AMCG00014500 (LOC101071565)


Basic Information

Item Value
gene id AMCG00014500
gene name LOC101071565
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15823276 ~ 15870879 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014500
GGGCGACATGTCAAAACTGGTCAATTGGCAGCCATCAAGGTTATGGATGTCACGGAGGATGAAGAGGAAGAAATTAAACTAGAGATTAACATGCTAAAGAAGTACTCTCATCACCGAAACATTGCCACTTACTATGGAGCCTTCATAAAGAAAAGCCCTCCAGGGCATGATGACCAGCTGTGGCTTGTGATGGAGTTCTGTGGGGCCGGATCCATCACAGACCTGGTGAAAAACACCAAGGGCAACACTTTGAAGGAGGACTGGATTGCCTACATCTCCAGAGAGATACTGAGAGGACTGGCCCATCTTCATGCCCACCATGTGATTCATCGTGACATCAAAGGGCAGAATGTTTTGCTGACCGAAAACGCAGAAGTGAAGCTGGTGGACTTTGGAGTGAGTGCCCAGCTGGACAGGACGGTGGGCAGGAGGAACACCTTCATTGGGACTCCATACTGGATGGCTCCTGAAGTCATTGCCTGCGACGAAAATCCAGATGCCACCTACGACTACAGAAGTGACTTATGGTCTTGCGGGATCACAGCCATCGAGATGGCAGAGGGAGCTCCTCCACTTTGTGACATGCATCCGATGAGAGCACTTTTCCTTATTCCCAGAAACCCCCCACCAAGGCTGAAATCCAAGAAATGGTCCAAAAAGTTCTTCAGCTTTATTGAGGGCTGCCTTGTGAAGAACTACATGCAGCGCCCCCCCACGGAGCAGCTGCTCAAACACCCCTTCATCAGAGACCAGCCCAATGAGAGGCAGGTTCGCATCCAGCTCAAGGACCACATCGACCGCACCCGCAAGAAGAGGGGCGAGAAAGATGAGACAGAGTACGAGTACAGCGGcagtgaagaggaggaggaagagactCCCGAACAGGAAGGAGAACCAAGCTCCATCGTGAATGTGCCCGGCGAGTCCACGCTGCGCAGGGATTTCCTGCGCCTGCAGCAGGAGAACAAGGAGCGGTCGGAGGCCCTGCGCAGacagcagctcctgcaggagCAGCAGCTGCGGGAGCAAGAGGAGTACAAGCGCCAGCTGCTGGCTGAGAGGCAGAAGCGCATAGAGCAGCAGAAAGAGCAGAGGCGGCGGCTGGAGGAGCAACAACGCCGAGAGCGTGAGGTGCGGCGGcagcaggagagggagcagaggCGGCGGGAGCAGGAGGAGAAAAGAAGGATGGAGGAGATGGAGCGCAGGCgcaaagaggaggaggagcgccGGAGAGctgaggaggagaagaggagggcTGAGCGAGAGCAGGAGTACATCAGGCgacagctggaggaggagcagagACACCTGGAGATTCTTCAGCAGCAGCTACTTCATGAACAGGCCATGCTACTGGAGTACAAATGGCGGGAGATGGAAGAGCAGCGTCAGGCAGAGAGACTTCAGCGTCAGTTGCAGCAGGAGCAGGCCTATCTCCTTTCGCTGCAACACGACcataagcagcagcagcagcagcagcagcagcagcaagacaGGAATAAACCACAGCCACAGCAGCAAGCTTACCAGCCCGCAGAGCAGAAACCCCCACCTCACGAGCCgacagacagagcgagagagGCTGACGAAAGGTTTCGAAAGAATATTCAGGGCTCGCCTCAAGCACAATCCAGGCAGCCTAGCAAAGTGTTGGAACCCCCAGTGCCTTCGCGCTCCGAGTCCTTCTCTAATGGCAACTCTGAGCCTGCCCCATCCGCAATGCACAGGCCTATGGAACCACAGGTACAGTGGTCCCATCTGGCATCTCTCAAGAGTAACGCTTCCCCCGTGTCTCGATCCCATTCCTTCAGTGACCCTTCTCCTATTTTTGCACATCTTCATCTTCGCTCTCAGGATCCATACCCACCATCACGCAATGACTTGCAGCCAATCTCTGAGCCTAGAGCAGACATGCCTGAGTCTGGCCCAAAGGATAAATACCCAGGGCCCTGGGCTAGAGCAGACAGTGAGGAGGTCCCACCCAGGGTTCCTGTGAGGACAACGTCCAGGTCTCCAGTGCTGTCTCGCCGGGACTCCCCTCTTCAGGGCAGCGCACAGCCCAGTGGCCCGGCAGGGCAAAGGAACTCCACCAGCAATGTGGAGCCCCGGCTGCTATGGGAGCGCGTGGAGAAACTGGTTCCCCGGCCCGGCAGTGGCAGCTCCTCCGGCTCCAGCAACTCCAGCTCCCAGCCCGGATCCCAGAGCGGCTCCGGAGAGAGGTTCCGAGTCCGATcaTCTTCAAAATCAGAGGGATCTCCATCGCAGCGTccagaaaatgctgtaaaaaaacCAGAGGAGAAGAAGGATGTATTCAGACCAAGCAGGCCAGCGGACCTCACTGCCCTGGCAAAGGAGCTGCGAGCCGTGGAAGATGTTCGGCCCCCCCACAAAGTGACGGACTATTCCTCCTCCAGCGATGAGTCGGGAACCACTGACGAGGAGGATGAAGAGCTCGACCAGGAGGGAGCGGACGAGTCCACTTCTGGCCCTGAAGACTCCAGGGCTGTATCTTCTAAAGTGAGCAATGGGGAAACAGAGTCTGTGAAGACAATGATCGTTCACGATGAAGTCGAGAGCGATCCTGCAGTCACTCCCTCCAAAGATGGCACTTTAATTGTAAGACAGAGCGCAGGTGACAAAAAGCGTCCCAGTCATCAGGAGAGCAATGGCTTTGCCGGTCGCATTCACCTCTTGCCAGATCTCATACAGCAAAgccattcctcctcctccacctcctccccaTCCTCCAGCCAGCTGACTCCCTCCATGTCCCCCCAGACTCCCCTGGACAAGCTCACTGCTAACGAGACCCAGTCTGCTAGTAACACTCTGCAGAAACACaaatcctcctcttccttcacGCCCTTCATCGATCCCCGCCTGCTGCAGATCTCCCCGTCCAGCGGGACGACTGTGACGTCTGTGGTGGGATTTGGCAATGAAGCCATGAGGCCAGATGCCCTTAGACAGGACCCTACCAGGAAGGGCTCTGTGGTGAACGTGAACCCAACCAACACACGACCCCAGATAGGTACTGAGAGTGGCCTAATGCTGCTGGACAGGAGTGGACAGGGGAAGGTATATCCTCTGATTGGTCGTAGACGTTTTCAACAGATGGACGTGCTTGAAGGCCTTAATGTCCTGGTGACAATATCAGGCAAGAAGAACAAGCTGAGAGTTTACTACTTGTCCTGGCTAAGGAATAAGATCTTGCATAATGACCCAGAAGTGGAGAAGAAGCAAGGGTGGACAACCGTGGGCGACCTGGAAGGCTGTGTGCACTATAAAGTTGTAAAATATGAGCGCATCAAGTTCTTAGTAATTGCATTGAAGAATTCTGTGGAAGTCTATGCATGGGCACCCAAGCCATACCACAAGTTCATGGCCTTTAAGTCATTTGGAGATTTGGTGCACAAGCCGTTGTTGGTGGACCTGACAGTTGAAGAAGGCCAGAGGCTGAAGGTGATCTATGGCTCCTTTTCTGGATTCCATGCTGTGGATGTGGACTCAGGGACGGTTTATGACATCTATCTACCGACGCATATCCAGAGCAGCATTCAACCGCACGCCATCATCATCCTGCCCAACACCGATGGCATTGAGCTGCTGGTGTGCTATGAGGATGAAGGAGTCTACGTCAACACCTATGGCAGGATCACCAAAGATGTGGTTCTGCAGTGGGGAGAGATGCCCACTTCAGTCGCCTACATCAGATCAAACCAGATCATGGGCTGGGGGGAGAAAGCGATAGAGATCCGCTCGGTGGAGACTGGCCACCTGGATGGAGTGTTCATGCACAAAAGGGCCCAGAGATTAAAGTTCCTGTGTGAAAGAAATGACAAGGTATTCTTTGCCTCTGTCCGTTCTGGTGGCTCCAGTCAGGTCTACTTCATGACCCTGGGAAGAAGCTCCCTTCTGAGCTGGTAGGAGAAAAGCCAGGGAACCCAATGGACAACTGTTTTTCACAAgatatgaaacacaaaaaaacctTGAACTAATCTACAACTGGAGAACAAGCTGCACTGAGGCCATATTCTATCTAAAGGCTGTCACCTGGTGAAAATAGATTTTAGAAATTACAAAACCATAGAAAAGGAATGGCTGCAAAGCCCCTGGTGCTGTTAAGATTATGGCTGTCAGGTGCCAGTCGCACGGTGGCTTTGACATGCTGTCAGACAGTAACACCTCAACTGTTTCAGACTTCCTGGGCTTCAGATGACTTTGCTTGTTGACAATTTTACAGAGCCCTAACATGAATAATATAGCAAAGCTAAACTTTGGATAAGCAAGTGAGAACGAGAAGGGATGGCTGCATTGGCATCACAGAGGGTTAGTCTAAAAGTATTAATACtatagtgtatttaaatgtctttctttttgatAGTGACAGCTGAAAATGGGAGGAGGGGGCaggatttagtgtttttaatgtcagGATGGAAAGAGATGGGGACTGAGTTGTGTTCTGTGAATTGGTTGCACCTGAAAGCAAAGGACCAGAGATGTTGATTTCTTAAATTGTTGGGATTAGGGTTATGTTGCAGGTTAAAATCTACTTCAGaataacatttgtgttttttttgtttgttttctgcatagaagtgcaaaggtttatttttttgttttttgtcctccTAAGTTTGCACTTAGATccctttttaagttttgtttagtttttttaacctACCTCATTGTTGAAATGCAAGAGCTACAGGAGGTGGTTTAATGCTTTCTAAAGAATTGAAATACAGCAACAAAGTCTCTTGTTTTGATTCTTTGTCAAACCAAATTGACAGCAAACTTGTTTGGGAGGGGGGAATAATGGACTGATATCATGCCAGCAGACCATTGAATAAATGACCTGAAGGCAGTAATGGCAGAAACAGCGAAGATACTGGTTTTGAATAATGGAGAAGCATGAAACATCAGAAATGTTATACATGGTTTTAAGGTTAACTAATACAGAGGTGACTGCTTAATTCAGCTAGAAATCAGATGTTTGTAGCAGGTGGTAACTTTGCTAGGATTCTTAACTGTATGTAGTAGGaaaccagtgttttttttgttttttcccttttctttgttttctgaatgCAATGcactaaatatatttcaagaatGTAGAAAATACTGCTTAATGGTAAATGGCATAATCTGTACTTACAATGATGCGAGatcccagtccagtccagaagtttttttgtttttttttgtttgttttttttaagacaaaatgGAGAAGAGCTGGAATGATTTTGTtggacagaaaaaataaataaatcttgaaATTTACAGTAGTGTATCAGCAGTTCTATGTTGTTTAAACTGTCTTTTCATTACTTGAGAGACTTAAAGTGTATAATACGTTGGTGATGTAATCAAACACCGTGGTATTGCATTATCCTACCGTAGGCTCCTTTTGGGTACCGTGTTGACAGCTGCCTTAAAGCTGTTCATTCATCGAACAGAATCTGTTTCTTATAGGGCTTAGACTTCTGCAATCTCGATATGAAACAGCATGACTTGTAGGGCATTTTTGAAGTTGTATACTTGGTTAACTTTTAAATGGCAGGTCATATGAATAaccattttataaattaactgGTTTCCCAAATCATGAAGCAAAATGCATCTAAGTGTGTGAAGGCTGTTACAGCACAGCAAGCAGTTTGCATGTGAAGGCATAAAGTAAACCAATGTGGACAACCCATCTTCGGGTCACTCTTTTACCccgttttatttgtttaagcaCTGAAGGCAGttcccccctcctcctgccACAGGaggatttcttcttcttcaaaatgCTCTATTTCAAGGAGCCAAGATGTTTGTAATATTAGAGAAAAGTTATGTGATCATCAAAGACCTAAAcgcatttctctttttttttttctctggggAAGTtggttcattttcatttttaatgtccTCAAGGCACTGCACTTGTACTCGCAAAGTATTTGATCCAATTTCTTGTATGTGaaatttcaaagaaaacaaatgtgtatgagGTCTTTACGGTAATTAGTCCCTCAAATACTGTCTCTCATTTGACTATCTCATTCTTGTTGCTAAATACAGTACGGCCTTTCAGACATAAGTGACTTTACCATTAGCAGAAATctgttgacattttaaagtagaaaacattttctctcgGCAGTCTGTGACTAGCAGCTCCCACTGTAAGAGGTGTGCCAAGGTGGCGATTTTACAAGTAACAGTATTACAAAACCACTACATGAAAATCATTTTGAAGAACTCTTTGAGcatcatatatttttaacttctaGATTTAGTTGAGAAGCTTAATGAtagttgattttatttctgtaacttGCGTAACCCTAATTATAcgactgcagtgtttttaatattatgcaCACGTTATGTTGAGAAAATGTTTAcagaaacaatgttttgttaCACTAATGTGCATCatatatttatggtttatttgaaagcatttttgtgtttttttgttttttttagcttgttttgtattataagtacacttttttttatatatatatatccataacCCTaaattctgctgtttttttttttttttaagatacaaaagtaatacaaatgacaaattGTGAATTAATTACTAGTTATCTAGCTGCAAAGCAGACCGGTTACaggttaaaatgttttcatccaTCGTTTCTGCCATGCTAACTTATGTCCTCTGTGTATTATGGGAATTCCTGTATTTTCCTGAAGgtcatttttttcttgaataaACTCGAAGTAATATaccctgtgttttgtttttgcttgtctGGTGTTTGTCTCAAACTGAAGGAAACGCTTGCATTTAACAGGAAGGATGTGGGAATGGGTAACACTAATATCTGTGCAGTTATGAAGTTCTTCAGATTTgtcaagattttaaaaagcagccaGAACAGGTATTACATTTGAGTTCAGATTCATACAAGTGATGGTTCTTGAGCTTGATGTAATTTTCTCCATTAAATTTACTTTtggaaaaaaggaagaatgCACTCAAAAAAGGAAGTGATGCGTATATTGATGTTGCAAATCCCTAGCATGTTCGCTGTTATATAACGTAAGGGAACCGCGCTCCCTCCcctctttttttcattttattttccttccgaCCACTGTGTAAATATAAACTGGGTGCACACTGACGTAAATGACGCTGTCAATTAAGTGTTGGGGGTTCCCTGGAATTTTGTTATCGGCAGGATTTaatgttatgtttgtgtgtgttcctatgtgtgttcatgttttaGTATTATAGAAACTGCTgcgaaaaataaaatcataaccCG

