AMCG00014550


Basic Information

Item Value
gene id AMCG00014550
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17170830 ~ 17241074 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014550
TCCACACCGAAGGCTATTTCAAAACTAGGAGGCTCTGTGAAGTTTTAAATGAAGAAGATACAAGACTTGTAAAAGGTAGTTTTATCCTGTCGATATGAATGTGAATATATGACTTCAAAAAGAGAGATTTGCAGGTGGACGACTGCTCTACGTGACAGCTGAAAATTGTATGTCGTCTAGCTGTCAGgaagtctctctctcagacGTGAGGCAGGATGGAGCGGTCACCCTCTCTCGATGGCTGCATGGCTTTTCTGCTGTGCTGCCTTGTTATACTTCTACAATGGGaTTACAGTTTTGCACAAAGATTGGTCCAAGTACAAGATGGTCCATTATACCGAGCCAACGGCTATCCCATCACAATAGCATGCAATGTCAGTGGGTTCAAAGGACCTTCTGAGCAAAATTTTGAGTTTTCTATGTACTTGTCTGCCAACCCCacagctgaaattaaaataatcagtaCGCTGGATCCTTCGACTGCCTATGCCATATATAGGCaaagagttaaaaataaagagatCGAAATTGAGAGAATCACAGGTTCCTCTGTACTATTACACATCAAAAATCTGCAACAGAGTGACCAGGGACAATATGAATGTTCGACTCCAAATACTGATGGAACTTATTTGGGAAGTTACAGCGCCATGACTGATCTTAAAGTCATACAGGACACTCTGACAGCATCCATGAGCACAGGTCCGCTTCGTAAACTGGAAGGAGACCCTCTGCAGCTGGAATGTGAGGTGTCAAGCCAAACCCTGCAGCATACACACATATCTGTCACCTGGTACCTCCGTAAGGCTGGGCAAGATCCACTTCAGATCATTTCTTTAATGAGGGATTTCACCCTGACACCGGGCAGTGAATTTGAGTACAGATATAAGTCGGGACAAATTGGTCTGGATAAAATTGGGATCACAACCTACAGACTGACGATCACTCATCTGCAAGTCGCGGACCAGGGGAATATCTACTGTCAAGCAGGAGAGTGGATTCAGGATCCAGACAAGTCCTGGTTCAAAATCGCTTCCAAAGAAACACAGCCCTCTTCTGTAGAGGTGCAAAAAGTGGACAAAGAAACTGATGATTTTAATGTACGCATTGAGGCTACAGAAGAAGAACTTCAAGAAGGAGAAACTTTAGAGCTAAAATGCATTGTGGAAATTCCAAATATTCTTGACCATTACTTCTCCGTGGCCTGGTTCAAAGACAGCCAGGAAATGGCTCGAATTGGGCCCATGGGTGTACTGACCATTGGAGGTCGctacacagggagagagagtcaaGGAGAGATCAGAGTCTTCAAGAAGAGTGGCAGTGATTACgtgataataattaaacacatcaAGACAAAAGACCAGGGAGCATACCATTGCTCAGTttccaaagaagaaaaaagtccAGGTGGACCTTTTACAACCAAGGAAATGAAAGAATCCAGTCAAGTACAAGTGCAAGTTACTGCTCTCGAGAGCAACTTCAATGTTGCGGTTTCAAATCGCACAATCAACATTGTCGAAGGTGACCATCTTCAGATCAGTTGTAAAGTTGCTGGAATGCAAGGGCAAGTATCTGTTGCTTGGCAGTACAAAAAGGACAATCAAAACCCCTTCAGTGATGTCATCAGCCTAAGCCTGAATGGGGCTCTTGGTGCAGGGGCCCAGTACCGGCAGCGTATTGACAGGGGCGACATTCGCACTGTCAGAATCAATCAGGAGTCATTCGTGCTGGAGATGTCACACTCCCTCCCATCTGATGCAGGCATCTATAGGTGTGTTGTAACAGATTGGATTGCACAGACTGATGGCAACTGGAAAGAAAGAGATAGTAAATCTCAAGAGTCGTCTCTTACAGTTTCACCTCTAGaTTCTGTTATGCGCACTTCTATAAAAAGCCGTCATGCACAAATTGAAGAAGGGAAAGAAATAACGTTGATCTGCTCGGTAAGTGGAACTAAAGTCCCACTATCCACTACATGGAAATTCCAGAAAAATGGATCATCACAACTGCAAGACATAGTGACCCTTCACTACAATGGGGATATCAAGTGGCATAGAGAACTCAACAATTTTGAATTCAAGACCTCAGTGCACAAAGATGACAGGACCTCCTTCTTAAAAGTGTCCAAGGCTAGTATTTTGGAAGCAGGAACATATCAATGTGTTGTGGAAGCATGGATAAGTCAAACAAAACGAGCAAAAAAAGAATCCAATATGTTAGCCATCATTGTCACTAAACCAGGCAGTAAGCTAACTGTTAGGAGTGAGCAACCCGTTTTAGAGCGCAACGTGAATGGGGATGTGGAAATAGCATGTCAAATCCAAGGTGCTACCAATTCTAATTCTCAGTTTGCCGTATCCTGGTATTTCACACCCTCCGAGATGGGGAACACAACTATTCTGAAGATGGACCGTTATCACATTCTAGAGAATGGAGAGATGATGAAAAACAGGAAGCATAAATTCCAACTCATAAGACAATCTGCAGATTCTTACAAACTAGTCATCCTACAAACTGAGTTTGGTGACAGTGGAAAACACTACTGTGTTGTGGAGGAGTGGGTACAAGATCCCAACAACAAGGTCCTGAAGAACAATACCTCTGTCCGCATACCTGAGAGTAATGACTTTATCGTAAACTGCACAATCGACAGTGACATCCAAGCAATGTCACACTTCTCAGTGACCTGGTATTATCAGAATCATGAGGATCCTAAGCTCCCCCTTCTGACGTTCAGTCATGATTCTGTGTTCGAGAATCTGTCACTAAACAAAGAACTCTGGAAGAGAATGCAGTTTTACAGTCCTTCTGCTGGCACTTACAGTTTAGTGATCCGCAACGCGGGCGTTGATGATACAGGAAAGTACTCTTGTAAGGTGGATGAATATGTACTCAACTGCGAAGGTAATATGCAGCCACGCTCCACTGGTGAGTCAGGATTTACAGAAGTTGTTGTACATCATCCAGAGAATAATCTGCATGTGTCTCAGAATGATGCTGTGATTAATTTAAGGGAAGGACAGGGCAGTTTTACAGTCTACTGCAACATAACCACACATTCAAACAACAAGTCTGCATTTGAGGTGACTTGGTTGAAGACTGAAGAAGGAATTACCCATCCCATATTCAAAGCATTGCGCAATTCTACCCTTCAGTTCCTATCTAAAGCCAGAGACCACTTTGTATTCAACAGGCCCTCCACAAACTTGTACAGCCTAACCCTTCCAATGGCTAAAGAAACTGATGCTGGGATCTACTTCTGCAATGTAGAGGAGTGGTTGCTTAACCCAAGGCACAAGTGGTATAAGATTGCGGAGCGTACATCAGGAAACTTAACAGTGTCCATTACAGCAGAAGatgtCAGCACATACTCCACTGTTTGCAGCTCTAAATctctttttgattttgtcttcATCTACCCGTTCATCATCATTGTGCTTCTGATTTGTGTGATCTTCTTTCTGTACTATAAAATGAGGAAGGGTGGAATACACTGCTTGTCCAATACAAACAGACAGAATAAAAGCCTGTGGAAGGAGAAAGACATTCTCCAAAACTTCTCCAGTTCCATGACTGTATGGAAACTGACTTGTGAAGAGACATTTGTAAGAAAAGTCTACTTTTTGTGCTTCCCTACATCCTTCCACAGAATA

