AMCG00014535 (tbx15,LOC107712261,LOC107724509)


Basic Information

Item Value
gene id AMCG00014535
gene name tbx15,LOC107712261,LOC107724509
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16583824 ~ 16611661 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014535
ATGAGTGACAGACGGAGATCTGCAGCAGCTCTCAGCTCCAGAGCGCACGCCTTCTCAGTGGAAGCGTTGATTGGgacaaacaagaagagaaaGCTGAGGGAGTGGGAGGAAAAGGACTTGGACTTGTCCATGGAGAGTCTCAGCCCCAATGGACAGCTAGGAGACGGGGAGGACCCGGCTCACTGCCTGGATATCAACCCCGATTCAGAGGCCAGCCCGGGATCCGACAGCGAAGGCCTGGCAGAGCGGACGTCGTGCTCCTTCGGCTCCCACTCAGACCTGGCCCACACGCCCTGCGACGCGTCCCCCCCGTCCTCCATGGAGGAGATCCAGGTGGAGCTGCAGTGCGCGGACCTGTGGAAGAGGTTCCATGATATTGGCACGGAAATGATCATCACTAAAGCTGGCAGGAGGATGTTTCCAGCCATGAGAGTAAAAATCCTGGGCTTGGATCCCCATCAGCAGTATTACATCGCCATGGATATAGTGCCAGTGGACAACAAGAGATATAGGTACGTGTATCACAGCTCCAAGTGGATGGTAGCAGGGAACGCCGACTCCCCGGTGCCCCCGCGAGTCTACATCCACCCGGACTCCCTGGCCTCTGGAGACACATGGATGAGGCAGGTAGTGAGCTTTGACAAACTGAAGCTCACCAACAATGAGCTGGACGATCAGGGTCATATCATTCTTCACTCCATGCACAAGTACCAGCCCCGTGTGCATGTGATTCGCAAGGACTTCAGCAGCGACCTCTCCCCTACCAAGCCTGTCCCCACTGGAGAGGGAGTGAAGACATTCAGCTTCCCTGAGACGGTTTTCACAACCGTCACTGCCTACCAGAACCAGCAGATCACTCGACTAAAAATTGACAGAAACCCTTTTGCCAAAGGATTCAGGGACTCAGGGAGGAACAGAACTGGTCTGGAGGCCATAATGGAAACTTACGCTTTCTGGAGACCACCAGTACGGACCCTTACATTTGAGGATTTCACCACCATGCAGAAGCAGCAAGGAGGAAGTACGGGCACGTCTCCAACCACATCCAGCACTGGGACTCCATCGCCCTCGGCCTCCTCtcaccttctctctccctcctgctccCCCCCGACCTTCCACCTGGCACCCAACACCTTCAACGTGGGCTGCCGGGAGAACCAGCTGTGCAACCTCAATCTCTCAGAGTACCCTGCCTGTGCCAGGAGCAACATGGCAGCCCTGCAGGGCTACACCGGCCTGGGTGAAGGCTCATACGGGAGGCTGCAGACTGGAGGGAGCACTGCTGGCCAGCCCTCTGAATCCTTCATGCCCCAGAGGACTTCATCTTTAATCACTGGAATGCAGGCCAATCCAGCTTCCCTGCCCGGCAACAACAAGATGGACACCTACGGCGGCCAGCTGGGTTCTTTCCCCACCTCCCAGCTTCAGTATGTGATGCAGGCAGGAAGTTCcgcctccagctcctcctcttcccaCATGTTCAGTGGAAGTCACATGCAACAGGGATCTTACAATGCCTTCTCCCTTCACAATCCATACAACCTCTATGGATACAATTTCCCTGCCTCCTCGAGACTGGCCACAAGCCCAGAAAAACTGACAGCTTCCCAGAGTAGTCTGCTCTGTTCGTCCTCACCTAATGGCCCCTTCGGAGACAGGCAGTACCTGTCAAATGGCATGGATGGGATGCACATGATTGGCAATCCGTCCCCTGCCCAGCAGACAGCCAATACCTGTGATAGTCGCCAGTATGCAGCTATGCCTGGTTCCTCCTCACAAATGTCAGTGCACATGGTGTAAACTGGATTATACTGCAGCAATTTgacttgtcttgtttttttccccccatttttcATCTTGTAAACCTTGTAATCAAATGAAGGAAATGTGTCATTGAAATATACAACACGTTattggaaatggaaaaggtCTAAACCTTTTCAAGGAACTTTCTCAAAATATGAGCGTTTGAAtgaattaaaagaagaaatcaaagtgttaatttaatatctctgttttaaaaaaaaaaaaaaattggaaagaAGTAAAATGCTGTACTGCTCATCAGCAGTCCACACTGACGTGTACTTTCATTTTTCTACCTTACCTGGAAACACTGAAGGCAGGAGCACTTCCTCCACTTGAAATGTTTCATGAAGAAGGAAGGAACACAAATCATTTAAGGGAGAAAGCAAACAATTTTGGTGCAATAGTGAAAAAAGAACTGCTGAAACTCACCTTGGTTTCAGTTATATTAAACCTTATCTAAAACATTATGTGAACAGTTTCCCTGAGACTCCAGTCCTAAGAACTAAATGGACACTTGACTCTTAAGACGCTCTCAAAGGAAACACGCTAATCATACAAGTTTGGACaaagttctttattttagaCAAACATAAGCTGAGTATTCTTGCTTAGAGACTGAAAGAGGCCTACAGCCTAGGAGAAAACCCTTCTATTAAAAGTGGAAAATACTGTTCATTGACTAATTCAGCGGAAGAGGATGGGAGTGTTCAAAAGCACACGAAGGGGATTATTTGAGACCTgcttaaaaacattgaaaataacctCTAGGACTTTCAGTGCTCTGACTAATTCATCACAGGCTCTGACCTCCATCTTCCCAATACTCCCTTCACCATTTGCATTGTTGaggtgttaaaaaatatatcgtGGTGAGAGCAAAAGGCTTTAAGTGTGCAAATACAAAGTAATAggaaaaataagtattaaaatatgtgttGATGTGTTGAAGATAACTATATTTATGTGCCTAgcattaatacaattacaatgccCCAAGAAGGCCAGTAAGAGGAATGTACAAAAAGACACAATAAAGAGTGAACGAatgaaagggaaagagaaacGGGGTGTTCAATAAAAGGCCGATTGAAGAATCTGTAAATAGAAGTGCAAAGCACAAAAAAGTTCAATAAACATTTACgttcatttacatttgtttcttgGTCTCCATATTGCTTTGGGACAGAGCAGTATCACATAAGTCACAAAAGGCGAATATTTAAACGTACATCTGTGTAAAACATTGGAAACAACAGATTCCTAGAAGATTGGCTTTAAACTGATAAGGACCTGTAATATTAATCCGATGGGAAAGTAATAATGTTAAAGATTAGTTCTGTACTCCATATTTTGGAAATGAAATCATATTGATCTTTAATCAAGATAGCGATGTTCATACAGCAGGTCTACAGTGTTGTTTATGGAGCCTACAGCAGGAATGTTAGGAATgcttattttaaagcagaataGCATTGTTTCAG

