AMCG00014516 (ift88)


Basic Information

Item Value
gene id AMCG00014516
gene name ift88
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16346034 ~ 16370627 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014516
ATGACCAAGGGGAAAGAGGGAAGGGCCAGCATGATGGAGCATGTCCACCTAGCggcggcggaggaggaggaggatttGTATTCTGGATACAACGACTACAATCCAACGTTTGACACTGAAGATCTGGAAAATGACACCGGGTTTCAACAGGCAGTTAAGACCAGTCATGGCAGAAGACCACCTATGACAGCTAAAATTCCTGGCACTGCTCTAGGTGCACGGCCCATGGGGACAACATTTGGAGCAAGGGTGCCTTTGGCCTCATCTCTGGGCAGACCAATGACAGGTGCTGTACAGGATGGAGTTTCGCGACCAATGACTGCAGTGAGAGCGGCTGGATATTCCTCCGCAATGACCAGAGGTTCTACATTTGATCCACTGGGTCAGTCCAAAGGACCTGCACCCCCTTTAGAAACCAAAAATGAAGACACTCCTGAAGAAAAGATCAAGAGCCTGGAAAAGCGAGTGAATGACTTGATTGAAGAAAGCTGCATGGCTCACAGCCACGGGGATCTTCAGCTGTCTCTAGAAAAGGCTAAAGAAGCTGGGAGAAAAGAGAGAGCGCTGGTGAGACAGCGGGAGCAGACTGGATCATCAGAACACGTCAATCTGGACATGACGTATTCCgttttatttaatttagcaaaCCAATATTCAAATAACGACATGTATCCAGAAGCTCTGAATACATACCAAGTGATTGtgaagaacaaaatgttcaataaTGCAGGGAGGTTAAAAGTGAACATGGCTAATATATTCTTCAAACAGAAGAATTACCACAAGGCAATCAAATTTTACCGTATGGCTTTAGACCAGATTTCTAATTCCCACAAGGAAATGCGtattaaaataatgcaaaatattggAGTGGTTTTCATAAAAATGGGCCAGTACTCCGATGCCATCACCTCATTCGAGCACATTATGACGGAAAGTCCAAATATAAAGACTGGCTTTAACCTGATCCTCTGCTACTATGCTATTGGAGATCGTGAGAGGATGAAGAAAGCTTTCCAGAAACTGATCTGTGTTCCTCTGGGTATTGATGAGGATGACAAATACATCCCCCCTAATGATGACCCACACACAAACCTTGTGTACGAGGCAATTAAGAATGACCAGCTTCgtcagatggagagagagagAAAGGCTCTGGCAGAGAAATTCATCATGACTTCAGCCAAGCTCATTGCCCCGGCGATTGAATCATCCTTCGCAGCAGGATTTGACTGGTGTGTAGAAATGGTGAAAAGCTCCCAGTATGTGGAGCTAGCAAATGACCTAGAAATTAACAAAGCCATTACATACTTGAGGCAGAAGGATTTCAATCAGGCTGTGGAAACGCTTAAAATGTTTGAGAAGAAAGACAGCCGGGTGAAAAGTGCTGCTGCCACCAATCTctcctttctttatttcctgGAAAAAGATTTTGATCAAGCAGACAGATATGCGGACCTGGCAATGACTGCGGACAGATACAACCCAGCTGCCCTGATCAACAAGGGGAACACTCTATTTGCGAAGAGAGACTACGAGAAGGCAGCAGAGTTTTACAAGGAAGCTCTGAGGAACGACTCCTCCTGCACTGAGGGTCTCTACAACTTAGGCCTGACCTACAAGAAGCTGAGCAGGCTAGAGGAGGCCCTCGACTGCTTCCTCAAGCTCCACGCCATCCTGAGGAACAGCGCCCAGGTCATGTACCAGCTGGCCAAATTGTATGAGATGCTGGGGGATCCACACCAGGCTATCGAGTGGCTCATGCAGCTGATCAGTGTGGCGCCCACCGACTCGCAGGCTCTGGCCAAGCTGGGGGAGCTGCACGACGATGAGGGAGACAAGTCCCAGGCCTTCCAGTACTACTATGAGTCCTTCAGATATTTCCCCTCAAACATCGATGTGATCGAGTGGCTGGGAGCCTACTACATCGATACACAGTTCTGTGAAAAAGCCATTCAGTACTTTGAAAGAGCTGCGCTCATTCAGCCAACTCAGGTGAAATGGCGATTAATGGTGGCCAGCTGCTACAGGAGAAGCGGAAACTACCAGAAGGCACTGGAGACCTACAAAGACATTCATCGCAAATTTCCAGAGAATGTAGAATGCCTGCGGTTCCTGGTTCGCCTCTGCATGGATATGGGTTTGAAGGAGGTTCAGGAATATGCAACCAAGCTGAAGAAAGTGGAGAAGATGAAGGAGATAAGAGAGCAGCGTGTGAAATCTGGCAGGGAGGGTAGTGCCCGTGGGCGCAGAGAGGGCAGTGCCAGCAGTGTCTTTCCTGAGAGTAGACACAGCCCTGTCCTGGAGCAGGTCAGAGACAGTGGGCACAGCAGCCATGGCACCAGTGCCAAGGGAGAGCGGTTGAGTGCCAAGCTGAAGTCCCTGCCGGGAGCCAACGAACCGTACGAGGCCAGCAACAACAAAGACATAGGCAAGTATGCCTCTTATGTCGACCCCCTCGGACCGCAGATAGAAAGACCAAAGACAGCTGCTAAGAAACGGGCTGAGGAAGACGATTTTGCTGATGAAGAGCTGGGAGATGACCTTCTGCCTGAATAGACTATCCTCGCCATTCAGCAGCTGCTGTTCACACGGCTCTTGTGTGAATATTCTGACTGTAGACGCTGAACACCACTCTGCTAGCCTTTGCTTTAGGTTTTGAAGTTTAAACCAATGTTATCTTGCTATTATCaactatattaatatatttatcacCACCATTATCCATGcagctgtaaaatacatttatttatttttgtaattcaatGCAGTAGCTCTTTAATAACTCAAAccgattttgtacattttatataaattatccTTATAGTTTAACTGCCTTCTTAATGGCACACATTTCCTATTGCAGACTCTTCAGAAAAGTTATGTTTTACACgtatgaatttaaaatacaccATTGCAAAATGTGACTAcccaatgtattttattagtatAAGCATATGTAAGGAATATAAACGTGTGTTagttgtgctttttattttggtctttaTGAAGACGTATGGTGGCAGGCATTATTAGATCAAAGCTTAGTATAGTAACAGGAGTATgttgctgtatttctttttaaatgtctgtacattttgtaattgtgaaacaaaatataaaa

