AMCG00014564


Basic Information

Item Value
gene id AMCG00014564
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18038108 ~ 18067182 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014564
ATCGCACGGTTGGTGCCGCCCGTGTTTGCGACGTCCGTTTCCAAGATCCCAACTGTGTTGTTATTATCCGGCGGTTTCTAAGGGGGCCGGCGCGGGACATTTCAATTTTGAAGTTAACTATCTTTAAAAATAGGGTTCGTGGCAATAATAACATAACAAGCAGCCTGTAGCTTGAGACCTACACGTTGGTGATACTTTACAGCACCTGACAATGCCCCCTAAAAGGCATAAGGATCCCAAGGTCAATATTTCCAGCTCCTTGGAGTCGGAAGACCTGAGCTTGGAAACCACAGTTCCCACTGAGGACATCTCCTCGTCCTCGGACAGAGAGGGCACCACAAAAGTCACCAGGCAGCTGATTGAGAGGAAGGAGCTGCTGCACAGTCTTCAGCTGCTCAAGATTGAGCTGTCACAGAAAACGCTCATCATTGACAACCTGAAGGCTGAGTATCTTACCAAGAtcgaggagctggaggagaagcTGAATGATGCTCTTCACCAGAAGCAGCTGCTGGCGTTACGGCTGGACAGCCAACTCAAACTGCAGCAGGAGGAAACCAGGAAGCAACAAGCTTTCCGGAAACAGGAAATGGACACTATTCTGTTGCGGCAGAAGCAGCTGGAGGAGACCAACCTGCAGCTCCGTGAAAAGGCGGGGGATATACGACGCAGTCTGCGGGACTTGGAGCTCACTGAGGAAAGATACTCTGAGCTGAAAGAGCTCCCGGAGGACCAGCTCTCAATCCCAGAATACGTTTCTGTGCGATTCTATGAAATGGTTAATCCATGGATAACAGAGGTGAAGGAACTGCGGGTAAAGAAGCGCAGCCTGTCTGAGGACTTGGAGAATCAAAGACGTCAGCTAAAATCAATAATGGAAGGTTATGAAGAAGAAAGACGAATGCGTTCAGAATTAGAAATCAGGAGTCAGCGACTAACTCTGGAGTTAGCAGACACAAAACAGCTCATACAGGAAGGGGATTACAAACGAGAAAATTATGACAAAGTGAAACGAGAAAGAGACAACCTTGAACATGAGATCTCTGACTTAAGAAAACGCTTTGAAATACTTGATGttgcacacaaagcacaaacaaaagagaGGAATGATCTGGGCAAAGAGGTGGCAGCGCTGCAACAGTCCTCCACGTTACTTCAGAAGGATAAAGAGTATTTAAATCGGCAGAACCTTGAGCTCAGTGTCCGCTGTGCCCACGAAGAAGATCGTATGGAGAGACTTCAAATTCAGCttgaagaaacaaagaaagccCGTGAAGaagcatatgaaaaatatgttgCTTCAAGaGATCATTACAAGACAGAATATGAAAACAAGCTACGTGATGAGATAGAACAAATCAGAATGAAAACTAATCAAGAAATTGAGAGTCTTCGCAGAACTTCTAAGGAGATGTATGAACGGGAAAACAGAAACCTTCGTGAAACAAGAGAGAATTCCATTGCCGAGAAAGAAAGAGCTGTTCAAGCAGAGAAGGATGCACTATCAAAATACGACCAGCTTTTGGAACAGTTCAGGCAGCTCCAGCTTGGGATGGACAGCCGAGTGGCTGAGTTGCTAAATCAAGTGAAACTGAAATCCTTTGAAGTGGAGCGTGCTCAGATGATTCAGGAGGAAACTGCCAGGAATCTCAGCCAGTGCCAGATAGAATGTGAGAAGCATCAAAAAAAGCTAGAGGCAAGTCACCCATTTATAGTCTTGACAAAGGAGTTTTATGGCCTTCAAACATCATCAGAGAAACGTATTACTGAGCTGCAAGCACAGAATTCAGAGTACCAAGCCCGCCTGGAAACCTATGAAAGATTAGAACAAGAGCTTGATGATGTCACCATGCAAGCTGCAGAAATGGAAAATGAAGATGAGGCAGAGAGAGTTCTTTTTTCATATGGCTATGGAGCAAATGTTCCTACAACAGCTAAACGACGCCTAAAAcaaagTGTTCACCTGGCCAGGAGATTACTACAACTTGAGAAACAGAACACCTTACTGAGAAGAGACCTGGAACGAAAGTCGACTCACGTTGAACAGGTCTCCAAAGAGCTGGACAGAGCCAATTACCTCATTAACCAGGCACAGCAGCCATATAGCTACCTGATAGAGACAGTTCGCCAGAGGGACACACAAATCCTCTCGCTGAAAGAATGCGTCTCACAGCTGGAGGAGGATGTTCGAACactaaagaaagagaaaacggCTCTACAGCATGTCAAGAATAACATGGCGGCAGATTTAGAAAGACTTCTAAATCATCGTGAGGAGTTATCTGTAATGAAGCAAGTTCTGATTAATATGCACACAAGGCACTATGGTGATGGGTTACCTCACCCTCGAAATGAAGCACCGAGTGGAACAGCAGTGTACGGGCCGAGAGGCTCGACTAACACAGAGGAGGAGAATAATCCCAAACCCAAACCAACACTGTTTACAAAAAAAGAGGCTCCTGAATGGTATAAGAAACTGAAGCATAAAAAATAAGTGacaagtaaaaatgtatttactaatcatatagactttttttttgtaagataaTGGTCTGAATTAATGTGCATAAATGTTtgtcaaactttttattttgtgctaaatatttgtgaaaat

