AMCG00014559



Basic Information


Item Value
gene id AMCG00014559
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17589267 ~ 17621151 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00014559
CTGACAGCGGCCAGTCGTCCCCTGACGCCCCTCAGCGATGTAGAGTCGGGGAGTTCGGAAGAGTTTTATCAGTCTTTACATCATGCCGAGCAGACCTTCAGGAAAATGGAGAACTACTTAAAGCAGCAACAGCTCTGTGATGTGATATTGATCGCTGGAAATCGCAAGATACCTGCTCACAGGATTGTTCTTAGTGCAGTGTCAGACTACTTTGCTGCCATGTTCACAAGTGATGTTTGTGAAGCAAAACAAGAGGAAATCAAAATGGAAGGGATTGACCCAAATGCACTCTGGGATTTGGTGCAGTTTGCATACACAGgCTGCCTAGAGCTTAAGGAAGAAACTATTGAAAATCTTTTGGCAGCTGCCTGTCTGCTGCAGCTCTCACAGGTAGTTGATGTCTGCTGCCACTTCCTAATGAAGCTTTTGCATCCTTCCAACTGCCTGGGAATCCGCGCTTTTGCTGATGCTCAGGGCTGCATTGAACTTATGAAGGTGGCACACAGCTACAGCATGGAAAATATTATGGAGGTGATAAGAAATCAGGAATTTTTGCTGCTTTCTGCTGATGAAATTCTGCAACTTCTTGCCAGCGATGATGTTAACGTTCCTGATGAGGAAACGATATTTCATGCACTGATGATGTGGGTGAAACATGATACACAGAGGTGTAAAGACTTAAGTATGCTTCTTGCCTACATTAGACTTCCTCTTCTTCCTGCACAGCTTCTGGCAGATCTAGAGAACAATGCACTCTTCAAGGATGATCTTGAGTGTCAAAAGCTGATTCTTGAAGCGATGAAGTATCATCTTCTGCCAGAAAGGAGACTGTTGATGCAAAGCCCGAGGACTAAACCCAGGAAGTCTACAGTTGGAGTGCTATATGCAGTTGGAGGGATGGATAATAGCAAAGCTGGAATTATGAATGGTAGGAGACTGCAGTTTGGAGTAGCTGTCATCGAAGAGAAGCTGTATGTTATTGGTGGGAGAGATGGCTTGAAGACTTTAAACACAGTGGAGTGTTACAACCTGAGATCAAATACATGGACCATCGTACCCCCAATGTCCACTCATAGACATGGGCTTGGTCCAATCTATGCGGTTGGAGGTCATGATGGCTGGAGCTACTTGAACTCTGTAGAAAGGTGGGATCCTCAAAGTCAGCAGTGGACATTTGTTGCAAGTATGTCCACGGCTAGAAGCACTGTTGGCGTGGCATCTTTAAATGGAAAGTTGTATGCAGTTGGTGGCCGCGATGGGAGTTCATGCCTTAGTTCAATGGAGTGCTACGACCCTCACACTAACAAGTGGAACGTCTGTTCACCGATGTCCAAAAGAAGAGGAGGTGTCGGAGTTTCGACGTGCGATGGCTTTCTGTATGCTGTTGGGGGGCACGATGCCCCTGCTTCTAATCAGAGTTCTCATCTCTCCGACTGTGTGGAAAGATATGACCCAAAAACAGACACATGGACTACTGTGGCACCGTTAAGCCTGCCTCGTGATGCTGTTGGAGTTTGTCTCCTGGGAGATAAGTTGTATGCAGTCGGTGGCTATGATGGGCAAACATACTTGCAAACAATGGAATGTTATGATCCCCAAACAAATGAATGGACAAAGATGGCATCACTGAACATTGGAAGAGCCGGTGCCTGCGTTGTTGTTATTAAGCAGCCT
>TU88648
TTTGCATCCTTCCAACTGCCTGGGAATCCGCGCTTTTGCTGATGCTCAGGGCTGCATTGAACTTATGAAGGTGGCACACAGCTACAGCATGGAAAATATTATGGAGGTGATAAGAAATCAGGAATTTTTGCTGCTTTCTGCTGATGAAATTCTGCAACTTCTTGCCAGCGATGATGTTAACGTTCCTGATGAGGAAACGATATTTCATGCACTGATGATGTGGGTGAAACATGATACACAGAGGTGTAAAGACTTAAGTATGCTTCTTGCCTACATTAGACTTCCTCTTCTTCCTGCACAGCTTCTGGCAGATCTAGAGAACAATGCACTCTTCAAG

Function


GO: NA

KEGG:

id description
K10442 KLHL1_4_5; kelch-like protein 1/4/5

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00014559 True 1674 mRNA 0.46 10 17589267 17621151
TU88648 False 337 lncRNA 0.43 3 17600461 17615905

Neighbor


gene id symbol gene type direction distance location
AMCG00014558 NA coding downstream 7193 17572903 ~ 17582074 (-)
AMCG00014557 NA coding downstream 22621 17555667 ~ 17566646 (-)
AMCG00014556 LOC107569141 coding downstream 88311 17484850 ~ 17500956 (-)
AMCG00014554 LOC108242195,LOC106919873,LOC106525269,LOC106574724 coding downstream 157081 17418457 ~ 17432186 (-)
AMCG00014551 NA coding downstream 265646 17314186 ~ 17323621 (-)
AMCG00014561 dach1,LOC107668899,LOC108426032 coding upstream 133813 17754964 ~ 17808430 (-)
AMCG00014562 dach1,LOC105030421,LOC106586049 coding upstream 314015 17935166 ~ 17935714 (-)
AMCG00014566 NA coding upstream 408690 18029841 ~ 18037569 (-)
AMCG00014568 LOC104962236,LOC106536821 coding upstream 493860 18115011 ~ 18179286 (-)
AMCG00014571 NA coding upstream 642804 18263955 ~ 18291505 (-)
G70898 NA non-coding downstream 238295 17349436 ~ 17350972 (-)
G70876 NA non-coding downstream 304691 17284319 ~ 17284576 (-)
G70731 NA non-coding downstream 1120039 16465779 ~ 16469228 (-)
G70689 NA non-coding downstream 1219803 16366124 ~ 16369464 (-)
G70679 NA non-coding downstream 1307368 16281685 ~ 16281899 (-)
G70954 NA non-coding upstream 382659 18003810 ~ 18004023 (-)
G71016 NA non-coding upstream 708046 18329197 ~ 18331100 (-)
G71133 NA non-coding upstream 1043113 18664264 ~ 18664631 (-)
G71157 NA non-coding upstream 1047650 18668801 ~ 18669655 (-)
G71160 NA non-coding upstream 1065347 18686498 ~ 18687346 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other downstream 126977 17446868 ~ 17462290 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other downstream 851390 16722073 ~ 16737877 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 4455516 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 5921730 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 6452181 11125029 ~ 11137086 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 369500 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 1580652 19201803 ~ 19203567 (-)
AMCG00014603 tpt1,LOC106582181 other upstream 1596571 19217722 ~ 19225230 (-)
AMCG00014630 LOC107672672 other upstream 4604773 22225924 ~ 22244915 (-)
AMCG00014693 NA other upstream 9664269 27285420 ~ 27304597 (-)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_15794752_15824681 KLHL4 coding CI01000000 null 15794665 ~ 15825004 (-)