AMCG00014536 (gdap2,LOC104943794,LOC104954255)


Basic Information

Item Value
gene id AMCG00014536
gene name gdap2,LOC104943794,LOC104954255
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16737483 ~ 16765552 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014536
GTTGTTGCGGACACCGAAACCACTGGTATTCTCCCTCGatttaaTGCAGATGCAGCACTTCGGAAACGCACGAAACATCCCGGAAACGACCGAAGTAGGACACCCATTGTGGATTTGAATGCGGCTGTGTCCCATGAACACGCACTGTGCAATGCCTCGGAAGTGATGAATAGATTTCTGTTTGATGTGAATCAGCTGACCGGGAACACCGCAGCGGGCAGGCGGTGGCGAAACATTAAGTGTGTGAAGTGTTGGCCCGGCCTTATGGATCCTCTGGGAGCGCGCTCGCAGTTTGTTGATGCCCTGACGCTGCCCAGTTGGGAGCTGTCCCAGAATGGGGAGAATACGGCAGAATCCTGTGTGACTGACTCTCACAGCAGCCAGGACAGGGATGTCACTTCACCTTTTCCATTCAGAGAAGACCTTAACAGAAAGATTGTGCTCTACACTGGGAATGTGGCTCTCCTGAACTGCACAGCGATTGTCAACACAAGCAATGAAACGCTCATGGATAAAAATCCCATTTCTGACAGCATTCACAGACATGCAGGACCGGAGCTCAGAGATGAGCTGATCAAACTTAAAGGCTGCCGAACAGGTGAAGCTAAGATGACCAAGGGCTTTAACCTGGCGGCAAGGTTCATCATTCACACTGTTGGACCAAAATACAAAGCCAAGTACAGGACAGCGGCCGAGAGCTCGCTCTACAGCTGCTACAGGAATGTGCTGCAGTTGGCCAAGGAGCAGGGTATGGCATCTGTGGCATTTTGTGTCATTAACACATCGAAGAGAGGGTACCCCCTTGAAGATGCCACACACATAGCGTTCAGAACGGTCCGAAGATTTCTGGAGAACCATGGAGAAAGCATTGAGACTGTGGTTTTTGTTGTGACTGATGTAGAAGAGCCAGTCTACCAGAAGCTGCTGCCACTGTATTTTCCGCGGTCAGTGGAAGAAGAGCACAGAAGCCTCCCTCTGCTCCCACCCGACATCGGAAACTCTGAAGGAGAGCCCGTGGTACCAGAGAGGCAGATACGCATTGCGGAGAAGCCAGGCGTCCCTGAAGAGGATTCAGAGGAGGAGACTCTGGACAAGGACCTGTCTTTTGTGGGCTCTCATGCCTTCGCACGAATGGAGGGAGATGTTGACAAGCAGAGGAAGCTCATTTTGCAAGGCCAGATGTCAGAGGCTGCTCTGCAGAAACAGCACCAGCGCAACTATACCAGATGGTTATGTAGAGCGAGAGCAGAAGACCTGTCAGACATTGCTGCCTTAAAGGCATTGTATCAAACGGGGGTGGATATCTGTGGAAGAACAGTTATGGTCATCGTTGGAAGAAATATTCCTGTAACACTAATTGATATGGAAAAGGCTCTGTTGTACTTTATCCATGTGATGGACCACATTGTAGTGAAGGAGTACGTGATGGTGTATTTCCACACACTGACGGGCGAACACAATCATCTGGACTCGGAATTCCTGAAGAAGCTCTATGACATTGTGGATGCCAAACTCCACTTAATGGTTTCAACCTGGTTTTTTACTACTTTCAACGTCTCTGGGCTGAAGGACAAAGTTCACCACGTGGACACCCTGCAGCAGCTGTTCACCTGTGTGGTGCCTGAGCAAATCGATATTCCCCCTTTCGTGCTTGAGTATGATGCCCGGGTGAATGGGCCTTACCATCCCTCCTATTCCTCTGGTCTCTGAAGAACATGGAAGGCTTCTGCATTCAGTGGAAAACCTCTCTCCTGTGACTGAAGGCCCATGATCCGCATTCTCGGATTAGAGAACTTTGCAATGGTCCTATATTCCTTTGTAATTGATTTACAAAGTAATTTGAAGTTGCTAAGCAATCCCAAAGGTGTGTATTCACACCTTGAGCCATAATTTCAGCATCCACAATGCGTGTTAGTTCAGGGAAGAACCACTGATAGGTCTTAACTTTCAGATTGAATCAGTATTTTCGACACCATGCACTTGCAAAGCCTTTCTCTATGCAAAACAGGTAGTATATTTGCTCTCTAACAGTTTGACACTGTAACTATTGAAGGCTCCATCTTTTCCGAGGGATCCTTTCTGCTTTTATAGCACATCTCTCTTGAAAAAGAGACATATTGGACAGCAATCAGTCACTCTTATTTCACTAACTGCATGCATCTGTCAGCTTTCTACCTGGTTTACATATGAAGGTTTGTTCCTTATCTTTGAAGGCGATACGAAGGTAATAACATCCAGTGTATTTAGGCTTGTTCTCATTGTATTATCAGCCATGTGAAGAATAGGATGTATATGGGAGCCTAGaagtaaaaatacagtttaatgtgAAAGGTGAGACCGATAAATATCCACACTTCCAGAAGtgaggtttcttttttcttttcttttttaagaaatggTATGTGTGTATTATGTGGGAACAGCAAAACAGGATAAATTACAAAAGCCTTATGTCCCACAGTTAGTGGTTATAGTCTTTCTTCCTGGGTATCTCTTCCACCTTCGCATGTGTTATAAAGGGGTAAAACATTTGGATATGCTTACCATTGAAAACTAAGGATAATCAAAAAATGCAGCCTTAATACACATTTGCTGTAGAAGCATTcggttattttttcattttagatttacttgttttattgcCTTCCCAGTAGAGGTAGTCCAAACTGCTGTACTGTTTTCTCTGGAGAATTAGTTCAATGACAGCTGTATATCaaatgtttgtgttcattttactAATTATTATGCAAATGAGCAACAAGTTTTCTGTACATGGCATACGTTTATCTGGCTGTGTATATCAGTATGGATTCGTGGCTGTCCATCTGGACTTTCTTTGAACAGCTGTAAGAGCAGTGTGTGGCAGATGTCTGATATTCAGTGTGGTTGCAAACAGGCTAATATTCCTTTTCGGGGTCGGGGGTAGGGGCGGTGATTCATTTTAGGAATACATGAAACTGTTATCGGCAAAGTTCTGAACATTAATGACTCTAATCAGGATGGATTATGGGCCTATTTTGGTATATTGTTATTCTTGCCGTCTTATACAGAACTCACCCTTATTTTTCCTTTGCATGTCCACTACACTCTGCGATTTTGTCTGGTCTTGCACATGCTCCACAAGGGCAGTACTCTGAATATTCAATCTGCATGAATTCCTGAATTTAAATTCGGCTTGCATGTACGCAGCTTGTGCAGATTACTATATTCATAATACTGATGTATTTTACATGTCAcatgtgtaaatgtaattgagatttaaagaaaaataaatctattgaCCAATGTATGAATTGATCCTGACCCTAAAAGGAGAGATTTGTAATGACTCTCTCTCGTTGgttcagaaattacattttaagtctATAAAGGGTCTTTTATAAGACTTTCAAAAGAACGCATATACACTGTACTAGTAATAAAAATGGTGGCGAAAGCACTTGCAGTCTTGAGATCATTAAATATTGTGAGCATAATGGTTGACCTACATAAAACGGaataatcaaaatgcatttttaaagctgAGCAATAGACATTATCAGGTGTGTTTGGTTGAATTTGCAGCCTGCAAAAACACTACCACTCTATAGTATGAGAATTTGTGACTTAAAGATGTACTCTGGAAGTCTGTTATATGAACAACAGCAGcactatttaatttgtaatttgtgttctcTGAATAGGGACATCTTCCCTATGACAGTATGTTATGTATTTAAGATGGTTACTTGGATTGTTTGCTGACATTTTTTAGTGTGTTAATGACAGCTGgttactgttttgtatttttaagtccATTTATTGATACAGTATTTGATGCGTGTAAAAGTGGCCATAATATATTCTGCTAGTTTGGTGCATATGTAGTATTCATCATTATGCAGAGCTTAGAGTGCCAATTCTGATTGTAGAAAACCCTTTACATAGCCCATTGTGGCATCAGTGTTTTATCATGGTTGGTTGACATCATCCTTTTAATGAATGTAAGAAAAAGTATATTGGTGGAATTTTATTCAgccattcagattttttttttctctccattccaTATTGCAGATTGTTTAGTTTGGACAAACAAGGAAGATGTTGGCAAAATTGTGAAAATACACTAAAGCATCGCTTCCCAGCTCTGCACCCTCACCATTAACCCACAATCGCATGTTTCTAtccagaaatgtaatattttcaacTCGATGCTTCCGTATTTATATTCGTACTTCTTGTGGAAGTCTTtctatatatgtaattaaagtaCCTGGCAAACTGGATTACAGTGTGGAGTTTCTCTTTACATTTGATACAAGTCAAGGACATCAAATGTGCCAAATCTGTTTTAGCAATCCATATGCTTGGATTGGAAGTGTGATGGGTATGATGTGATTTGATGGTTTATTTTCCTGCCTCAAAAGCCTTATTGATATCCATAGGCGTTGGTCAAAGGATGAACATTGATAACTAAGCCATACTCCTTTTTATGAAGTATCGGGtacatgttatattttattttcttgaattcACCACACAgttgcagtacagcacagtacagcatgCTTTTCTACAGCACAGAAAAGATAATGAAGCTCAAATGCTAGTGTTAGTTAGcttgaaaaaaatatagaaattgGATATTGAATTGCAACTCAATTTCATATTGCAATACGGATTAAGAAAATGCATGGTGCCATAGGCAGAGCCTCTCGGTACAGCCAGCCTGTCATGACATTGCAGTGAGTTCACATTCCTGTATTGCAGAACAATCTCGTCATTCAATGTCTTTGACATTGTATTTATAGATGGAGAGCCATAAAGTAAAGTGTATTTGGaaacaaattattgttattggcgatctctttacattttcattaagagGATTTGATTATGGCACTCATTTTTAGAAACATCTGGGAAACATCTCAGCCCTCCAAATCCTTGGTTTTCTTTACTGAGTTCTCTGAAGTTAGCTGttctatgcatttaaaaaactaaataaaaaataaataaataagtgagtGTGTGAGGGGGTCCTTCCATTCTTCTCTCAGGTTCTGTATTCTAGAATGGGGGAAAGGCATTGAATATGTAATCAGAACATACACCATTTTTAGAATTGTTCATGTCCTTTCTATACTACACTTAACTACTCAACTTCTGTTTCTAACtagatttttttcattaaagctGAGTAAATAGTTTTaactattttcagtttaattgcaGTGAAGTTACCTGGATATAATTTCTCACCTATTTGAATACaacaaagcaatttttttttttttgtattctagttttttaaataaataaacggaATGTGGCATTGTAAgaagtttttttagttttttgtaataCTTGAAACTTGGGCAGGACTTTGGGGTCTGGCTAGAAACCTGTTCTAGACATCTGTGAACTTCTGTCAAAATTGTCAGCTGACTGCTTTTATTGTTAGCCAGATGAAGCCAGTTATTTTCTACTGTATCTTCACCTGCTGATTTGTCATAACTAGAGCTGCATTTTTCGGTGTCCCCTTACAAATTGTCTCTTGGACTGAAATGTGTGCCATCTGTGCCATAACCTCAGGACAGTGTGTCCCTGGTCAAGCACAGAAAGATGtaaaaccatttttttattctaaatgtattgcaaatgaAATTAagtatgttaattaattaattgcatttattattatttgaattattttgtgcagATGTGAttattggaaagaaaaaaataggtgTGTAATTTTGTGAAATCTGAAATGCTG

