AMCG00014556 (LOC107569141)


Basic Information

Item Value
gene id AMCG00014556
gene name LOC107569141
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17484850 ~ 17500956 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014556
ATGGAAGGAGGTGATCAGTATAAGTTGGCTGCGACATCGGAGCAGGGGGAGAAGAAgggaaagaaggaaaagaagggAACACATAACACAGATCAAGAAGACCTGAAGAAGGATGTTGATTTGGATGATCACAAGCTCACATTGGATGAACTTAATCAGAAGTATGGCACTGATCTCAGCCGGgGCTTAAGTGCTGCCCGTGCTGCTGAGATCCTAACACGAGATGGCCCCAATGCTCTCAGTCCTCCTCCCACCACCCCAGAATGGGTGAAGTTTTGCAAGCAGATGTTTGGAGGGTTCTGCATGCTTCTCTGGATTGGAGCACTGCTCTGTCTCGGTGCTTACATTATTCAGATTGCCACAGAGGAAGAACCTCCTAGTGACAATttatatttgtgtgtggtacttgttgttgttgttgtcgtcacTGCCTGTTTCTCATACTACCAAGAAGCTAAGAGCTCCAGGATCATGGACTCCTTCAAGAACATGGTCCCTCAGcAAGCTATGGTTATtcgagagggagagaagaaaagcATAAATGCACAGGACGTTGTTGTCGGAGACCTGGTTGAAGTAAAGGGAGGAGACCGAATACCTGCTGATTTGAGAATCATCTCTGCTCAGGGCTGCAAGGTTGACAATTCCTCCCTCACTGGTGAGTCCGAGCCTCAATCCAGATCACCTGAATTTTCCAACGAAAACCCTATTGAGACCAAGAACATTGCCTTTTTTTCAACCAACTGTGTTGAAGGCACTGCTCGTGGCATTGTCATCAACACTGGTGACAGGACTGTGATTGGACGTATTGCTACTCTTGTATCTGGTCTGCAAGTCAGGCAAACTCCTATCTCTATTGAAATTGATCACTTCATCCGTATCATCAGTGCTGTGGCTGTCTTCTTGGGCCTTACCTTCTTCGTCCTGTCGCTCGTCCTTGGCTATACTTGGTTGGATGCTGTCATCTTCCTCATTGGGATCATTGTGGCCAATGTTCCTGAGGGTCTCCTGGCTACCGTCACTGTGTGTCTGACTCTCACAGCAAAGCGTATGGCCCGTAAGAACTGCCTTGTGAAGAATCTGGAAGCTGTGGAGACTCTGGGGTCCACCTCCACCATTTGCTCTGACAAGACTGGAACCCTGACTCAGAACAGAATGACTGTGGCCCATATGTGGTTTGATAACCAGATTCATGAAGCTGACACCACTGAAAACCAGAGCGGCACCTCCTTCAACAAAAGTTCCCCAACCTGGACTGCTCTTGCCCGTGTAGCTGGTATATGCAATCgtgctgtgtttctgtcttcACAAGATGACGTGCCAATTCTTAAGAGAGATGTTGTTGGTGATGCCTCGGAGTCTGCCTTGCTGAAGTGTATTGAGCTGTGCTGTGGATCTGTGAAAGAGTTGAGGGAGCAATACCCTACAGTGGCAGAAATCCCTTTCAACTCCTCCAATAAGTACCAGCTTTCTGTCCACAAGAATGCAAACCCATCTGAAAGCCGATATGTTCTGGTGATGAAGGGAGCCCCGGAGAGAATTCTTGATCGTTGCTCCACCATTCTGATTGAGGGCAAGGAACAGACTTTGGATGATGAGATGAAGGATGCTTTTAATAATGCATACCTTGACCTTGGTGGCCTAGGAGAGAGAGTGCTTGGTCTCTGCCACTATTTGCTCCCTGATGACCAGTTCACAGAAGGATTTAAGTTTGACACAGAGGAGGTGAACTTCCCAACTGAGAATCTCTGCTTTGTTGGCCTGATGTCCCTGATTGACCCCCCTCGTGCAGCTGTGCCTGATGCTGTCGGCAAGTGCAGGAGTGCTGGAATTAAGGTTATCATGGTCACTGGTGACCACCCGATTACAGCCAAGGCTATTGCAAAGGGTGTGGGGATCATCTCTGAGGGCAATGAAACTGTTGAAGATATTGCAGACCGTCTGAAAATCCCTGTTAACGAAGTCAACCCCAGAGATGCCAAGGCCTGTGTCGTTCATGGCAATGACCTGAAGGATATGAGCCCAGAACAGCTGTCAGATATCCTGAGACACCACACTGAGATTGTGTTTGCCAGAACTTCTCCCCAACAGAAGCTAATCATTGTGGAGGGCTGTCAGAATGAGGGTGCTTTTGTAGCTGTGACTGGCGATGGTGTAAATGACTCCCCTGCCCTGAAGAAAGCAGATATTGGTATTGCCATGGGTATTTCAGGCTCAGATGTGTCTAAACAGGCTGCTGACATGATCCTTCTGGATGACAACTTTGCTTCCATCGTGACTGGTGTAGAAGAAGGCCGCCTGATCTTCGATAACCTGAAGAAGTCCATTGCCTACACCCTGACTAGTAAAATTCCAGAGATGACACCCTttcttgcttttgttgttgCCTCCATCCCTCTGCCCCTGGGAATAGTTGCTGTTCTTTGTGTTGACTTGGGTACTGACATGCTTCCAGCTATCTCCCTGGCTTATGAACAAGCAGAGAGTGACATCATGAAGAGACAGCCCAGAAATGCCAAAACAGACAAATTGGTCAATGAAAGGCTGATCAGTATGGCTTATGGTCAAATCGGTATGATTCAAGCCCTTGGAGCATTTTTCACCTATTTCGTTGTCCTGTCTGAGAATGGTTTCCTGCCACTCAAAGTACTTGGCCTCCGTGTTGACTGGGATGATAAATTTTTAAATGAGTTGGAGGACAGCTATGGACAACAGTGGACCTATGAGCAAAGAAAGGTTCTTGAATATACCTGTTACACAGCCTTCTTCATCAGCATTGTGGTTGAGCAGTGGGCTGACTTGATCATCTGTAAGACGAGGAGAAATTCAATCATCCACCAGGGAATGAAGCCAGGCTATTGGTTCTGCGCTTTCCCTTTTGCCATCCTTATCATTGTTTATGATGAAACCAGGAGATTTCTCCTCCGACGCTACCCAGGAGGTTGGGTGGAGAAAGAGACGTACTATTAAACCATCACTGTACATCACACCGTTGCATGCATGGTAGTCTTGCTGATCTGACATTTAACTTAACATCAGATGTGTTTTATGgagaacattcaaaacaatggaGATGGCGAACCAAGACATTATGTGTCTTTGTTCTGGAGCAGGACAAATCAAATTTTATACCCATTTTtaacagtgtaataaaaaaaataacctttCAGTCAAGTCTCATTTCTGGACTCGGTAACATATAATTtcagcaatttattttgttgtcttttatttgCCCATCAAAGCTATGATGAAAGGCCAGAATCCCAggttgtacattgttttttctattaGATTGTACCGTTATGTGTGATCATTCTTGGGATATGGGTGAAGTAGAGAAGTGTACAATCTATCATTTCCCTCCCTGCCTCTTCCccaacacagaaacacaaagttTACAAGGTTTACAAAACAGTTCTTCAACTGCCCATAATCTCATTATGAATTTTATAGCTATGTAATTTAATGAAGATTCTCTATTTTCTGTTAGTGATACTAATGCACTACTAGTAAAAATTAAAGCAATCTCCTTAAAATTTGTTTGATCATGTCTTGATATAATTTAACCCAGAATTACAAGtttgtctttatatatacatattgtatgcCCCTCTTTTAATAGTAGgcctataaataaattaatcgtCATTAATTAAGTGTAGGCTACTCTAGTAAGGAACAGACATGTGAAAGACAAATGTTAACACTGAaggactgagacacagagataggcctgtatttgtctttgtgtaTGGAAGATTTTTGGtttatgcattatattatttgtagaGTGCCTTCTAGTAGATCAGAAGTTTGATATGTTCTCAgatctaaaatctaaaaagtCTCAGTATCTGTGTTATATTTGGCAATTATGACATTGCGGTCAATAGTTATGTAGTCcttctgtaatacattttgattacaTTATGTGTTTGCATCAGCAAAGTCCTAACTAACAGTATGATACAAAAGCAAGAAATGTTTTTCTATAAAGCTCTATTTCGCTTACACTATTGACACTATAGAATATGTTCAATCATGGAAACCTCTCTTAATTATAAGTtaaataggcctatattattttaacaagtttAAACTGCCTATGGGGATTATCTGCATAATGACCACAAAGCTTATTACCTTAACGACTTTAGCATAGTGCCAAGCAGACACCATGAATTGTAGACAGTGTAGCATAAAATTGATAgaaaattcaaattttaataagtATAGAAAGATCACAGTAAActgtaattcatattaattgAAAAGTTATTGGAAAATTGACATTAAAGTATGAAAGATGGTGATGAGATCAGAGATACCACACTTCTCTTGATGAAGAATCAGAGTTTCAgcttattgtatttcattaaaaatgcattgtctCATCAAAATTTCCCATTATAGACCCTGgttgggattaaatcaaaactttgacccacccgctaatcaaaaactacagaactgtactcaattgcggcttcattttcagtaagatgccactttcttctaatcagaaatgtaactgctatgatgtacaacTTCGTAGTTTGAAATTAGCGGGTGGgtccaagttttgatttaatccagcccccgTCTCCAAGCCACgtgtaacattttcacttaaCGAATCTATCTGCAACTTAACCTGTGTGGGTGATGAGGACAGTGAATACAGCTGGGAAATAAATGGACAAGACCAACTGCATATGAATGGAAAGACAATGACCTTTTCAGAAGTCACTGACCTTGATACAGTATACATCTGCAAAGTCAAAAACTCCAAGAGAGTTACCCCATTGTAGCAAAAAAATGCTTTCCCGCAGGACCAAAGACCAAATATTTGATTGTAAATCAGTAACCACAACTACTGTTGTGAATAACTGTGATCATCATGTGGATTTCAGTTAAATATGTAGTTGTATAATGATATATTGGAATAAAACCTTATTACAATgcatattatgattattatgatgatgattattattattagtagtagtagtagtagtaatatttgTTCTCCAAAGATACTCAGCAGAAATTAATTTGCAGTGcaaacaatatacactcacctaaaggattattaggaacaccatactaatactgt

