AMCG00014562 (dach1,LOC105030421,LOC106586049)


Basic Information

Item Value
gene id AMCG00014562
gene name dach1,LOC105030421,LOC106586049
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17935166 ~ 17935714 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014562
ATGGCCGTACCGGCTGCTCTGCTCCCCACGACCCCGCTGGTCCCTCCACCTCCGATCTCAACTTCTTCAGCGACCACCTCCTCCTCGCCCTCGAccacctcctctccctctccttccgtCGCCCCGTCGGGACCCAACCTGTTTCGGTCGGAGCCGATCAGCACCACCACCAGCCCGGGCATCCCAGCCGGCAACCTGCCCGGCAAGCCCGTGTACTCGACTCCGTCTCCGGTGGAGAACACGCCGCAGAATAACGAGTGTAAGATGGTGGATTTGAGGGGCGCCAAGGTGGCTTCTTTCACGGTGGACGGTTGCGAGCTGATCTGTCTCCCCCAGGCGTTTGATCTCTTTCTGAAGCACTTGGTCGGGGGGCTGCACACCGTGTACACCAAGCTGAAGCGGCTGGAGATCACGCCGGTGGTGTGCAATGTGGAGCAGGTCCGCATCCTGAGGGGACTCGGGGCCATCCAGCCAGGAGTGAACCGCTGCAAACTCATCTCCAGGAAGGACTTCGAGACCCTGTACAACGACTGCACCAACGCCAGGTGA

Function

symbol description
dach1 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of cell migration and negative regulation of cellular macromolecule biosynthetic process. Predicted to be located in cytoplasm. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus.

NR:

description
PREDICTED: dachshund homolog 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014562 True 549 mRNA 0.63 1 17935166 17935714

Neighbor

gene id symbol gene type direction distance location
AMCG00014561 dach1,LOC107668899,LOC108426032 coding downstream 126736 17754964 ~ 17808430 (-)
AMCG00014558 NA coding downstream 353092 17572903 ~ 17582074 (-)
AMCG00014557 NA coding downstream 368520 17555667 ~ 17566646 (-)
AMCG00014556 LOC107569141 coding downstream 434210 17484850 ~ 17500956 (-)
AMCG00014554 LOC108242195,LOC106919873,LOC106525269,LOC106574724 coding downstream 502980 17418457 ~ 17432186 (-)
AMCG00014566 NA coding upstream 94127 18029841 ~ 18037569 (-)
AMCG00014568 LOC104962236,LOC106536821 coding upstream 179297 18115011 ~ 18179286 (-)
AMCG00014571 NA coding upstream 328241 18263955 ~ 18291505 (-)
AMCG00014572 LOC107655530,LOC107720111,LOC107668890 coding upstream 381140 18316854 ~ 18317264 (-)
AMCG00014570 NA coding upstream 382371 18318085 ~ 18323699 (-)
G70898 NA non-coding downstream 584194 17349436 ~ 17350972 (-)
G70876 NA non-coding downstream 650590 17284319 ~ 17284576 (-)
G70731 NA non-coding downstream 1465938 16465779 ~ 16469228 (-)
G70689 NA non-coding downstream 1565702 16366124 ~ 16369464 (-)
G70679 NA non-coding downstream 1653267 16281685 ~ 16281899 (-)
G70954 NA non-coding upstream 68096 18003810 ~ 18004023 (-)
G71016 NA non-coding upstream 393483 18329197 ~ 18331100 (-)
G71133 NA non-coding upstream 728550 18664264 ~ 18664631 (-)
G71157 NA non-coding upstream 733087 18668801 ~ 18669655 (-)
G71160 NA non-coding upstream 750784 18686498 ~ 18687346 (-)
AMCG00014559 NA other downstream 314015 17589267 ~ 17621151 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other downstream 472876 17446868 ~ 17462290 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other downstream 1197289 16722073 ~ 16737877 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 4801415 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 6267629 11660011 ~ 11667537 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 54937 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 1266089 19201803 ~ 19203567 (-)
AMCG00014603 tpt1,LOC106582181 other upstream 1282008 19217722 ~ 19225230 (-)
AMCG00014630 LOC107672672 other upstream 4290210 22225924 ~ 22244915 (-)
AMCG00014693 NA other upstream 9349706 27285420 ~ 27304597 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037234 dachd coding NC_007120.7 CM002893.2 30820290 ~ 31062704 (+)
grasscarp (Ctenopharyngodon idella) CI01000009_01110684_01111118 NA coding CI01000009 null 1110684 ~ 1111601 (+)
bowfin (Amia calva) G83602 NA non-coding CM030130.1 CM030130.1 3734677 ~ 3735207 (-)