AMCG00014551


Basic Information

Item Value
gene id AMCG00014551
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17314186 ~ 17323621 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014551
CTATCATAAAACAGCCTTCAATACTTCTGATAAGATCACATTACAGAAACATGGGATATAAAACAGCCAATTTCATCAGTTTAGTGTATTTGCTTACAAGACTACCCTTTTCAGAGCCATCTCCTCAATGTGCTACCTTGGGGAAAGTTTATACACTGTCTCTTGGATATAAACCGGAGAACACAGATGACATAATTTGGAAAGATCAATCACAGAGACTTGTAAGACGTAAAAACATGAAAGTATCTGATCTCCGAGAATATGTAAATATCGACCAAAACGCTTCTCTTCTCCtgaattttttaaaaaaaacagatgaaaaaatatacacagcAGAAGTTTTTAATGAAGCTGGAAAGAGAGTTCATAAAATTAATATACCACTAAAAGTTGTTGAATCAGTATCAAAGCCATACTTGACAATCGACTGCAGTACAAAAACAATATCCTGTGGGGCCAGAAGCATTGATGAAGGGACTCTTGAATtggaattaaatggaaaatctCTGAATATATCCAGTGGAAATGTGACTTACAATGTAAAAGAACAATATGCACATTCTCCTAAGATTACTTGCATTGCAAAGAATTGTGCCAGTGTGGagaaaaatgaaactgaaatgaaatgtgtagtaaATGAAGTACCACCTTCAAATATGCCACCTTCACATCAAAGACAGGCAAAACTGCAACCCCCTCCAAGAACCCGCTCTAAAGCACAGCCACAGAGCAGAGGCCAAACCCCGGCTCTGCCCAAACCCAGAGCCCAGGCTAGGCCCAAGCCTCAGCACAACATCGACCCCCTGTTAGTAGAGGAACAGCCCCCCCCCAGACCAAAACCAAGGTCAAAGTCTGCAAATCCCAACAAGTGTTAGAGGCCAACCCTCTtcctttgtaaaatgtattagtaaTTCAAACAAACAGTAATGTTGATACTCTCCCTGctatttacttttatatttttgtattgccttctttaacatttcatttaaaaaatcaataagaGATTCAATaaggtgttttatttcaaagtttgcCTCCTACcctgaaacaaatatttatttcatgataaatacagcacagttcagtttattataattattatgtagACAGTGTGTTATGCAATGAAACCTTCTTCAAAATTAATCTATGATTAAATTCAATACCTGTGTGTAAAGtagtttttcaaaattaactagatttctgttgttgtttcattttgattatAATGTCCAAGGAAGTCAAATAGAACCAACTGAAAGTGCTTTAGATTGTTTCtggaaaccaaaaaaacattgacctacAACTGACAGGTGATATAAAACTGAAGCTGGACAATTCATGGAAACCAtagaattaatacaaataaacaaaagactATATCAGTAGTGAAATAACTATCTTAGCAGCTCTACTTAATTCACAGATTAAGACAATTACATGTTAATTTACTTATCTATTCTGTTTCCTAGATTTCATGTAAATCTATGTAAATAGTAAATGTTGCAAAACACAGCTTGGAGCAGTGTTTGTATGATTATAattgatatattaatttaatgtttaatctaCCAAATGGATTACTTTacctga

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014551 True 1593 mRNA 0.34 4 17314186 17323621

Neighbor

gene id symbol gene type direction distance location
AMCG00014549 NA coding downstream 34739 17250290 ~ 17279447 (-)
AMCG00014550 NA coding downstream 73112 17170830 ~ 17241074 (-)
AMCG00014548 LOC105904639 coding downstream 187410 17120204 ~ 17126776 (-)
AMCG00014547 NA coding downstream 227400 17065669 ~ 17086786 (-)
AMCG00014546 NA coding downstream 278705 17032530 ~ 17035481 (-)
AMCG00014554 LOC108242195,LOC106919873,LOC106525269,LOC106574724 coding upstream 94836 17418457 ~ 17432186 (-)
AMCG00014556 LOC107569141 coding upstream 161229 17484850 ~ 17500956 (-)
AMCG00014557 NA coding upstream 232046 17555667 ~ 17566646 (-)
AMCG00014558 NA coding upstream 249282 17572903 ~ 17582074 (-)
AMCG00014561 dach1,LOC107668899,LOC108426032 coding upstream 431343 17754964 ~ 17808430 (-)
G70876 NA non-coding downstream 29610 17284319 ~ 17284576 (-)
G70731 NA non-coding downstream 844958 16465779 ~ 16469228 (-)
G70689 NA non-coding downstream 944722 16366124 ~ 16369464 (-)
G70679 NA non-coding downstream 1032287 16281685 ~ 16281899 (-)
G70660 NA non-coding downstream 1100059 16212544 ~ 16214127 (-)
G70898 NA non-coding upstream 25815 17349436 ~ 17350972 (-)
G70954 NA non-coding upstream 680189 18003810 ~ 18004023 (-)
G71016 NA non-coding upstream 1005576 18329197 ~ 18331100 (-)
G71133 NA non-coding upstream 1340643 18664264 ~ 18664631 (-)
G71157 NA non-coding upstream 1345180 18668801 ~ 18669655 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other downstream 576309 16722073 ~ 16737877 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 4180435 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 5646649 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 6177100 11125029 ~ 11137086 (-)
G69537 NA other downstream 6516039 10796716 ~ 10798147 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 123247 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 265646 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 667030 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 1878182 19201803 ~ 19203567 (-)
AMCG00014603 tpt1,LOC106582181 other upstream 1894101 19217722 ~ 19225230 (-)

Expression


Co-expression Network