Function

NR:

description
PREDICTED: sodium/potassium-transporting ATPase subunit alpha-1 isoform X2

GO:

id name namespace
GO:0006754 ATP biosynthetic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function

KEGG:

id description
K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014556 True 5119 mRNA 0.42 22 17484850 17500956

Neighbor

gene id symbol gene type direction distance location
AMCG00014554 LOC108242195,LOC106919873,LOC106525269,LOC106574724 coding downstream 52664 17418457 ~ 17432186 (-)
AMCG00014551 NA coding downstream 161229 17314186 ~ 17323621 (-)
AMCG00014549 NA coding downstream 205403 17250290 ~ 17279447 (-)
AMCG00014550 NA coding downstream 243776 17170830 ~ 17241074 (-)
AMCG00014548 LOC105904639 coding downstream 358074 17120204 ~ 17126776 (-)
AMCG00014557 NA coding upstream 54711 17555667 ~ 17566646 (-)
AMCG00014558 NA coding upstream 71947 17572903 ~ 17582074 (-)
AMCG00014561 dach1,LOC107668899,LOC108426032 coding upstream 254008 17754964 ~ 17808430 (-)
AMCG00014562 dach1,LOC105030421,LOC106586049 coding upstream 434210 17935166 ~ 17935714 (-)
AMCG00014566 NA coding upstream 528885 18029841 ~ 18037569 (-)
G70898 NA non-coding downstream 133878 17349436 ~ 17350972 (-)
G70876 NA non-coding downstream 200274 17284319 ~ 17284576 (-)
G70731 NA non-coding downstream 1015622 16465779 ~ 16469228 (-)
G70689 NA non-coding downstream 1115386 16366124 ~ 16369464 (-)
G70679 NA non-coding downstream 1202951 16281685 ~ 16281899 (-)
G70954 NA non-coding upstream 502854 18003810 ~ 18004023 (-)
G71016 NA non-coding upstream 828241 18329197 ~ 18331100 (-)
G71133 NA non-coding upstream 1163308 18664264 ~ 18664631 (-)
G71157 NA non-coding upstream 1167845 18668801 ~ 18669655 (-)
G71160 NA non-coding upstream 1185542 18686498 ~ 18687346 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other downstream 22560 17446868 ~ 17462290 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other downstream 746973 16722073 ~ 16737877 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 4351099 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 5817313 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 6347764 11125029 ~ 11137086 (-)
AMCG00014559 NA other upstream 88311 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 489695 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 1700847 19201803 ~ 19203567 (-)
AMCG00014603 tpt1,LOC106582181 other upstream 1716766 19217722 ~ 19225230 (-)
AMCG00014630 LOC107672672 other upstream 4724968 22225924 ~ 22244915 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000299_04645836_04651938 ATP1A1A.4, ATP1A1B, ATP1A1, ATP1A1A.1 coding CI01000299 null 4645639 ~ 4651938 (-)