AMCG00014545


Basic Information

Item Value
gene id AMCG00014545
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16991169 ~ 17002661 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014545
TCGGGTTCAAATGTCTCTTCCGATTGGATAAAGTAATTTTTTCGAATTACATCGCGCCTGCGCAGTGCTTATAGGACTGTCCGGATGCATGTAGCACAGTAGAAGTGGTAATcattatggaaaataaacaacaatggAAAAAGTAATTTGTGATAGACACGGCAACACATGCTTGCTGAAGACCGGTGTCAGAGAGGGACCGAACAAAGGGAAAAGCTTTTATCTCTGCAGAGCAAAACATGGAGAATCGTGTGACTTTAACAAACCTGCAGACATCCCTCCATCGCACTGCCTGCATCATGAGGATTCTTTAGTTGAGCTCCAGGCCCTTGTGAAACATGAAGACCAGCAGTGCTACAGGTTATTCTTTCGTTGTGTTACGGGAAAGGCCGATGGGAAGAAGTGGTGTGGGAATGTGCCATGGCAGcagaaaaaggaggaaaagagTCGACACCCCTCCAAAGCAGAATTCACCCAGCATCCTCAAGAGAGAAACCCATTCAAGGCCCAGAACAAGCCCGAGAAGCCCTCAGACTGGAAAGTGCTGCGTGAATGTGGCAGTGTGAGTGGAGAGGGTGACAAGGAAAATGGCTCCAGCACCCAATCCAGTGAAGTAAGGAGGGCAAAACAGCTGCCAGCAGGCATGAAGATAAAGTCTAGGTCATCTGATGAGGCTCAGAACTGCTCCAaaacttcaaaagaaaatgtaggaGTTGAGAATAAAACTGCAAGTGGGATTGAACGTCAAGGAGAGCActtaaagaaagagaaaacctCTACCACTGGGGACAGAAACAGAACCGATAAATCTGAGAAACCAAACATGCACTTAAATCTTGCAGCTCAGCAGAACCAGGACAGAGAAAGACAGCCCAAGCACTTGACTGAAGTAAAGAGTAGTAGCCAGGATAGTGAAACCCAAAGACTCAAAGATTCATCAAAGAAAGAACGCAAATCCGATCAGGATAAAGGTTGCAAAAGTGCGTCAGTGAGGAAGGAGCTGGCTTCACAACAGGGAGGAACCAGTGAGGATGAAAGGAAAGGGGAAATCTGTACTTCAGAGGTTAAAGGCATTATCAGCAAAGAGTCTCCAAGGACCAAAGGAGTTCAGCAGGAAGAGGCTGGGAGACTGCAAGGAAAGCCTGTGGAAGACTGTTCTAACGGTAAACCCTGCGCAGGGCAGGCCACGGCCACGGTAAAGCCGGCTGAGGAGAAGGTGGTGGAGAAGGCTGATGACAACGATGAGGTGTTGCTGGTATCTGTACAGCCTGGAAACAAGCGGCCCTCTCCAGTGGCCCCTGTGCAGAAGACTTTAACTGCTTTCGCCGGCTTCCAGTCCGCACCCCGCTTGCAGCCTAGGCCTCCAGACTCCAGGGCTCTGCACAGCGAGCTCTCCGCTCAGCTCAAACAGAAGAAGGCCACACTGTCTTCTGTGAATATTTCGATGCTCCCTGACAAGGGTCAGAGGCTGCTGAATCAGGTAAAGGACTTGGAAGACGCTCTGGAATCTCTGAGCCTCTCTGTGGCCCCTGAGAGTGAAGGCAACAAGCAGGATGCATCGGGCAGTGAAGAGGGTAATCGGGTGCCTGCTCCCAGCCAGTATAACCCATTCGCCCGGTCCAAGGGTACCATTCTGCTGCCTGGGCCTGTGCTTCATCCAGAGTCCCAGCCCAGCAACCTGGGGCTAAACTTTCACAGCGGCCCTTCCTCCAGTCAGGGATACATCCAGATGTATGGAGTGAACTCACAGCAGAATGCCCTGTACGGCGGCCGCATGACCGAAGACAGACTCCTGGTGGTCCGCAACGCCACAGCAGACGCCATCGACCATCTGCACAAGTCTCTGGAGTCCTGCCCCGCCACAGAGAAAGAGGTCGAGGACCCAAAGGGGCTCAAGGCACGTGATGTTTATTATATTGTGGAGGTCCGCTTAATGCCTCATCAGAGGCAGGCCCTGGCGTGGCTTCTGTGGCGGGAGACTCAAAAACCATGTGGAGGAATTCtggCTGATGACATGGGCTTAGGGAAGACCCTGACGATGATTGCCCTGATCCTCGCGCAGAAGAAGAAGACTgataaaaaagacattaaacTGGAGGGATGGATTTCCAGAAATGATTCCGCTCTCGTGGTGTCCCAGGGCACTCTGATCATCTGCCCCGCCTCTCTCATTCACCACTGGAAGAAGGAAATTGAGAGGCACGTCAAGGGTAGCAAACTGAGTGTCTATCTGTACCATGGACCCAACAGACAGAGAAATGCAGAAGTTCTAGCTGAGCATGATGTGGTGGTGACCACATACACCCTGGTGTCAAAGGAGATTCCAGTGGAGAAGGAAGAGGCAGAGAAGCCTTCAAAGGATGAAGAGAAAGTGGGGTCCCATCAGCCACCCCTCTTGCGTGTGGCCTGGTCACGCATCGTGCTGGACGAAGGTCACAACATCAAGAACCCTCGTGTCCAGACCTCCATGGCTGTGTGCAAGCTGCGAGCCGGGGCGCGCTGGGTGGTGACGGGCACTCCGATTCAGAACAACCTGCTAGACATGTACGCTCTGCTGAAGTTTCTCAGGTGCTCCCCCTTTGATGAATACAAGCTGTGGAAGACTCAGGTGGACAATGGCTCcaagaggggaggagagaggctGAACATCCTCACCAAAACCCTTCTGCTGAGGAGAACAAAGGACCAGCTTGACTCCACAGGGAAACCCCTGGTTTCTTTACCTGAGCGTAGTTGTCTGATTCATCGTGTCAAGCTTTCTAAAGATGAACAGTCAGTTTATGATGTACTTTTTGCACAATCCAGATCAACCCTGCAGTCTTACCTTCAGAGACATGAAGGTGGAGAGTCCAAGCAGACTGGAAACACTAAAAATCCCTTCAACAAAGtGGCTCAAGAGTTTGGGACTTGCCAGCCCGGTGCTCTTTCCGGTTCTCAGAGTCGATCTCAGTCCTCAGCCTCCAGCACAGTACATATCCTCTCCCTGCTGCTGCGCCTGCGCCAATGCTGCTGCCATCTGTCTCTGCTTAAAAAGGTTTTGGATCACACAGACCTGCAGAATGAAGGGATAACCCTTTCTCTGGAGGAGCAGCTCAGTGCCATGTCCCTGGCAGAGCCCTCCAGCACTGATCCCAAGTCCACAGTCTCTCTGAACGGGAGCCAGTTCAGGTCGGACCTTTTTGATGACACGTCGGAGAGCACAAAGATCTCTGCAATTCTCACTGCACTGAAAGAAATTAGAAGGATTTCAGACACTCATAAAAGTGTGATTGTGTCCCAGTGGACAAGCATGCTGCGCATTGTGGCCCTTCACCTGACCCGAATGGGACTGTGCTTCGCCACAGTGGACGGCTCTGTCAATCCTAAGCAGCGGATGGACCTGGTGGAGGAATTCAACACCAACCCAAAAGGGCCACAGGTGATGCTGGTGTCCCTGTGTGCTGGAGGCGTTGGCATAAACCTTGTTGGAGGAAACCATCTCTTCCTAATGGACATGCACTGGAACCCTGCACTGGAGGACCAGGCTTGTGACAGGATATACAGAGTGGGTCAGCTGAAGGATGTTACCATACACAGGTTTGTGTGTGAAGGCACAGTGGAGGACAAGATCTCTACTCTtcaggagaagaagaaggagtTGGCTAAGAAAGTGCTCTCGGGCACAGGAGACTCCTTCACCAAGCTCACACTGGCAGACCTCAAGATCATTTTTGGTGTctaataatttaagaaaatggcTGACCCCTTTGCTCTTATGGATGGCTTCCATGACCACATGCCTAAAATGATTCTTCTTCATGACCCAGATAGATTAAAGCAATGTAGTGAGCCTGTCACCTTCCAGACTGTTGCAGTTAACTTGGGTGATGTTTGGCTGTCTTTGTGACAGATGCTCATTCATTGACTTTCCTTCAGACTATAATTGTCacatatgtgtttttgttttgtcagtcaGTGCTTTATAACTGacattaaagtttaaaaaaagcacacaataaataaataatccaaatGGAAACCATGAACATGA