Function

symbol description
gdap2 Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 27. Orthologous to human GDAP2 (ganglioside induced differentiation associated protein 2).

NR:

description
PREDICTED: ganglioside-induced differentiation-associated protein 2 isoform X3

GO: NA

KEGG:

id description
K24997 GDAP2; ganglioside-induced differentiation-associated protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014536 True 5761 mRNA 0.40 15 16737483 16765552

Neighbor

gene id symbol gene type direction distance location
AMCG00014538 NA coding upstream 5614 16722198 ~ 16731869 (+)
AMCG00014537 NA coding upstream 17746 16692012 ~ 16719737 (+)
AMCG00014535 tbx15,LOC107712261,LOC107724509 coding upstream 125822 16583824 ~ 16611661 (+)
AMCG00014531 wars2,LOC106531917 coding upstream 159326 16557564 ~ 16578157 (+)
AMCG00014523 NA coding upstream 255927 16473794 ~ 16481556 (+)
AMCG00014552 NA coding downstream 563361 17328913 ~ 17332815 (+)
AMCG00014560 NA coding downstream 1014013 17779565 ~ 17780081 (+)
AMCG00014565 NA coding downstream 1184008 17949560 ~ 18029896 (+)
AMCG00014564 NA coding downstream 1272556 18038108 ~ 18067182 (+)
AMCG00014563 klf5,LOC107757638,LOC102777034 coding downstream 1304982 18070534 ~ 18080340 (+)
G70776 NA non-coding upstream 3846 16730878 ~ 16733637 (+)
G70735 NA non-coding upstream 246365 16490411 ~ 16491118 (+)
G70637 NA non-coding upstream 497145 16237110 ~ 16240338 (+)
G70562 NA non-coding upstream 818862 15918413 ~ 15918621 (+)
G70496 NA non-coding upstream 1008566 15727434 ~ 15728917 (+)
G70835 NA non-coding downstream 263408 17028960 ~ 17097964 (+)
G70846 NA non-coding downstream 366511 17132063 ~ 17173062 (+)
G70865 NA non-coding downstream 484767 17250319 ~ 17253671 (+)
G70883 NA non-coding downstream 550701 17316253 ~ 17317556 (+)
G70897 NA non-coding downstream 583884 17349436 ~ 17350952 (+)
AMCG00014525 NA other upstream 268274 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 598451 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 1051584 15675631 ~ 15685899 (+)
AMCG00014470 NA other upstream 1495150 15221914 ~ 15242333 (+)
AMCG00014461 NA other upstream 2380615 14302447 ~ 14356868 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other downstream 599246 17364798 ~ 17487050 (+)
G71004 NA other downstream 1506302 18271854 ~ 18274360 (+)
G71525 NA other downstream 6089790 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 10139325 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 11069951 27835503 ~ 27841871 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_10103558_10119209 GDAP2 coding CI01000009 null 10103558 ~ 10119220 (+)