AMCG00014531 (wars2,LOC106531917)


Basic Information

Item Value
gene id AMCG00014531
gene name wars2,LOC106531917
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16557564 ~ 16578157 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014531
ATGAAGTTCTTAGCGTCAAAGTGGGCTCCTGGGACATCAGTCAGAGCAGAAGGCCCATCTTTCAGTGACAGGATACAGGCCTGTTTAGAGGGGCTGTTGAAGACTAAGGCCTTCATGCATCTTGAGATCCCAGCCTGGCCGCTCTCGTTCTGGGCTGTGGCCCCCTACAGTGCTGCAGTTCGTGTGTTCTCTGGGATCCAGCCCACAGGGATCCCCCACCTGGGGAACTACCTCGGTGCCCTGGAGAGCTGGGTGAGCCTGCAGGGCCAATACGACTCGGTGCTCTACAGCATCGTGGATCTGCACTCCATCACGCTTCCCCAGGACCCGGCCCAGCTCAGGAACAACATCCTGGACATGACGGCCAGCCTCATCGCCTGTGGCATCAACCCACAGAAGTCCATACTCTTCCAGCAGTCCCAGGTGTCTGAGCATGCAGAACTGTGCTGGGTCCTTGGCTGTTTGACCAGCATGCCTCGCCTTCGACATTTACCTCAGTGGAAGATGAAGAGTAAACAGAAGACCGAAGGCAGCGTGGGCTTGTTCACCTATCCAGTTCTGCAAGCTGCGGATATCCTCCTTTATCAATCCACTCATGTTCCAGTGGGAGAAGATCAGGTTCAGCACCTAGAACTGGCGCAGGACGCCGCTCGCATCTTCAACAGCAAGTACGGCAGCTTCTTCCCCGTGCCGCAGCCACTTCTCAgtTCAACAAAGAAGGTAAAGTCCCTCAGAGACCCCATGTCCAAAATGTCAAAATCAGACCCTCAGAAGTTAGCCACGGTCAACATCACTGACACTCCAGATGACATCAGGATGAAATTCCGTAAGGCAGTCACAGATTTTACCTCCGaggtgacctttgaccctgaACAAAGACCAGGAGTTTCCAATATGATTTCAATCCATGCGGCAGTCGCAGGACTTACAGTCGAAGAAGTGATTTGTCAAAGTAGAGGACTGGACACCGCCCATTACAAACTGGCGGTGGCTGATGCTGTCATCCAGAAATTTTCACCGATCAGACAAGAGGTACAGAGACTCCGAGGTGACCCAGGGTACTTGGAGAAAGTACTGAAGCATGGGGTGGAAAAGGCCAAAGAACTTGCTGTTCCTGTTTATCAAGAGGTTAGAAAACTTGTTGGGTTTTTGTGAGGAAGGAAGAAAACTGAAGAGTGACAAGGAGTTCTTGTGCATCTGGATCATATATATTAGAcctatatatatacctatatttgttatacattatgtaatgtaaataaaatgtataaatacagttGGGGTGCCATATTGTTTTCTGGAACTCtcacaaaatgtttaaagacAACCAGCGTTTTAGATGCGTTTTGTCTTTAACCAAGTCAGCATTGTGACTGTCACACGCTATGTTTACATGACATGAGGTTTTCCAAAAATGACTGTATTTGGAAAACTGAatcagaaattatatttttatcttaaaaGGCCATTTCTCCTTGTTTACATGACAAGCCAGTTAGTCTTAAAGCGTTCCAcagatgttttttgtaaaatgtagagAAGTCATGCAGACGTATCCGTGGCTGAGCAGAAATTAAGATCAGTTTGCACATGTGCAGTGCACtgtcagaatacatttttagaaaactatttacattgtatctattttatttgtttgttaacaTTCAGAAATCAAGGGGATATTTCTAGGTGTTGTTTTCTGCAAATTGGCTTTCAGAAcattgttacattaaaaaaaaaaaaaaaaaaatgtttacgtCACTTttgatatttgaaataatttccaGGAAACTCGGTTGAATTTGCATGCAACATAAAACTAACATATATGTGGAGcacagtgtttttgtatttgttaacataaaactatttgtaaaacattactTGAGAAATCAAGTGTTCCACTTAAtgctatatattaatatatcttttgaatgttttattttttgttttttaaacccttTTGTGATTGGTATTTGCACAGTGCCTCCCTGCTGTTCCGGTAGCTGAGGAATGTAAAGGGCTCCAACCAGGTGTACAGTTCACTTATTTCATAAGGTATAAAACCAAAGTAGAATAGAAGTAAATTAGTAAATCCTTGATTTATATTAGTCAAACATGGAATACATTTGGAAACAAATACTTGTATTAGTTAGAATTATGAACAGGTGTGTCTCATGGAAATGTCCAATCAAAGATATTTGTTTCTTAGTTAACTGTTTACAATTGGAAAAATTGCATTGAAATAACTACAATCTGAGAGAAAATTAAAGCAGACGAGCCTTCCACATCTGGATctggtagaaaaataaaataaaataaattcacagcAGGTAATGCTTCTGAAAGTCTTTTAGAGAACTGATGGCCAGCCTGTATCTGATAAGAATCTGGGAAGAACCTGAGACATAATGTCTGTTTTCAGATGCAGCTGTGTGCACATATATGTAATCAAaaggtttgtgttttgattttgattttaaatatcttATAAATTGTTGTTGTGTTTAGCTGCATTCCCGAAACTGCAATTTTTTGTTGAGTTAGCTTCTTAATGCAGTGTTGCATTTATCACCTATGAGCAGATGTGTCTAAAGGCTTTGCAGCGTTGTTTCCCAAACGTAACAACATAGATGGCTGAGAAAAAATGCTTATACATCCTTTTGGTCAGGACTGTCTAGAGTGGGATAGCAGTGAAATAATATACAGTTGAAACTGCTGAATAAACACAggggaaaaaatgcattctTTCAGAGCTTCTGGTAATTGGAAAGAAGAGCTGTAACAAACCACTTCAACATCTGGTTTACAATAGAATCTATTGTTAAACAAACCTTAGCCTGGGAATATGTAGAAAAggcaatatgttttaataaaaaaatatatacatgtgctccattttaatttaatttattaattgttctttaataattaaataattg

