AMCG00014561 (dach1,LOC107668899,LOC108426032)


Basic Information

Item Value
gene id AMCG00014561
gene name dach1,LOC107668899,LOC108426032
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17754964 ~ 17808430 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014561
AGCAGTGATGTTTCCTGGGATAAAGAGAAACTCCAGTCTCCTAATGCACAAGGATCACAGGCCTCAGTTACTCACCCCAGCCTACCTGGACAGCATAACCTTTCAGTTAGTCACCCCCTTAATCCTCTCCAGCAGAACCACCTTCTACCCAATGGTTTGGAACTCCCCTTCATGATGATGCCCCACCCCCTGATCCCTGTCAGTCTACCTCCTGCATCAGTTACCATGGCAATGAGTCAAATGAACCACCTCAGCACCATTGCAAACATGGCTGCCGCCGCCCAGGTCCAGAGTCCTCCCTCCAGAGTGGAGACgAACGTGTACCAGACAGCCCATCTCCTGCTCCATCCCTTGAAGATGGGAGAAGACCGGGGAGCCACCCTTCCTCTCACCGGAGCAGCAGTGTGTCGAGCTCTCCCGCACGGACTGAAAGCTCTTCAGACAGAATCCGTCTTGTATGGTGAAAACCCCAAAAGAGCCAGAGTTAAGGTTAAAGAGAAGGCAGGTGTCCCCGGCAATCTGGGTTGCCCTCATAAGAGATCAGACCTGGACCTCTTTGGATCTTCTGTGAAAAGGTTTCAGAGAAATGAGACTCCACTTTGTACTCCAACTGCAAGAGACAGTTTTGAGAAGCTCTCCCTGACAGGACAGCCGTTACCTCCCGGATTCGCATCTCCTTTCCTCTTTCCTGATGGGCTATCCTCAATAGAGACACTTCTTACTAATATACAgGTTGCCATTGACAATGCGAGAGCCCAGGAGAAGCAGGTCCAGATGGAGAAAACCGAGCTGAAGATGGAGCTGTTCAGGGAACGGGAGCTCAGAGAAACACTGGAGAAGCAGCTGGCCGTGGAGCAGAAAAACAGAGCAATAATTCAAAAGCGGttaaagaaggagaagaaggccAAGAGGAAATTACAGGAAGCACTTGAATATGAAACCAAAAGGCGAGAACAAGCAGAGCAGACATTGAAACAGGCAACCTCCACAGACAGCCTCAGGACCCTTAACGATTCATTGACCCAGGAGATGGAGACTGACCGCAATAGTGGCAGAACAGATGCTGAAAGGACAATACAAGtagGA

Function

symbol description
dach1 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of cell migration and negative regulation of cellular macromolecule biosynthetic process. Predicted to be located in cytoplasm. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus.

NR:

description
PREDICTED: dachshund homolog 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014561 True 1086 mRNA 0.51 10 17754964 17808430

Neighbor

gene id symbol gene type direction distance location
AMCG00014558 NA coding downstream 172890 17572903 ~ 17582074 (-)
AMCG00014557 NA coding downstream 188318 17555667 ~ 17566646 (-)
AMCG00014556 LOC107569141 coding downstream 254008 17484850 ~ 17500956 (-)
AMCG00014554 LOC108242195,LOC106919873,LOC106525269,LOC106574724 coding downstream 322778 17418457 ~ 17432186 (-)
AMCG00014551 NA coding downstream 431343 17314186 ~ 17323621 (-)
AMCG00014562 dach1,LOC105030421,LOC106586049 coding upstream 126736 17935166 ~ 17935714 (-)
AMCG00014566 NA coding upstream 221411 18029841 ~ 18037569 (-)
AMCG00014568 LOC104962236,LOC106536821 coding upstream 306581 18115011 ~ 18179286 (-)
AMCG00014571 NA coding upstream 455525 18263955 ~ 18291505 (-)
AMCG00014572 LOC107655530,LOC107720111,LOC107668890 coding upstream 508424 18316854 ~ 18317264 (-)
G70898 NA non-coding downstream 403992 17349436 ~ 17350972 (-)
G70876 NA non-coding downstream 470388 17284319 ~ 17284576 (-)
G70731 NA non-coding downstream 1285736 16465779 ~ 16469228 (-)
G70689 NA non-coding downstream 1385500 16366124 ~ 16369464 (-)
G70679 NA non-coding downstream 1473065 16281685 ~ 16281899 (-)
G70954 NA non-coding upstream 195380 18003810 ~ 18004023 (-)
G71016 NA non-coding upstream 520767 18329197 ~ 18331100 (-)
G71133 NA non-coding upstream 855834 18664264 ~ 18664631 (-)
G71157 NA non-coding upstream 860371 18668801 ~ 18669655 (-)
G71160 NA non-coding upstream 878068 18686498 ~ 18687346 (-)
AMCG00014559 NA other downstream 133813 17589267 ~ 17621151 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other downstream 292674 17446868 ~ 17462290 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other downstream 1017087 16722073 ~ 16737877 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 4621213 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 6087427 11660011 ~ 11667537 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 182221 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 1393373 19201803 ~ 19203567 (-)
AMCG00014603 tpt1,LOC106582181 other upstream 1409292 19217722 ~ 19225230 (-)
AMCG00014630 LOC107672672 other upstream 4417494 22225924 ~ 22244915 (-)
AMCG00014693 NA other upstream 9476990 27285420 ~ 27304597 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_01183737_01206031 NA coding CI01000009 null 1182091 ~ 1206857 (+)