AMCG00014523


Basic Information

Item Value
gene id AMCG00014523
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16473794 ~ 16481556 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014523
GGagtgggagagaaggagggggagacCGACAGagggtcagagagagagggagagagagagagagagagagggtgggaaaGTGAGCAAGAAACGAATGCAGAGCAATTAATTTAGATCTCCAGTGCAGCTTGTGCAGAAACTTATCCAGGTTGTTCTTTGGTGcagtattacattttctaaCCACATTAGGGAGCAAAACGTGTTTTTAAAGAGTTtatgttttagaaaaataagcTATTTTTTCTATGAATACTTTGGAGCTATActagtttttcttaattttctttgttttaagttattttcCTGGATAAGAAAGAAATATGCACACAACTCTGTGGAAGGAGAACTCAACCATGTTTGAGACCATGTTCTATGGGCACCCTCAGTGTGTGGAGTGGACCAATGACTTGGAAAGCTCTGTGTACCATCTTGCCAACGCGATATTTGTCTTGGGGTACATGGGGGGCAGTGCGGTGTTCGGGGCCATCTACATCTTCAGCCTCCTGGCCCCAGGCTTCCTGTGCTATGCCTTTTGGGGCTGGATGGGGGCTTGTGGTGCAGATATCGTCTTCTGGAGCGTGCTCCTGTTAATCCTCTGCCTCCTACAACTGGCTCACCTCATCTACCGGCTGCGGAAGGACAGCTTCAAGGAGGAGTTCGACACCCTATACAAAGGCATTTACCTACCCTTGCAGGTGCCAGTGCTAGTCTTCAAAGAGATCGTCACAGCCTGCGAGAGCAAGGTCCTCTCCCTGGACAAGGACCAGAACTATGCAGTGGAGGGGAAGACCCCTATAGACAGGCTCTCCTTCCTGCTTTCAGGGAGGATTCGGGTCTGTTTAGAAGGCCAGTTTCTACACTACATTTTCCCGTACCAGTTCCTCGACTCTCCTGAGTGGGAGTCCTTGCGGCCTACGGAAGAAGGAATGTTTCAGGTGACTTTGACAGCAGAGACGGACTGTCGCTACATTACCTGGAGGAGGAAAAAGCTCTACCTATTGTTGTCCAGAGAACGCTATATCGCTCGCCTCTTCTCCGTGATGCTGGGGAACGACATCACAGAGAAGCTGTACTCCCTCAATAATAAGCTTTTTGCCAAGAGTGGCGTGCGCCTGGACATCCGTCTGCCCAGCCTGTACCACGTCCTGGCTCCCTCCACCAGCGAGGTAGAGAGCGAGAAGACAGAGGAGCAGGGGCCGAGCTTCATGCCTGCTCCACAAAAGACCACCCCGCCTGCTGGCCCAAGAAAGAACTCAGCACCCAATGTGAGCCACCCTTACCCCGGGCACTGGCCCTCAGATACGGAGATGCCTGGTGAGGACTCTACCAGTCTGATAGTGGAGGACTTTGCAGATATGACGGGATCCTTTATGGAATATGGCAGTGAATTATTTGACATAGAGAATGGTTATAGGAGTTAATACACTGGCCTGTTCTTATGTCACATGTAAGTACACTGTgtgctgaaaaggaaaaaagagctGCACTTGTACTAACCTGGCCTTGAAACTGGTTCACGCTTATGTTAACATAAAAGTCGAACTTGTGTGAGTATATGTAATGCAGTTCTCTATTTGTCCTGCAATCTTTTGGCTGGTGTGTCTAATGCATGGCTACAGgacaatgaaattaaatgctgtATTACTTACATGATAGCCAAACATTTCCAGTTTTCAGTGAAGCTTTTCTACCTCAGTATATCACTTTTTGATATACGTTTACCTTACACTGGACCATTTAATTCACAGTGAGAGGCCTGTTTTCACAATTGTATATACCACTGTAAATATAGGTGAAGAAATTATGAAAGGATAATATTGTAAAATTCAAGATAAAACTTAATAGTGTTAGTAGTGTAATGTTTGTTTAGAGATCTTATGAAAAGAGCTGGGAACTGTATTATATCTATGGTCAGGCCTAGTGCCAGCAGATAGCTTGTGTGGGCATCTCTCCATTGCACCTCAGATTGAGACCTTTTCCCCTGCCATGCAGCGCTGGGCCTCTGAGGAGATTGATTTTGCTGAGTGTGTAGTTTTGTGTGTGATCCATTGTCATGCATTACCAGCTCAGTACTGAATCATAGGCTTTGAGAGCTGAAATCTGCAACATACTAATGTCCAACACCATCAGCTAGGTATGTATTTCTCTATATAGTTGGGAAAGGgcctttcaatttaatttgtagaGTAGGTTTTCAAGCCTGTAGcccaaatatgttttgtttagttaaattaagagCTGGCAAGTTTGGGGATAGCCACCAGCCTCTGTTTTAATCCTGCATGCTTCCCTGCAAACAGCCTAGGACTGCGGGTTAGGTTGTGTCCTGGGCGTGGTTAGCTGGAGCAGCTGCTGAGGATTCCGCTGGTATGTCAAAGTTCCGACCTTCAGAACTTGTTTTCAAACCGGGGCCGGAGGTCAGCCGTGTGAAAGAAGAGATCACGGGGCTTGGAGTGGATAACAATATTTCCCTCTGTGCCTGTGCCAATGATAGTTCACAGACGATAATTTAAAAGGTGATGTTCTCTTCTCTCACCGGACAACAACAATTTAATGTTGGGTTCACTCACCGGATTCAGTTtcctatttaaagaaaataattggttGTTGATTCCAAGAGAGTGATCTAGCGTTTCAAAGAGGAATGCTTTGCAGACTTCGTaagtttatttctttgtcaaacTGCAGACCATCATTGGTATCCAAATGATCTTTCTGTAGTGGTTAAGAGGTTTTTGTTGACATAAAGATATACAGCTTTTGCATGCCTTATTTATCATCAATTTACAATTACAACCATTGTCGACTAGAGCTttcttacttttatttaatgtgtacGGTAAGTTGATATATTGTGTTCCTTCATTGTAGGCttgaaaacacaagaatataACAAAATCTATTCTTTTCAATCTCTCAGAAGTTTATGACTCTCTTTTCACAGTAGGCTTTACACATGTGACCTTGggaataaaactaattaaagacTGTCTGATTGTGTAGTTCTGGGAGCTAAATCATTTAATGAAATGTTCCATTGGGAGATAAGTATAATTAGTTGCCATTTGATTCAAAGCATGACCAATTACAAGGAAAGAACGGATCTATTTCTAGTGACACAAATAAAGTTTTATCTTTCTTATGCATGTCACTGTGCTCGGCTGCTTGTTTAAAGACGAATGCTTATCAGGTATCTGTCAGACAACACTGCACTACTTCTGGTTACCAAGTGTGAAGGACAGCAAGTAGAAGGGAGGGAGTTGGACTGACTCTCACTAGCTTAATCACACAGATGACCTTGGATATAGCATAgctttgaaatatgaaattcaaacatagataaatgattaaatcaatagatagacaagagagagagaaagagagaggtcaTCTGTGGTAGAGAAGAGAAGAACAAAAGTCACGTATCTTGTCTTTTTCTCCCACAGCCGGAGACAGCCGACCTGGAAGTCTTTCAAACCGTATTCATAGAGGAAGGGCCCCGTTGGCTCCTACAGAGACCCCCGAGCTctgagacagagaaacagacaggcAGATGGAGAGACGCACAGACATCTGCTTTCACTGAGAGTGCAGGATAGAAGGAGCATCCTATCACTTCCACTAGACTTCACCTGAGATGGGTTTGACATGCACTTGCACAATTGTTTCAGTTAGAAAATCCCACTTGTACTTTCACACACCAAAAGAGATTCCTTTTTTAACTATGATGATTGTTTGATTAGattacatgaataaatgtatttccagGATAACTGAAAACTGAATGTGAGCTTACAAAATTTGATTTCATCCTGCTGTCGTCCTGCTACTAATTAAACCAAAGCATTTTGTAAAGATTTGGTAAGGAAttcctgtttttgttcattgattttacataaataatcacaaacatgcatattgtggtgtgtttttatatgttatAAAGTGTAGACATTAGATTTGAGTTTAACACAagaaaatatttgcagataAACAATAATTCTAAAACATTCAGGTTGAACACTACCTCCTAAATATGGATAGGAAAGAAAAACCTTGGTGTACATTTGTTGTAATACATCACTTATAATACTTTCATGGTTAACTTCCTGCAGATTttggaatacattattttgaaatacaaacaacatACATTAGATTAGAGGTATTcctcaaaacagaaaatattttcacaaaccttactcaaatatgttttaatcatttataaGACCTCTGCGATCATTTCAGTTAGCACTTGAAAAATACAGGGCTATTATTCCGCTCATTTTTTGATAATCACAGTGTGTGACTGGGAGATTCACAAAGCCGTTTAATCCAACGTGTCTTTAGAAAGggtgacattttaaactgattaaaGAAGCACTTACTGATTCTagaatgtttaataaaacaaccTTGGACTTTCATGTTGGCTGCTCCCGTTTAGGACAAGGCCACAAACTACACTTTAAAActgatgtttatatatttttcgcCAAAACACATTatgtataagaaaaaaaaaagaaaaaataagaaaagataagaagcattggaaaaaaaaaatgattcacTATTGAAAAAGGTTATTTGCTATACAGCAGATGTAGTCTCACgcccccccaaacaaaaaaacataaatcacaatTCAAATCCTGTAAATGTCTAATTACTTTTGCCCTCTTCTTCTTAATGCTGTGTGCTATTATGTAGctttttacaaataatgttaatttaaacaaaacgtTTCTTCTAATGAAATATGCTTAATTCCCCTACTCTCTGTTGTTAACCTTAGAGTACTCAATGTAAGGTTTACTTTTCTGTTCTGAATGTACTTTAGTATTGGAATATGAACTATATCACACCCTGACACTCATGCAGAAACTATTTCATAAATGCCATTATGCATATGCATCACACATTGACtggtgtaaacatttttttaatatgttttagtttagtaattttataattttaaagtgtttttaaaaggatgACAATGTCTGATTTACTTGTGCAACTCATTgctttcaatatataaaatataggttAATTCCACATATTAAAGTGAAGCAGAACACGTGCTATCGACAGTTAATCAACATAAACTAAcacaaaatttaattaaaattaacacaaCTTCCTTGCACAGATGTTAGCCTTCACaagaattattatatatactatattaaaataataagatagAAAAATACACATGTGTTATGTATTAGGAGGCAGCTCAGGCACATGTGTTGGTGAAGTGTTAGTCACAGTACAGACATGGCTAGATTTCCATGTTGCTGGTGGTACACAGATGCACAAAGTCATGGGACCATGGAGCATTTCTTCGGAGCACTATATCCTCCACACATAAAGGTTCCTCCTTCCCACTGCAATAGAAATATAACATGATATGATATGGCACCACTCCAtgaatgtattactgtatttcCAGTAGCAAATATTACAGGTCTCAGATGTACAGTACGCTCAAATAAATTATTCTGGAGGATCATGAGCTTTCCcttgcattgtgtgtgttagGGTTAGCTTGGCAACAGAGCTATAACTTCCCTGGc

