AMCG00014527 (LOC104951642)


Basic Information

Item Value
gene id AMCG00014527
gene name LOC104951642
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16411736 ~ 16420491 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014527
atgaaaaataatgccAGTGCTCTTGTGCAGGAGATGGCTGTCCGTGCCCTGAAGCAGACTGGGAGCAGGAACATCGAGGCAGCACTGGAGTACATCAGTAAAATGGGTTACCTGGACCCTCGCAACGAGCAGATTGTGCGCGTCATCAAGCAGACTTCGCCAGGAAAAGGGGGTGCACCAAGCACTGTGGACCACAGACCAGCATTAGAGGGAACAAGCGACGGCATGCCTCCCTATCATCAGATGGGAGGCCCACTCTACGAAGGAGCAAGCTATGGGCCCGaaagcacaaacacactggGGGAAATCCAGAGACCGTATATGGGTGCCCCTGTCTTGAACTACATGCTGCCCTCCCCTCCACAAGCCCCACCCATGGGCAATCCCCTGGGCAGGCCCCCAAGTATGGGCCCATACCCAGCACTCTCTACGCAGAGCCCCCCAGGGAATTCCATGTTTCCTCCCTGTGATCTCAAACACCAGCAGAAGTCATACCCGGGCAGCGTGGACCCGGCCATGATGAGCTACCCTGTTCCCAACCAGCCTCTGCAGCTCCAGGCACCACCAGCAGGGCCAAACAGCCCCCATTACGGCCGGTCACACATGATGGAGGCTGGATATGGTGTGCAAAGGAGCTCCTCCTTCCAGAACAAAATGCAGCAAGAGAATTATGTCAACCTGCAGGGCAAAGGAGCCCTTGGTCAAAATAGCAGCGGGTACCCCAACCTGTACCTCCACTCCCACCCAAGGCAGTCAAGTCCCACCTCTCACCAGGTGCACATGATCTCCCGACCCCAAGCAATGGGATCAGACTTCCCTGACGTTCCCCCCAGTCTGCTCACACCATCCAGAGCCAGCCTCAACCTGGACCTGTATGAGCACCACTGGGCAGCGCCCTCTCCTGGCCGCCACGACCCAATTCCCAATCCTGTGCCTGAGGGAGTGCCTAGGCAGTCACAGCAGGGGCCCTTCAGGGGAGAGGTACATGTCCCCAGCAGAACCAACTCTTTCAACAACCACCAGAAGGTCAACGTGACAGTCAGACAGAGTCTACCCAGCAGCAAGCAGGACCCTTCCCTTGGGCCTCCGAACACCATCACCGCAGTGACTTCTGCTCCCATCCAGCAACCTGTCAAGAGCATCCGGGTGATGAGGCCAGAGCCGAAGACCGCGGTAGGCCCCTGTCATCCCGGCTGGCTGGCTGCCCAGTCACAGGAGGCAGCTGAAGCTCATTGCTACACAGCGGGTGACAACTACAGCCTCGAGGCAGTCGACTATGGCACCCCAGAGCCAAGATGTCCCCCTCCACCATATCCCAAAACCTTGTTACTCCAGGGGGCTTCAGAGCAGCCGTCTCTAGAAGGAAATGGCCTATGTGGGGCTGCCGAGCTCAGCCCTCGTCCATTGCCGGGCTGCAGCAGTAAGGTGGAGGAAGCGAATGGCGGAGGGCTGCCCAACGACAAGGCCAAAATGGTTAAGGGTGAAAAGACTGTTAAAGACAAGAAGCAGATCCAGACATCACCGGTGCCAGTGAGAAAGAATGCCAAAGATGAGGAGAAGAGGGAGTCGCGAATCAAGAGCTACTCACCTTTTGCCTTCAAGTTCTACATGGAGCAGCATGTGGAAAACATCATGAAAACATACCAGCAGAAGCTGAACAGGAGAATGCAGCTTGAGCAAGAAATGTCCAAGGCTGGTCTGTCGGAGGCTGAACAGGAACAGATGAGGAAAATGCTGTACCAGAAAGAGTCCAACTACAACCGTCTGAAGCGCGCCAAGATGGACAAGTCCATGTTTGTCAAAATCAAAACCCTGGGAATTGGAGCATTTGGGGAGGTGTGCCTGACACGCAAAGTGGACACCAACGCGCTGTATGCTATGAAGACTCTGCGCAAGAAAGACGTGCTGAACAGGAACCAGGTGGCCCACGTCAAGGCAGAGAGGGACATCCTGGCCGAGGCCGACAACGAGTGGGTAGTGCGGCTCTACTACTCCTTCCAGGACCGGGacagtttgtattttgtcatggaTTACATCCCTGGGGGCGACATGATGAGCCTGCTGATCCGCATGGGTGTTTTTCCTGAGCACCTGGCCTGCTTCTACATTGCCGAGCTGACGTTGGCCATCGAGAGCGTGCACAAGATGGGTTTCATCCACCGCGACATCAAGCCCGACAACATCCTGATTGACCTGGATGGACACATCAAGCTCACCGACTTTGGCCTGTGCACTGGCTTCCGCTGGACACACAACTCCAAGTACTATCAAAAAGGGAGTCACATCAGGCAAGACAGCATGGAGCCCAGTGATTTCTGGGACGATGTGTCGAATTGTCGCTGTGGAGACCGGCTAATGACCCTGGAGCAGAGGGCAACCCGGCAGCACCAGCGATGTCTAGCTCATTCTCTGGTGGGAACCCCCAACTATATTGCTCCAGAGCTGTGTGATTGGTGGAGTGTTGGCGTGATCCTGTTCGAAATGCTGGTTGGGCAGCCTCCATTCTTGGCTTCAACTCCGGCAGAGACACAGTTAAAGGTGATAAACTGGGAGAACACGCTGCAGATCCCCCCCCAGGTGAAGCTGAGCCCTGAGGCGGTGGACATCATCGGCAGGCTGTGCTGCTCGGCCGAGGAGCGACTGGGGGGCAATGGGGCGGGCGAGATCAAGGCCCATTCGTTTTTCCAGAAGATGGACTTCTCCAGCAACCTGCGCACCCAACCGGCGCCCTACCTGCCCAAGATCAGCCACCCCATGGACACCTCCAACTTCGATCCCGTGGAGGAGGACGGGTTCAACGGTGCCTGGAGCGACAGTGGGGACAGTGCCAAGGCTTGGGACACACTGGGCTCCCTGCACGGCAAGCACCCCGAGCACGCCTTCTACGAGTTCACCTTCCGCCGGTTCTTTGACGACAACGGGTGCCCATTCCGCTACCCCAAGCCCCCGGAGCCCGCCCCCAGCAGCCCGGGACCAGAGGAGCAGGCTGAGGGCTGTGAACCTGTCTATGTTTAAAGAAGGCCTGAATGCAGGCTCCTCGTCAGCAGGCAGGCATCTGTCCGAACACGGAACAGAACATGTCGGGGTCAAAGAGTTCCCTGTGTCTCCTTCCCCTCATCCTGCGGTCGGCTGCAGCTCCTCAGAATGAGACAGTAAAGCAGCGCTGGGTCATCTGCAGGGCCTGGCTTGGTGTTTCTGCTCCTCTTCAGAATAAAGGATTCGCTTCATCCCAAGAGAGATCTtcagataaaataatagaaaaagcTTCTCGTCACTAGGTGGGGTGTAGAAGATTTCCCAACCTCCGGTTTGATAAAATGTTCAGATCTGAGATGCCAACATATCAATGATTTGagatttaaacaaaactttgtTTAGTTTGTGAAATCTCAACAATTGTGATGAAGCAGGACTTCAAAAATAACTGGGCAGCAGGATAGAATAGAATCTGAAGCCAGCACCCATGGCTCAGAGCAGATCAATAAAGGCAGTTGTGGACACGGGCAATTACCCCTTTTTCTTCTGGTTATATTTTAACTGGAAGACCCCTATCAAAGTGGGACCAAGCAATTCCAGTTCATAAGGGAGGGGTTGAAACGAAAACCAAGCACAGCCCTGATTCAACAGATAGGCGCATTGAAGCCATTCTGAAGTGAATTCCACCACAGCAGACTCGATGTCTCTTTTTGAGGTTGCAGGGGTTATTGTGGCAGGTGCCTGTTTTGCTGGTGCAAGAGTTGATCCTGCCTTGCAGCCCTGTGATTGTTCAGAATTGGTGAGGTTTTCTCACCAACTGGGTTCTCATCGAATCACACCATCTGTTCTGAAGGGGAAGATTGAATTAAAGTCAAATAAGCTACCATTATGCCTTATAATTCCCACCTTCAGTGATATTCACGGTATTGCAATTTTAAATACCAGCTTAgtgatttacaaaacattgtaaacCTATATATTTGCAGTCCTCTGTGTTTTCAGTTCCTGTTTTCAGTGTAttccttttctgtgtttgtcatCATTAGTTACTAGCTTGCagctgtttcattttaatgttttgtatttattttacatgtctgATTAACACTTAACTTATAAAGACCTTTTATATTATACAATGTGTAATGACATCTTTGTTTAGTATAGCTTTTTCTGTACATGGTAGTTTTAACATGAATAAGAATAATGTGTAAACTGTAGGTCTCTATATCATTAGCCACGGAGTGCTTCCTATAAAGTTGTGTCATTTGTAAATCACTGCTGGGTATTTCAAATGGCGTGTTGTGTAACGCATTCTTTCTTAAATACAATAAGAGTAGACAGAATGTGCAGAGGGCAGCCATTTGCATCCTTGCCAGTGGAGATTCCCCTGATGTGTAGGATGTGATTGTGCCAAAGCATTCTGTTGCTGTTCCTTTTGTTGTGTTCTCCAATGCATTGTTCGAACTGCCAGCACTTAACCAggaaacagtgtctgaatgtgAATGGACTTTGTGATCTCAGATGCTGTCGGTCTTCATTCACCTCACTAAGCACCTAAAAGCAAATGTTGATTAAGCAATTAGTTTCTTGTACATCCTTTTTTACCTCTTCAAAATGGAGCACCATAGAGTATaccaaaaaaaatgcattctcattaaagtttaattaacaTTCTCAACTCAATATAGTGAAAGGAAAGGTCAATAAACCTccattaagattaaaaaaaactaaacctatATTGGAGGTAAATAAGTGAAGTGCAAAACTGCAGGACTTTGTTGGGTGCTTTAAATCGATAactatttttgaatgtaattCTTTGAGTTTCACTGTCGTCTGTGTAACACAAGCTTATGTGATGAAAAAGCATAGCTTGACAGCATTACTGCCTTGGTACCGGAGAAAACAAATAGTCTGAGTAGAATATTTTAGAAAGTATACAATACTTGCTGAGGTGCTAAGATTGACAGCGTCTTTGAGACAAGTCTCCAGAAAGATACAAAcaatcaaaagtaaaataaaagtgcttgCAGATGAAGAGCATGTGATAATATGACAATgtgcaatacagaaaatatgatatatagTTTTCTACACACtacaattatctttaaaaaaagtataatgtttaaatatatatatattttatagtttgtatCTTTTGAATATAGTACATGACCTAATGCTGCTTTTCCCcattcttcttcatcttctttttcctcttcttatAAACAGAGTGGGTTTGATTGAAAGTGTGGAAAGTGTCACGTACTATGTGCCATCTAAGTGAATGTTGTGGGGGGGGATTTCTGCATGATCAGCGTTTGTGAATGTTGAATGAAAATCGTTTCTGTTCACTCACAGGCTGGTCCTGTGCAAGACAGGGAGAGAATTACTAAAACAACGACACAAAGGTACATGCAAACCTGGCAATTTGagaaaaaacagttttaaagtatagcagtgattttttttatattgttattacaTAATTGTGATGCACCTGGTTAATTTAGTCTTGCAAACACAAGTTAATATTGTAGAATATGATATTTTGTGCAGAGTAGGAAATATCCATGTATACCTACTCTGAGGTGCTAAGTGATTTATATGTTCCCCTTCATATAACTTCTAGTTTTGGCATGTAACTCCTTGCAAATCATTCATCCAGCCAAGACTTTGCAAGTGCTTGTTGTTTCCTATGGATTACTCATGTCTCAGAATGATCAGTAAAATTCCAGAGGGATTTCAGGTGTAAACAGGATAAATTAGTCCTCTCAGCCTGGCAGACACTCAGTGGTGTTGTATCTCTCTAGTGATCTTTGAAATAAAGACACTTTTCCATTACAAAAACATGTGATTAAAGGTGGGCAGCTACTTAATAAAGTCACTTAACGGATCACAGGTACTCATTTAATCTTGTTCCAGTTCTTAATATAGAAGAAGCAGGGTTACAAATAtaaaagaacacaaattaatatcCCCCATCCTGGCATTAAATTCCACACCAATGTCAGCTACTGCCAGATGAGTTGATCAAAATTACATGATAATTGAAATATAGTCACTGCTTTGTAAAGAATTGGAAAATAAACttctacaaaacaaattgtattgaGAACGCCAGGAGGCTGAAAACAGGCCCAGTGTAGGTCAGTCTTCCTCACTGTGCTGCCAGTTACACTTTGTATTCTTGGTGCTCTCTGCTGAGATGGAATTTACTTGCACTAAATAGTAGCTATATGAGGGGATCTTGTACCAATTCAGGTTCAGAATATATAGTGTACACAATCACAACAAACGTGAATTTGAAGAAATAATACTGCAAGACTGAAAGTAATCATATTGTGTGAGTGTGCCTGAGGGATGCCTTGGATTTTCCACATTGTGTTTTGAGAGTGCTGACTGACAATCTTTGACTGACTTAATCCCTATTTTAGATTTGAATTATATGACTTTCTTACCCTGTGTCGtatttttatttgggggggatACCTGTATTACCCCCCTTCATGTATAACACAATAATATTACtcgtaaaatatatttatacatagatatacatatttttttgtataatgtttaCTCTCTCTCATGTATTGTGTTTTAGATCCTTCATTAATCTGTATGTCTAGTTATTCTCACCACCcgtataaacacaaataaacatgaacaagAAACATGCAtcttcttttttacatttatgtatgaAGTGAGTATTTAAAACATCTGCTCTGACTGCCTTTCAtgtgtaaaaatataacaacatacaacaacttcagtattataatttttttacatttttatttttacctgtaACCCGTTAAGTGGTATGTATTTCTCAGGAACTCAATCCTCacactgttatttattattgtaattatcttTGCATTTGAAGGCTTGTCTTGGCGTAGTGTATCAGTGCAGTAAACATGCTACATAAAA

