AMCG00014568 (LOC104962236,LOC106536821)


Basic Information

Item Value
gene id AMCG00014568
gene name LOC104962236,LOC106536821
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18115011 ~ 18179286 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014568
ATGAGGAGCACAGGCGCCATTGAGAACACAATGTTAATGCTTGACGGGATGCCGGCAGTCAGAGTCAAAGCCGAGCCTTTGGAATCTGAACAAGGGTCTCCCAAAGTACACCGCTACCCAGACATGGAAGCAGTTCCGCTTTTGCTCAGTAAAGTGAAACCTGAGCCTCCTGAGGACTTGCTATCAACTGACCAGTTTCAAACGCAGACTGAGCCTGTAGACTTATCAATAAACAAAGCCAGGACCTCCCCGATGGCTGTGCTATCAATGCAGTCGTCGCCCGTTTCCACTGTGACGTCGGCCTTTTCCCCGTCGtcgtcgtcctcctcctcctcgtcctcctcctcacGGCACACCTCCTCGCCCACCGTCATCTCCTCCGTGTCCTCAGCCTCGTCTACCGGCATGCCCACAGTGTTAACACCTGGCCCTATGGTGACCTCCCCCTCAGGAGTACGGGGCCAGCAATTTTTGCACATCATCCACCCCGTGCCACCTTCCAGCCCCATCAACCTCCAGACAACCAAGCTCCCGAGCCATGTACACCGCATCCCCGTGGTGGTCCAGTCAGTGCCTCTGGTGTACACAGCCGTCAGGTCACCAGGAAACATGAACTCTACTATTATGCTACCTCTGCTGGAGGAAGGCAGGAATCAGGTCAAAGCACAAACAGACCCCAACGGCTTGTCTCCGAGACAAATCAAAAGTGACAGTGATGATGACGACCTGCCAAATGTTGACGGGGAGGGCTACCACATCACAGCCCAttctATTTCACCATTCAGTATTGAGGGCACGAGGCGCCCAAGGAGGTCTGAATCCCCCGACTCCAAGAAGCGCCGTATTCACAGGTGTGACTTTGAGGGCTGCAATAAGGTTTACACAAAGAGCTCCCATCTGAAAGCACATCGGAGGACACACACAGGTGAGAAGCCATACAAGTGTACCTGGGAAGGATGCACATGGAAGTTCGCCCGCTCTGACGAGCTCACCAGGCATTACCGCAAGCACACAGGGGTGAAGCCCTTCAAGTGTGCGGACTGTGACCGCAGCTTCTCGCGCTCCGACCACCTGGCCCTGCACCGCCGCCGACACATGCTGGTGTGA

Function

NR:

description
PREDICTED: Krueppel-like factor 12

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K09205 KLF8_12; krueppel-like factor 8/12

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014568 True 1107 mRNA 0.56 7 18115011 18179286

Neighbor

gene id symbol gene type direction distance location
AMCG00014566 NA coding downstream 77442 18029841 ~ 18037569 (-)
AMCG00014562 dach1,LOC105030421,LOC106586049 coding downstream 179297 17935166 ~ 17935714 (-)
AMCG00014561 dach1,LOC107668899,LOC108426032 coding downstream 306581 17754964 ~ 17808430 (-)
AMCG00014558 NA coding downstream 532937 17572903 ~ 17582074 (-)
AMCG00014557 NA coding downstream 548365 17555667 ~ 17566646 (-)
AMCG00014571 NA coding upstream 84669 18263955 ~ 18291505 (-)
AMCG00014572 LOC107655530,LOC107720111,LOC107668890 coding upstream 137568 18316854 ~ 18317264 (-)
AMCG00014570 NA coding upstream 138799 18318085 ~ 18323699 (-)
AMCG00014578 kctd12 coding upstream 288124 18467410 ~ 18468282 (-)
AMCG00014577 zgc:162944,LOC108424409,LOC103034916,LOC107705163,LOC107658212,LOC108266838,LOC107597427 coding upstream 296257 18475543 ~ 18477922 (-)
G70954 NA non-coding downstream 110988 18003810 ~ 18004023 (-)
G70898 NA non-coding downstream 764039 17349436 ~ 17350972 (-)
G70876 NA non-coding downstream 830435 17284319 ~ 17284576 (-)
G70731 NA non-coding downstream 1645783 16465779 ~ 16469228 (-)
G70689 NA non-coding downstream 1745547 16366124 ~ 16369464 (-)
G71016 NA non-coding upstream 149911 18329197 ~ 18331100 (-)
G71133 NA non-coding upstream 484978 18664264 ~ 18664631 (-)
G71157 NA non-coding upstream 489515 18668801 ~ 18669655 (-)
G71160 NA non-coding upstream 507212 18686498 ~ 18687346 (-)
G71174 NA non-coding upstream 671438 18850724 ~ 18851111 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other downstream 92916 17990651 ~ 18022095 (-)
AMCG00014559 NA other downstream 493860 17589267 ~ 17621151 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other downstream 652721 17446868 ~ 17462290 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other downstream 1377134 16722073 ~ 16737877 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 4981260 13087608 ~ 13133751 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 1022517 19201803 ~ 19203567 (-)
AMCG00014603 tpt1,LOC106582181 other upstream 1038436 19217722 ~ 19225230 (-)
AMCG00014630 LOC107672672 other upstream 4046638 22225924 ~ 22244915 (-)
AMCG00014693 NA other upstream 9106134 27285420 ~ 27304597 (-)
AMCG00014692 LOC107756725 other upstream 9156409 27335695 ~ 27369527 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037233 klf12b coding NC_007120.7 CM002893.2 30720048 ~ 30783892 (+)