Function

GO: NA

KEGG:

id description
K16538 PIBF1, CEP90; progesterone-induced-blocking factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014564 True 2614 mRNA 0.44 18 18038108 18067182

Neighbor

gene id symbol gene type direction distance location
AMCG00014565 NA coding upstream 8212 17949560 ~ 18029896 (+)
AMCG00014560 NA coding upstream 258027 17779565 ~ 17780081 (+)
AMCG00014552 NA coding upstream 705293 17328913 ~ 17332815 (+)
AMCG00014536 gdap2,LOC104943794,LOC104954255 coding upstream 1272556 16737483 ~ 16765552 (+)
AMCG00014538 NA coding upstream 1306239 16722198 ~ 16731869 (+)
AMCG00014563 klf5,LOC107757638,LOC102777034 coding downstream 3352 18070534 ~ 18080340 (+)
AMCG00014569 NA coding downstream 257088 18324270 ~ 18332414 (+)
AMCG00014574 NA coding downstream 307462 18374644 ~ 18395600 (+)
AMCG00014573 NA coding downstream 403369 18470551 ~ 18475184 (+)
AMCG00014575 NA coding downstream 411227 18478409 ~ 18480032 (+)
G70938 LOC107575789,LOC100846954 non-coding upstream 387106 17650771 ~ 17651002 (+)
G70908 NA non-coding upstream 547501 17489826 ~ 17490607 (+)
G70897 NA non-coding upstream 687156 17349436 ~ 17350952 (+)
G70883 NA non-coding upstream 720552 17316253 ~ 17317556 (+)
G70865 NA non-coding upstream 784437 17250319 ~ 17253671 (+)
G71036 kctd12 non-coding downstream 398037 18465219 ~ 18468335 (+)
G71038 NA non-coding downstream 409861 18477043 ~ 18478028 (+)
G71136 NA non-coding downstream 621366 18688548 ~ 18692633 (+)
G71183 NA non-coding downstream 834043 18901225 ~ 18902161 (+)
G71237 NA non-coding downstream 980776 19047958 ~ 19048172 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 551058 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 1568899 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 1899076 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 2352209 15675631 ~ 15685899 (+)
AMCG00014470 NA other upstream 2795775 15221914 ~ 15242333 (+)
G71004 NA other downstream 204672 18271854 ~ 18274360 (+)
G71525 NA other downstream 4788160 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 8837695 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 9768321 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 9801521 27868703 ~ 27879800 (+)

Expression


Co-expression Network