Function

GO: NA

KEGG:

id description
K15173 TTF2; transcription termination factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014545 True 4030 mRNA 0.50 23 16991169 17002661

Neighbor

gene id symbol gene type direction distance location
AMCG00014543 NA coding downstream 13390 16976410 ~ 16977779 (-)
AMCG00014542 NA coding downstream 17386 16966792 ~ 16973783 (-)
AMCG00014544 man1a2,LOC107658234,LOC107712247,LOC107724469,LOC107668846 coding downstream 35428 16826645 ~ 16955741 (-)
AMCG00014541 man1a2,LOC107668846,LOC107658234,LOC107724469,LOC107597367,LOC106582087 coding downstream 176250 16800041 ~ 16814919 (-)
AMCG00014540 fam46c,LOC107658236,LOC107597368,LOC107724489,LOC107668849,LOC107569365 coding downstream 205647 16783077 ~ 16785522 (-)
AMCG00014546 NA coding upstream 29869 17032530 ~ 17035481 (-)
AMCG00014547 NA coding upstream 63008 17065669 ~ 17086786 (-)
AMCG00014548 LOC105904639 coding upstream 117543 17120204 ~ 17126776 (-)
AMCG00014550 NA coding upstream 168169 17170830 ~ 17241074 (-)
AMCG00014549 NA coding upstream 247629 17250290 ~ 17279447 (-)
G70731 NA non-coding downstream 521941 16465779 ~ 16469228 (-)
G70689 NA non-coding downstream 621705 16366124 ~ 16369464 (-)
G70679 NA non-coding downstream 709270 16281685 ~ 16281899 (-)
G70660 NA non-coding downstream 777042 16212544 ~ 16214127 (-)
G70491 pdcl3,LOC106586481,LOC102788355,LOC106582251 non-coding downstream 1287855 15700208 ~ 15703314 (-)
G70876 NA non-coding upstream 281658 17284319 ~ 17284576 (-)
G70898 NA non-coding upstream 346775 17349436 ~ 17350972 (-)
G70954 NA non-coding upstream 1001149 18003810 ~ 18004023 (-)
G71016 NA non-coding upstream 1326536 18329197 ~ 18331100 (-)
G71133 NA non-coding upstream 1661603 18664264 ~ 18664631 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other downstream 253292 16722073 ~ 16737877 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 3857418 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 5323632 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 5854083 11125029 ~ 11137086 (-)
G69537 NA other downstream 6193022 10796716 ~ 10798147 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 444207 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 586606 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 987990 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 2199142 19201803 ~ 19203567 (-)
AMCG00014603 tpt1,LOC106582181 other upstream 2215061 19217722 ~ 19225230 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location