Function

GO:

id name namespace
GO:0051146 striated muscle cell differentiation biological_process
GO:0061337 cardiac conduction biological_process
GO:0001947 heart looping biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014523 True 5582 mRNA 0.40 3 16473794 16481556

Neighbor

gene id symbol gene type direction distance location
AMCG00014522 NA coding upstream 23143 16448663 ~ 16450651 (+)
AMCG00014524 sap18,LOC107597378,LOC107668906,LOC107569214 coding upstream 35057 16437177 ~ 16438737 (+)
AMCG00014517 NA coding upstream 100037 16371753 ~ 16373757 (+)
AMCG00014516 ift88 coding upstream 103167 16346034 ~ 16370627 (+)
AMCG00014513 NA coding upstream 195356 16258241 ~ 16278438 (+)
AMCG00014531 wars2,LOC106531917 coding downstream 76008 16557564 ~ 16578157 (+)
AMCG00014535 tbx15,LOC107712261,LOC107724509 coding downstream 102268 16583824 ~ 16611661 (+)
AMCG00014537 NA coding downstream 210456 16692012 ~ 16719737 (+)
AMCG00014538 NA coding downstream 240642 16722198 ~ 16731869 (+)
AMCG00014536 gdap2,LOC104943794,LOC104954255 coding downstream 255927 16737483 ~ 16765552 (+)
G70637 NA non-coding upstream 233456 16237110 ~ 16240338 (+)
G70562 NA non-coding upstream 555173 15918413 ~ 15918621 (+)
G70496 NA non-coding upstream 744877 15727434 ~ 15728917 (+)
G70418 NA non-coding upstream 948779 15522525 ~ 15525015 (+)
G70415 NA non-coding upstream 967746 15505814 ~ 15506048 (+)
G70735 NA non-coding downstream 8855 16490411 ~ 16491118 (+)
G70776 NA non-coding downstream 249322 16730878 ~ 16733637 (+)
G70835 NA non-coding downstream 547404 17028960 ~ 17097964 (+)
G70846 NA non-coding downstream 650507 17132063 ~ 17173062 (+)
G70865 NA non-coding downstream 768763 17250319 ~ 17253671 (+)
AMCG00014525 NA other upstream 4585 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 334762 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 787895 15675631 ~ 15685899 (+)
AMCG00014470 NA other upstream 1231461 15221914 ~ 15242333 (+)
AMCG00014461 NA other upstream 2116926 14302447 ~ 14356868 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other downstream 883242 17364798 ~ 17487050 (+)
G71004 NA other downstream 1790298 18271854 ~ 18274360 (+)
G71525 NA other downstream 6373786 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 10423321 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 11353947 27835503 ~ 27841871 (+)

Expression


Co-expression Network