Function

GO: NA

KEGG:

id description
K06522 IGSF2_3, CD101; immunoglobulin superfamily, member 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014550 True 3659 mRNA 0.43 12 17170830 17241074

Neighbor

gene id symbol gene type direction distance location
AMCG00014548 LOC105904639 coding downstream 44054 17120204 ~ 17126776 (-)
AMCG00014547 NA coding downstream 84044 17065669 ~ 17086786 (-)
AMCG00014546 NA coding downstream 135349 17032530 ~ 17035481 (-)
AMCG00014545 NA coding downstream 168169 16991169 ~ 17002661 (-)
AMCG00014543 NA coding downstream 193051 16976410 ~ 16977779 (-)
AMCG00014549 NA coding upstream 9216 17250290 ~ 17279447 (-)
AMCG00014551 NA coding upstream 73112 17314186 ~ 17323621 (-)
AMCG00014554 LOC108242195,LOC106919873,LOC106525269,LOC106574724 coding upstream 177383 17418457 ~ 17432186 (-)
AMCG00014556 LOC107569141 coding upstream 243776 17484850 ~ 17500956 (-)
AMCG00014557 NA coding upstream 314593 17555667 ~ 17566646 (-)
G70731 NA non-coding downstream 701602 16465779 ~ 16469228 (-)
G70689 NA non-coding downstream 801366 16366124 ~ 16369464 (-)
G70679 NA non-coding downstream 888931 16281685 ~ 16281899 (-)
G70660 NA non-coding downstream 956703 16212544 ~ 16214127 (-)
G70491 pdcl3,LOC106586481,LOC102788355,LOC106582251 non-coding downstream 1467516 15700208 ~ 15703314 (-)
G70876 NA non-coding upstream 43245 17284319 ~ 17284576 (-)
G70898 NA non-coding upstream 108362 17349436 ~ 17350972 (-)
G70954 NA non-coding upstream 762736 18003810 ~ 18004023 (-)
G71016 NA non-coding upstream 1088123 18329197 ~ 18331100 (-)
G71133 NA non-coding upstream 1423190 18664264 ~ 18664631 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other downstream 432953 16722073 ~ 16737877 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 4037079 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 5503293 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 6033744 11125029 ~ 11137086 (-)
G69537 NA other downstream 6372683 10796716 ~ 10798147 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 205794 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 348193 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 749577 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 1960729 19201803 ~ 19203567 (-)
AMCG00014603 tpt1,LOC106582181 other upstream 1976648 19217722 ~ 19225230 (-)

Expression


Co-expression Network