AMCG00014604 (kctd4,LOC107688678,LOC107748885)


Basic Information

Item Value
gene id AMCG00014604
gene name kctd4,LOC107688678,LOC107748885
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 19201803 ~ 19203567 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014604
ATGGAAAGTGAAATAAGGCAAATGAATCCAGATTTGCTTCAGCCCAGCAAGAGCTTTAAGAAGCCGTCCTCGTTTACTTTCACCCTCAATATCGGAGGCTATCTCTATGTCACTCAGAAGCAGACTTTATCCAAATACCCAGGGTCGTTGCTGGAAGAGATAGTGACTGGGAAAAAGGCAGTATTGCACGTGGACTCCGTAGGCAATGCCTTCATCGACAGGGACGGTCCTCTCTTCCGCCACGTCCTCAACTTTCTGCGGATCGGGGAGCTGCTCCTGCCTGAAGACTTCAAAGAGTACAGCCTGTTGGTTCGCGAGGCTGAGTTTTACCGTTTAGGGGAGCTTTCAGAAGCAGTCAAGAACTGTGAGCAGCAGCAGGCAGCTGCCAGGGAGCCTGCCTTTCTGGAGGTGACAGACAGCCATGAGCGCTCCCAGGGCCTCAAGGTCTTCTGCAGTGACTCCAGCTTCATCGAGAAGGTCAAGGGGCGCCTGGTGCAGGTGTCCAAGAGCAGGCTGGATGGTTTCCCTGAAGAGTTTGTGGTCTCCTCCAACGTGATCCAGTTCCGGCACTTCATCAAGTCCGAGATGGGCTCACGGCTGGTGCTGAAGGAAGACAACACTTTCCTGTGCACCCTGGAGACCCTCAAGCTGGAGATCGTGATGCTGGCGCTGCGAGGAGGGTACCGCCTGCTCACCAGCCTGGACAGCTCTCGGGGATCCGTGGTGCACTGCGAGGCGCTCCACTTCGTCAAGTGA
>TU89162
CACTTTCCTGTGCACCCTGGAGACCCTCAAGCTGGAGATCGTGATGCTGGCGCTGCGAGGAGGGTACCGCCTGCTCACCAGCCTGGACAGCTCTCGGGGATCCGTGGTGCACTGCGAGGCGCTCCACTTCGTCAAGTGAGCTCCTCCACCAACACACAGCAGCCTTTCCCTGTGTCCTAACAGCATCTGGCCTCAAGTTACAGAGTCCAAAAGGAAGATGTTGTTTTGCAGGTTACTATGTAGTTCATAGCTCCAAAGCGCCCATCTGCACATCACAGCTCGGAGTGATATATTCAGTAttgtgcgtctgtgtctgtgtatgatTTAATACGATTCATCTCGCCCGTGGCTTTCGGTTTTTAGCATCTTGGTAAGTGTCAAGTTTTATTGTGCTGCCAGAGGCTGTTTAAATGACATGGATTAACAACTCCTTGCCAAACTATTTCCTCAAATTAcagatgaagaaaataaataaatgttttagttgttttcttcaaatgaTGGAATCTTATCCAGTCATCCAAAATGAACAATGCAGTAAAGCTGTTCTTGTAGAACAAACTCGCACAGAATCCACGGTCTCTCACTTAGCTAAGCAAGTGTAAAATGTGTGCCGATTAAAGAGcattaaaatgtgaacaaaaggataagtgaaaaaaaaaattaatggtCTGTAATTGTCACATGAAGTAATCTTCGCAATGTCAAAATGCTGTGTGGCATATATGATGCAATGAAAATGCTGTAATAGAAATCACAAAAAAGGCTTCATTATCTGGTTAAAATTGATTAATGCATGcgtaaaaatatattaaacaaaactgttgttttagtttttttaattaaatctgtaatatGGGCTATTATGTTTAGTTACTATAAGTTACAAGAAATGTATCTTTGTGGAGTTCCGTTGTCTTATGACAATAAAGAGAATAACAAATTATCTAAATCGGTTCTTCTAAATAAACGtcactttataaaacaaaaccctttTCACTTGTGCCAACCACAAACACGTGAATGCACAACCTATTAATACCGTGCAGCACACATATATACGcctttgcaaaaatatatttttgaagctATTTGGCATAGTCTTTACAGCTGGCACAGTAAATCCTTCACTGTGACTGTAACGGGGC

Function

symbol description
kctd4 Predicted to act upstream of or within ion transport and protein homooligomerization. Is expressed in hindbrain; hypothalamus; and telencephalon. Orthologous to human KCTD4 (potassium channel tetramerization domain containing 4).

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process
GO:0006811 ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014604 False 756 mRNA 0.55 1 19202812 19203567
TU89162 True 1148 lncRNA 0.39 1 19201803 19202950

Neighbor

gene id symbol gene type direction distance location
AMCG00014600 NA coding downstream 17610 19174682 ~ 19184193 (-)
AMCG00014602 tsc22d1,LOC107713726,LOC107551985,LOC107748883,LOC107576221 coding downstream 39016 19159929 ~ 19162787 (-)
AMCG00014601 tsc22d1,LOC107551985,LOC107713726,LOC107688650,LOC107748883 coding downstream 78977 19114367 ~ 19122826 (-)
AMCG00014597 NA coding downstream 202786 18971436 ~ 18999017 (-)
AMCG00014593 NA coding downstream 254882 18932137 ~ 18946921 (-)
AMCG00014615 NA coding upstream 127321 19330888 ~ 19338660 (-)
AMCG00014614 NA coding upstream 138564 19342131 ~ 19345670 (-)
AMCG00014616 NA coding upstream 183048 19386615 ~ 19390852 (-)
AMCG00014623 LOC108428456 coding upstream 1155579 20359146 ~ 20401033 (-)
AMCG00014621 NA coding upstream 1248617 20452184 ~ 20458681 (-)
G71284 NA non-coding downstream 10171 19191385 ~ 19191632 (-)
G71179 NA non-coding downstream 323550 18874605 ~ 18878253 (-)
G71174 NA non-coding downstream 350692 18850724 ~ 18851111 (-)
G71160 NA non-coding downstream 514457 18686498 ~ 18687346 (-)
G71157 NA non-coding downstream 532148 18668801 ~ 18669655 (-)
G71290 NA non-coding upstream 9077 19212644 ~ 19214404 (-)
G71291 NA non-coding upstream 11047 19214614 ~ 19215246 (-)
G71292 NA non-coding upstream 12646 19216213 ~ 19217037 (-)
G71315 NA non-coding upstream 49007 19252574 ~ 19255934 (-)
G71360 NA non-coding upstream 589232 19792799 ~ 19880231 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other downstream 1179708 17990651 ~ 18022095 (-)
AMCG00014559 NA other downstream 1580652 17589267 ~ 17621151 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other downstream 1739513 17446868 ~ 17462290 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other downstream 2463926 16722073 ~ 16737877 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 6068052 13087608 ~ 13133751 (-)
AMCG00014603 tpt1,LOC106582181 other upstream 14155 19217722 ~ 19225230 (-)
AMCG00014630 LOC107672672 other upstream 3022357 22225924 ~ 22244915 (-)
AMCG00014693 NA other upstream 8081853 27285420 ~ 27304597 (-)
AMCG00014692 LOC107756725 other upstream 8132128 27335695 ~ 27369527 (-)
G72236 rpl8,LOC107595836,LOC107748161 other upstream 9126172 28329739 ~ 28332482 (-)

Expression


Co-expression Network