATCTTTCCTGCTGAGGTATATGACTTACCTTACTTAGAGGTATTAAAACTAAGGGACAATCCCATTAAAGAGATCCCAACTGGCATACACAAACTCTCCCGACTGAAGACCTTTGTGATGTCGTTCTGCCTGGTGTCCTGTCTTCCTCTTGGGTTGTTCCTTTTACCATGCCTGCAGTTTCTGGACATCTCCTACAATTTGATTTCTTCTGTCCCCAATGACATAAAGAATCTGAGttcaattcaccTTTTCAACTGCAGGGCCCTTGAGTATCTGAACGTGGAGGGGAATCAACTGGCCGCCCTACCCTGTGGGGCCCTGAGGCTCACCTTGAAGCAGCTGAGAGTCACCAATAACTACATGCACCCGTACTTCTGGGCAGAGAGCACTCAGAACCAGCCCCAGAGGCTCAGCCACCTGGCAGCCCTCACTCTCTTCACCAGCCACCGGCGCCACAGCAGCCTGCCCAGTGACATTCAGCAAGACTTAAATAATGTGCGAGTTTGTGACTGCTGCCAAGGACCCATGTCTGGTCCTGGACTAAAGCTGATCAGGCCCTGTGAGAAGATATTTGGAGTCCGAAAACTGCCCTTCCTCTTCTCTGCCTGCTCTCCATCCTGCTACAAGAAGTTCAGCACTCAGACCACTAACCTCGTCCAGGTCCTCTACGGAGAGTCCTCTTCATAGCAGAGAAAAAAAGCAGGGGGAAAAATGCCTTCATACCAGATACGAGCCCTTTCGCTGTATGTGGTAATGTGTTGtttgaatgaaaagaaaattgtgGCAAATGCGTATATTTGTTGATGAAATAGTGTCAGTTTTATAGCACACAAGCTTCAGAGGGATCATCCATCATTTCATTGTGTCgtccaagaaataaaaaaaaatcatgtttttataaataaattgtttagATAAGATCATAATTAGGAAGTCATACTAGACGAGACAgttcttcttctctttttaaACAGAAGTGTGCAAAGTATTTGTATACAAAAGTCTGTTTTCTACGTTTATGGCAATAATATGTATTGGGTTTATGGGATACGTCTCTTTGAGAACTCCCAGCAGCCCCAGGCGGTTGTGTGTGAAAGGCAGTTATTACAGATAGTTGCTGCTGGGTTCTGACAGTGGGTTTACCTTGAGGGTTTATTTTCTTAAGCCTCATTAAAACACTGCGGGAAGTTTAACATTTGCTTTAGAGATTTCAGAAGTTTTAACTTAAGAGAAATCTGTACTTCCTTTGACTTTCCTCAGAACAGCATGTCATTTCCGCTCATGTAGGCACAACACTGTTTAGTATAACTTTTTTGCAGGTATTTTTTAGGtcgtttgttttttgttttccccaatcTTCTTTAATTTGGAACTATACATTACatagttttttccccattaCACCCTAACCATATACAATTTCCGCCAACCTGAATTACAtcagtattattaatacttcTACAATTGTGTAATCTAATGTTTTCACTAGTGGGTGACAATTGTAAGTTTTCAATGCATGTGCATAAATTACAAATTCACACTGTTGTTTTTGGAGTCTTTTTATGATCACAACAGCAGCAAATGTGTGAATTCAGAAATCTGTAGGGttgcaaaaataattaacaatctTTTGTAATTATGACTGAAGATGTGGTTCTAAGTAGAATAAAAGCTGGCAGATGTCAGACTGAACAGAGAGCAGCCAGCTGAGCCCTGCAAGAGTCGAG

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014491 True 2426 mRNA 0.45 9 15619162 15627108

Neighbor

gene id symbol gene type direction distance location
AMCG00014493 NA coding downstream 23589 15590989 ~ 15595573 (-)
AMCG00014492 NA coding downstream 55161 15526728 ~ 15564001 (-)
AMCG00014485 nudt15 coding downstream 248037 15370180 ~ 15371125 (-)
AMCG00014484 NA coding downstream 256232 15350804 ~ 15362930 (-)
AMCG00014483 NA coding downstream 270689 15336207 ~ 15348473 (-)
AMCG00014499 cnot11,LOC106582250 coding upstream 45918 15673026 ~ 15676127 (-)
AMCG00014498 NA coding upstream 52687 15679795 ~ 15697711 (-)
AMCG00014497 NA coding upstream 122226 15749334 ~ 15751165 (-)
AMCG00014511 rdx,LOC108434698,LOC107757412,LOC107588847,LOC108258936 coding upstream 346245 15973353 ~ 15993156 (-)
AMCG00014510 NA coding upstream 414125 16041233 ~ 16067562 (-)
G70420 NA non-coding downstream 94148 15522520 ~ 15525014 (-)
G70425 NA non-coding downstream 112651 15506304 ~ 15506511 (-)
G70407 NA non-coding downstream 232462 15383633 ~ 15386700 (-)
G70402 sucla2,LOC107705569,LOC107584790 non-coding downstream 242388 15374238 ~ 15376774 (-)
G70346 NA non-coding downstream 376829 15238803 ~ 15242333 (-)
G70458 NA non-coding upstream 16511 15643619 ~ 15644914 (-)
G70491 pdcl3,LOC106586481,LOC102788355,LOC106582251 non-coding upstream 73100 15700208 ~ 15703314 (-)
G70660 NA non-coding upstream 585436 16212544 ~ 16214127 (-)
G70679 NA non-coding upstream 654577 16281685 ~ 16281899 (-)
G70689 NA non-coding upstream 739016 16366124 ~ 16369464 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 2485411 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 3951625 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 4482076 11125029 ~ 11137086 (-)
G69537 NA other downstream 4821015 10796716 ~ 10798147 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 5557932 10058097 ~ 10061230 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 1094965 16722073 ~ 16737877 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 1819760 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 1962159 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 2363543 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 3574695 19201803 ~ 19203567 (-)

Expression


Co-expression Network