Function

NR:

description
PREDICTED: serine/threonine-protein kinase LATS2-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08791 LATS1_2, Wts; serine/threonine-protein kinase LATS1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014527 True 6927 mRNA 0.46 6 16411736 16420491

Neighbor

gene id symbol gene type direction distance location
AMCG00014528 xpo4,LOC106582068 coding downstream 2448 16380894 ~ 16409288 (-)
AMCG00014518 NA coding downstream 34763 16375420 ~ 16376973 (-)
AMCG00014519 NA coding downstream 65381 16316534 ~ 16346355 (-)
AMCG00014520 NA coding downstream 102930 16308288 ~ 16308806 (-)
AMCG00014521 LOC106575534,LOC106575594 coding downstream 104263 16300633 ~ 16307473 (-)
AMCG00014530 NA coding upstream 4904 16425395 ~ 16431657 (-)
AMCG00014526 NA coding upstream 18804 16439295 ~ 16446968 (-)
AMCG00014529 NA coding upstream 31390 16451881 ~ 16457368 (-)
AMCG00014533 NA coding upstream 59396 16479887 ~ 16496581 (-)
AMCG00014532 NA coding upstream 76796 16497287 ~ 16504076 (-)
G70689 NA non-coding downstream 42272 16366124 ~ 16369464 (-)
G70679 NA non-coding downstream 129837 16281685 ~ 16281899 (-)
G70660 NA non-coding downstream 197609 16212544 ~ 16214127 (-)
G70491 pdcl3,LOC106586481,LOC102788355,LOC106582251 non-coding downstream 708422 15700208 ~ 15703314 (-)
G70458 NA non-coding downstream 766822 15643619 ~ 15644914 (-)
G70731 NA non-coding upstream 45288 16465779 ~ 16469228 (-)
G70876 NA non-coding upstream 863828 17284319 ~ 17284576 (-)
G70898 NA non-coding upstream 928945 17349436 ~ 17350972 (-)
G70954 NA non-coding upstream 1583319 18003810 ~ 18004023 (-)
G71016 NA non-coding upstream 1908706 18329197 ~ 18331100 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 3277985 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 4744199 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 5274650 11125029 ~ 11137086 (-)
G69537 NA other downstream 5613589 10796716 ~ 10798147 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 6350506 10058097 ~ 10061230 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 301582 16722073 ~ 16737877 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 1026377 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 1168776 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 1570160 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 2781312 19201803 ~ 19203567 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location