AMCG00014511 (rdx,LOC108434698,LOC107757412,LOC107588847,LOC108258936)


Basic Information

Item Value
gene id AMCG00014511
gene name rdx,LOC108434698,LOC107757412,LOC107588847,LOC108258936
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15973353 ~ 15993156 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014511
GATCAATGTCCGGGTCACTACCATGGATGCAGAACTGGAGTTCGCCATCCAGCCCAACACAACTGGCAAGCAGCTCTTTGACCAGGTAGTGAAGACGGTGGGCCTCCGTGAAGTGTGGTTCTTTGGGCTGCAGTATGTGGACAGCAAGACATACAGCACCTGGCTGAAACTCAACAAGAAGGTGACACAGCAGGACGTGAAGAAGGAGAACCCCCTGCAGTTCAAGTTCCGGGCCAAGTTCTTCCCTGAGGACGTGTCAGAGGAGCTCATCCAGGAGATCACGCAGAGGCTGTTCTTCCTACAGGTGAAGGAGGCCATCTTGAATGATGAGAACTACTGCCCCCCCGAGACGGCTGTACTGCTGGCCTCCTATGCCGTGCAGGCCAAGTACGGGGACTTCAACAAGGAGGTGCACAAGCCTGGATACCTCACCAACGACCGGCTGCTCCCACAGAGgGTTTTGGAACAGCATAAACTAACCAAAGAGCAGTGGGAAGAGAGAATACAGACCTGGCACGAGGAGCACAGAGGAATGCTGAGGGAGGATTCGATGATGGAGTATCTGAAGATTGCGCAGGACCTGGAGATGTACGGAGTGAACTACTTTGAAATCAAGAACAAGAAGGGAACAGAGCTCTGGCTGGGGGTTGACGCGCTCGGGCTCAACATTTATGAACACGAGGACAAGTTGACGCCAAAAATTGGCTTTCCTTGGAGTGAAATCCGAAACATTTCTTTCAATGACAAGAAGTTTGTCATCAAACCCATTGACAAAAAGGCTCCAGACTTTGTGTTCTACGCCCCGCGATTACGGATAAACAAGCGTATCCTAGCCCTGTGCATGGGCAACCACGAGCTCTACATGAGGCGGAGGAAGCCTGACACCATTGAAGTGCAGCAGATGAAGGCCCAGGCCAGGGAAGAGAAGCACCAGAAACAGCTGGAGAGGGCACAGCTAGAAAATGAGAAGAAGAGAAGGGAGCtggcagagaaagagaaggaaagaatAGAGCGAGAGAAAGACGAGCTTATTGAGCGCCTCCGACAGATTGAAGAGCAAACGTTAAAGGCACAGAAAGAGCTGGAGGAACAGACCCGGCGGGCCCTGGAGCTGGACCAGGAGCGGAAACGGGCCAAGGAGGAGGCAGAGCGGCTGGAGAGGGAGCGCCATGCGGCAGAGGAGGCCAAGGCTGCCCTGGCCAAGCAGGCCGCAGACCAGATGAAAAATCAGGAGCAGCTGGCGGCTGAACTTGGTGAATTTACTGCCAAAATCGCACTACTGGAGGAGGCCAAGAGGAAAAAGGAGGAGGAAGCTTCAGAGTGGCAACACAAAGCGATATCGGCACAGGAAGACCTGGAGAAGACCAAGGAGGAGCTGAAGACGGTGATGAGCGCACCTCCGCCCCCGCCCTCGCCGCctcctcccccgccccccccagtGGTGGCACCGGTGGAGAACGAGCACGACGAGCAGGATGAGAACAGCGCGGAGGCCAGCGCCGAGCTCTCCAACGAGGGCGTCACCAACCACCGCAGCGAGGAGGAGCGTCTCACCGAAGCGCAGAAGAATGAGCGCGTCAAGAAGCAGCTGCAGGCTCTGAGCTCGGAGCTGGCGCAGGCCCGAGACGACACCAAGAAGACGCAGAACGATGTCCTTCACGCAGAGAACGTCAAAGCGGGCCGAGACAAATACAAAACCCTGCGGCAGATCCGACAAGGCAACACCAAGCAGCGCATTGACGAGTTTGAGTCCATGTGAGGGTGGGCAGAGGGGCGGTGGCGAGAGCCCCCTTtgccgattttttttttttttttttttttttggtttctgtgt

Function

symbol description
rdx Enables ATPase binding activity and actin binding activity. Involved in several processes, including negative regulation of GTPase activity; positive regulation of macromolecule metabolic process; and regulation of organelle organization. Located in apical plasma membrane. Colocalizes with focal adhesion. Implicated in autosomal recessive nonsyndromic deafness 24.

NR:

description
PREDICTED: radixin

GO: NA

KEGG:

id description
K05762 RDX; radixin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014511 True 1834 mRNA 0.55 12 15973353 15993156

Neighbor

gene id symbol gene type direction distance location
AMCG00014497 NA coding downstream 222188 15749334 ~ 15751165 (-)
AMCG00014498 NA coding downstream 275642 15679795 ~ 15697711 (-)
AMCG00014499 cnot11,LOC106582250 coding downstream 297226 15673026 ~ 15676127 (-)
AMCG00014491 NA coding downstream 346245 15619162 ~ 15627108 (-)
AMCG00014493 NA coding downstream 377780 15590989 ~ 15595573 (-)
AMCG00014510 NA coding upstream 48077 16041233 ~ 16067562 (-)
AMCG00014509 NA coding upstream 162102 16155258 ~ 16164120 (-)
AMCG00014515 pspc1,LOC108258933 coding upstream 238409 16231565 ~ 16250776 (-)
AMCG00014521 LOC106575534,LOC106575594 coding upstream 307477 16300633 ~ 16307473 (-)
AMCG00014520 NA coding upstream 315132 16308288 ~ 16308806 (-)
G70491 pdcl3,LOC106586481,LOC102788355,LOC106582251 non-coding downstream 270039 15700208 ~ 15703314 (-)
G70458 NA non-coding downstream 328439 15643619 ~ 15644914 (-)
G70420 NA non-coding downstream 448339 15522520 ~ 15525014 (-)
G70425 NA non-coding downstream 466842 15506304 ~ 15506511 (-)
G70407 NA non-coding downstream 586653 15383633 ~ 15386700 (-)
G70660 NA non-coding upstream 219388 16212544 ~ 16214127 (-)
G70679 NA non-coding upstream 288529 16281685 ~ 16281899 (-)
G70689 NA non-coding upstream 372968 16366124 ~ 16369464 (-)
G70731 NA non-coding upstream 472623 16465779 ~ 16469228 (-)
G70876 NA non-coding upstream 1291163 17284319 ~ 17284576 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 2839602 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 4305816 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 4836267 11125029 ~ 11137086 (-)
G69537 NA other downstream 5175206 10796716 ~ 10798147 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 5912123 10058097 ~ 10061230 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 728917 16722073 ~ 16737877 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 1453712 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 1596111 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 1997495 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 3208647 19201803 ~ 19203567 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011694 ezra coding NC_007128.7 CM002901.2 45413324 ~ 45452116 (+)