Function

symbol description
ift88 Predicted to enable kinesin binding activity. Acts upstream of or within several processes, including cerebrospinal fluid circulation; plasma membrane bounded cell projection organization; and tissue homeostasis. Located in axoneme and ciliary basal body. Is expressed in forerunner cell group; head; nervous system; and pronephric duct. Orthologous to human IFT88 (intraflagellar transport 88).

NR:

description
intraflagellar transport protein 88 homolog

GO:

id name namespace
GO:0042073 intraciliary transport biological_process
GO:0045494 photoreceptor cell maintenance biological_process
GO:0042462 eye photoreceptor cell development biological_process
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0001539 cilium or flagellum-dependent cell motility biological_process
GO:0045880 positive regulation of smoothened signaling pathway biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0007369 gastrulation biological_process
GO:0060785 regulation of apoptosis involved in tissue homeostasis biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0072019 proximal convoluted tubule development biological_process
GO:0005930 axoneme cellular_component

KEGG:

id description
K16474 IFT88; intraflagellar transport protein 88

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014516 True 3124 mRNA 0.46 27 16346034 16370627

Neighbor

gene id symbol gene type direction distance location
AMCG00014513 NA coding upstream 67596 16258241 ~ 16278438 (+)
AMCG00014512 mphosph8,LOC106586589 coding upstream 137894 16191923 ~ 16208140 (+)
AMCG00014514 NA coding upstream 156373 16164845 ~ 16189661 (+)
AMCG00014507 NA coding upstream 191378 16139473 ~ 16154656 (+)
AMCG00014506 fdx1 coding upstream 309274 16008399 ~ 16036760 (+)
AMCG00014517 NA coding downstream 1126 16371753 ~ 16373757 (+)
AMCG00014524 sap18,LOC107597378,LOC107668906,LOC107569214 coding downstream 66550 16437177 ~ 16438737 (+)
AMCG00014522 NA coding downstream 78036 16448663 ~ 16450651 (+)
AMCG00014523 NA coding downstream 103167 16473794 ~ 16481556 (+)
AMCG00014531 wars2,LOC106531917 coding downstream 186937 16557564 ~ 16578157 (+)
G70637 NA non-coding upstream 105696 16237110 ~ 16240338 (+)
G70562 NA non-coding upstream 427413 15918413 ~ 15918621 (+)
G70496 NA non-coding upstream 617117 15727434 ~ 15728917 (+)
G70418 NA non-coding upstream 821019 15522525 ~ 15525015 (+)
G70415 NA non-coding upstream 839986 15505814 ~ 15506048 (+)
G70735 NA non-coding downstream 119784 16490411 ~ 16491118 (+)
G70776 NA non-coding downstream 360251 16730878 ~ 16733637 (+)
G70835 NA non-coding downstream 658333 17028960 ~ 17097964 (+)
G70846 NA non-coding downstream 761436 17132063 ~ 17173062 (+)
G70865 NA non-coding downstream 879692 17250319 ~ 17253671 (+)
AMCG00014508 NA other upstream 207002 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 660135 15675631 ~ 15685899 (+)
AMCG00014470 NA other upstream 1103701 15221914 ~ 15242333 (+)
AMCG00014461 NA other upstream 1989166 14302447 ~ 14356868 (+)
AMCG00014456 NA other upstream 2141020 14189564 ~ 14205014 (+)
AMCG00014525 NA other downstream 94994 16465621 ~ 16469209 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other downstream 994171 17364798 ~ 17487050 (+)
G71004 NA other downstream 1901227 18271854 ~ 18274360 (+)
G71525 NA other downstream 6484715 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 10534250 26904877 ~ 26911237 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_09770695_09782443 IFT88 coding CI01000009 null 9770695 ~ 9782536 (+)