Function

symbol description
wars2 Predicted to enable tryptophan-tRNA ligase activity. Acts upstream of or within sprouting angiogenesis. Predicted to be active in mitochondrial matrix. Orthologous to human WARS2 (tryptophanyl tRNA synthetase 2, mitochondrial).

NR:

description
PREDICTED: tryptophan--tRNA ligase, mitochondrial

GO:

id name namespace
GO:0006436 tryptophanyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004830 tryptophan-tRNA ligase activity molecular_function

KEGG:

id description
K01867 WARS, trpS; tryptophanyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014531 True 2942 mRNA 0.40 7 16557564 16578157

Neighbor

gene id symbol gene type direction distance location
AMCG00014523 NA coding upstream 76008 16473794 ~ 16481556 (+)
AMCG00014522 NA coding upstream 106913 16448663 ~ 16450651 (+)
AMCG00014524 sap18,LOC107597378,LOC107668906,LOC107569214 coding upstream 118827 16437177 ~ 16438737 (+)
AMCG00014517 NA coding upstream 183807 16371753 ~ 16373757 (+)
AMCG00014516 ift88 coding upstream 186937 16346034 ~ 16370627 (+)
AMCG00014535 tbx15,LOC107712261,LOC107724509 coding downstream 5667 16583824 ~ 16611661 (+)
AMCG00014537 NA coding downstream 113855 16692012 ~ 16719737 (+)
AMCG00014538 NA coding downstream 144041 16722198 ~ 16731869 (+)
AMCG00014536 gdap2,LOC104943794,LOC104954255 coding downstream 159326 16737483 ~ 16765552 (+)
AMCG00014552 NA coding downstream 750756 17328913 ~ 17332815 (+)
G70735 NA non-coding upstream 66446 16490411 ~ 16491118 (+)
G70637 NA non-coding upstream 317226 16237110 ~ 16240338 (+)
G70562 NA non-coding upstream 638943 15918413 ~ 15918621 (+)
G70496 NA non-coding upstream 828647 15727434 ~ 15728917 (+)
G70418 NA non-coding upstream 1032549 15522525 ~ 15525015 (+)
G70776 NA non-coding downstream 152721 16730878 ~ 16733637 (+)
G70835 NA non-coding downstream 450803 17028960 ~ 17097964 (+)
G70846 NA non-coding downstream 553906 17132063 ~ 17173062 (+)
G70865 NA non-coding downstream 672162 17250319 ~ 17253671 (+)
G70883 NA non-coding downstream 738096 17316253 ~ 17317556 (+)
AMCG00014525 NA other upstream 88355 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 418532 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 871665 15675631 ~ 15685899 (+)
AMCG00014470 NA other upstream 1315231 15221914 ~ 15242333 (+)
AMCG00014461 NA other upstream 2200696 14302447 ~ 14356868 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other downstream 786641 17364798 ~ 17487050 (+)
G71004 NA other downstream 1693697 18271854 ~ 18274360 (+)
G71525 NA other downstream 6277185 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 10326720 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 11257346 27835503 ~ 27841871 (+)

Expression


Co-expression Network