Function

symbol description
tbx15 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell fate specification and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including cephalic musculature; head mesenchyme; mesenchyme pectoral fin; mesoderm pectoral fin bud; and pharyngeal arch 1. Orthologous to human TBX15 (T-box transcription factor 15).

NR:

description
PREDICTED: T-box transcription factor TBX15-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K10182 TBX15, TBX14; T-box protein 15

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014535 True 3290 mRNA 0.46 8 16583824 16611661

Neighbor

gene id symbol gene type direction distance location
AMCG00014531 wars2,LOC106531917 coding upstream 5667 16557564 ~ 16578157 (+)
AMCG00014523 NA coding upstream 102268 16473794 ~ 16481556 (+)
AMCG00014522 NA coding upstream 133173 16448663 ~ 16450651 (+)
AMCG00014524 sap18,LOC107597378,LOC107668906,LOC107569214 coding upstream 145087 16437177 ~ 16438737 (+)
AMCG00014517 NA coding upstream 210067 16371753 ~ 16373757 (+)
AMCG00014537 NA coding downstream 80351 16692012 ~ 16719737 (+)
AMCG00014538 NA coding downstream 110537 16722198 ~ 16731869 (+)
AMCG00014536 gdap2,LOC104943794,LOC104954255 coding downstream 125822 16737483 ~ 16765552 (+)
AMCG00014552 NA coding downstream 717252 17328913 ~ 17332815 (+)
AMCG00014560 NA coding downstream 1167904 17779565 ~ 17780081 (+)
G70735 NA non-coding upstream 92706 16490411 ~ 16491118 (+)
G70637 NA non-coding upstream 343486 16237110 ~ 16240338 (+)
G70562 NA non-coding upstream 665203 15918413 ~ 15918621 (+)
G70496 NA non-coding upstream 854907 15727434 ~ 15728917 (+)
G70418 NA non-coding upstream 1058809 15522525 ~ 15525015 (+)
G70776 NA non-coding downstream 119217 16730878 ~ 16733637 (+)
G70835 NA non-coding downstream 417299 17028960 ~ 17097964 (+)
G70846 NA non-coding downstream 520402 17132063 ~ 17173062 (+)
G70865 NA non-coding downstream 638658 17250319 ~ 17253671 (+)
G70883 NA non-coding downstream 704592 17316253 ~ 17317556 (+)
AMCG00014525 NA other upstream 114615 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 444792 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 897925 15675631 ~ 15685899 (+)
AMCG00014470 NA other upstream 1341491 15221914 ~ 15242333 (+)
AMCG00014461 NA other upstream 2226956 14302447 ~ 14356868 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other downstream 753137 17364798 ~ 17487050 (+)
G71004 NA other downstream 1660193 18271854 ~ 18274360 (+)
G71525 NA other downstream 6243681 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 10293216 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 11223842 27835503 ~ 27841871 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_09967529_09989449 TBX15 coding CI01000009 null 9967384 ~ 9989467 (+)