Function

NR:

description
PREDICTED: TRAF2 and NCK-interacting protein kinase-like isoform X1

GO: NA

KEGG:

id description
K04407 MAP4K4, HGK; mitogen-activated protein kinase kinase kinase kinase 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014500 True 7313 mRNA 0.46 30 15823276 15870879

Neighbor

gene id symbol gene type direction distance location
AMCG00014501 NA coding upstream 41726 15780589 ~ 15781550 (+)
AMCG00014495 NA coding upstream 74158 15735645 ~ 15749118 (+)
AMCG00014494 NA coding upstream 97836 15715800 ~ 15725440 (+)
AMCG00014496 pdcl3,LOC106586481,LOC102788355 coding upstream 119817 15700154 ~ 15703459 (+)
AMCG00014487 zc3h13,LOC105022574,LOC106573267,LOC106510916 coding upstream 152128 15656929 ~ 15671148 (+)
AMCG00014503 NA coding downstream 3704 15874583 ~ 15877671 (+)
AMCG00014505 NA coding downstream 14384 15885263 ~ 15903047 (+)
AMCG00014504 NA coding downstream 36702 15907581 ~ 15916966 (+)
AMCG00014502 NA coding downstream 76701 15947580 ~ 15954701 (+)
AMCG00014506 fdx1 coding downstream 137520 16008399 ~ 16036760 (+)
G70496 NA non-coding upstream 94359 15727434 ~ 15728917 (+)
G70418 NA non-coding upstream 298261 15522525 ~ 15525015 (+)
G70415 NA non-coding upstream 317228 15505814 ~ 15506048 (+)
G70413 NA non-coding upstream 322444 15500558 ~ 15500832 (+)
G70409 NA non-coding upstream 372008 15450778 ~ 15451268 (+)
G70562 NA non-coding downstream 47534 15918413 ~ 15918621 (+)
G70637 NA non-coding downstream 366231 16237110 ~ 16240338 (+)
G70735 NA non-coding downstream 619532 16490411 ~ 16491118 (+)
G70776 NA non-coding downstream 859999 16730878 ~ 16733637 (+)
G70835 NA non-coding downstream 1158081 17028960 ~ 17097964 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 137377 15675631 ~ 15685899 (+)
AMCG00014470 NA other upstream 580943 15221914 ~ 15242333 (+)
AMCG00014461 NA other upstream 1466408 14302447 ~ 14356868 (+)
AMCG00014456 NA other upstream 1618262 14189564 ~ 14205014 (+)
AMCG00014423 pou2f1b,LOC107748141 other upstream 2134088 13655238 ~ 13689188 (+)
AMCG00014508 NA other downstream 258600 16129479 ~ 16139032 (+)
AMCG00014525 NA other downstream 594742 16465621 ~ 16469209 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other downstream 1493919 17364798 ~ 17487050 (+)
G71004 NA other downstream 2400975 18271854 ~ 18274360 (+)
G71525 NA other downstream 6984463 22855342 ~ 22855646 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000039_08214054_08244061 MINK1 coding CI01000039 null 8214037 ~ 8244061 (-)