AMCG00014607


Basic Information

Item Value
gene id AMCG00014607
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 19184279 ~ 19190953 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014607
CCTGTGTAAAGTGTTTACTTTTTGCAGCGGCACGTTTTTCAGTGTGTTAATACAGATTGTCTGGGTGTTGAGGTGTAGTGAGAGATATTATGTCTGATACTGAAGACATTATTGGGCCAGCCCTGCCTCCGGGCTTTGCAGAAAACAGATCAGACGATTCCGATGAAGACACAGTTGCAGGCCCAGCACTGCCTCCAGGGTACAGGCCCGGGGGGAGCTCCAGTTCTGCAGAGGATAGCGAGCAGGAGGAGGTTTTGTTTAAGAGAGGGAGAGCCAGCGGTCCTGCCTTGCCACCTGGCAGCTCTAGCCACAAACGTTTATGCCGTGATGAAGATGGACCAAAACAAAGCAAAATGAGGAGGGTGCAAGAAGCAGAGAGAAATCCACAGGAAGATGACGATGATGACGGCTTCTTTGGTCCCGCTCTCCCTCCTGGCTATCAGAAACGACATGACTCCCCTGAGAGGCCTATTTTAGGACCAGCTTTGCCCCCTGGGTTTACCAAACcagttgatgatgatgatgatgatgatgatgatagtcAAGACTGCACTGGACCTGCATTACCACCAGACTACACTGCAGAGGCCTCCAGCAGTGATGACGATGATGGTGAAGTTATAGGACCGTTGCCTCCCAAGGGACCAATCGAAAACACTGTTGCCATGGAGTTTGAACGCAGAGCACAGAAGATGAAAGAAAAGCTTATTTCTGGAGGCGACGATGACCCAAAGGAGCAGGCTCGGGAGACGTGGATGATTGAGCTCCCCCCGGTATTGCAGCACATCGGTCTGGGAGCCAGGACTTTCAAGAAACGGGCAGGGCCAGAGTCCAAGGACCGTTCTCTTTGGACAGACACCCCGGCGGACAAGGAGAGGAAAATCATGgAGCGTCTGGAAGGGAAAGAGAGTTCTAAGCCAGAGAAGGAGGAGATTGTGCAGCCATCAGCAAAAGATCTGAAGATGGCAGAGAAGGTGTCCAAGTACAATGAGTCCAAGCGAGCAGAGTCCCTTATCAGCATGCACAGTaaaaagatgaagaagaagTCCGAGGAGGAGGCCAAGAAACCCCAGGAGAGGAGGGCCTTTGACAGAGACCAGGACCTGCAGGTGAACCGCTTCGACGATGCCCAGAAGAAGGTTCTCCTCAGGAAGTCTGAGGAGCTCAACACGCGCTTCTCCCACAGCAAGGGCAGCATGTTCCTGTAGCGCTCTGCCCTGCTGGCTCACTCCCATGGACTGCCACAGGCCTCCCTGTGGAAAAGAACAGCTGGGTTTGTCTGGTATATGCTTCTTTGAAAAGGGTTCATAGAAAATTAGGCAGCGGACCGATTTTTATACAGTCACACATTCAcaactggaaaatgaaaaaataaagaaaaaactggGAAAGCTTGCAGTTAGATTCTGAGTTagcatgaaacatttttttgttttgtttgtttgcttgtgtatGTGCACACAcctatatttctattttttttccaactctTAGTATTCATCTTTTAGAGTTGGAGTCTATTTTAGAGTTTCAAACCTGATTTAAACATGCATACTAAAGCTTTCTCTGAGTGTACAGCTGTGTGTCAGaaccctgcaatttcagacccACTTGTATTTAATTGACTCCGTTCATGCCAGATCTGTGTTGGATGAAACATGAGCACACATGTTTGAAAAATGTTCCCTGAAAGTTCAAAGCTTAGATCAGGAGGTATAAGCTATGAATACCCATCATACTTTTGTCAGGCCCATGTTTCAATAAGGGATGAttgtatattgcattgttttataaGAAGTAGACCTAATTAAACTCAAATGTATCAGGCTGCATGACAGGTGATCACAGGTAAGGACAGGATACCACTGATTAGAGTGTAAAGAATGGGAGTTTTGAGAtacctattttgtatttgtttttaacgaTGTAAAGTATATAGTTTAGTGTAATTTGGAGAAAACACCACACAGTAAagcattaatataaattaaaactggaTTGTATGTCATATCTACTGTTAAATTACAACTATTTTGATGTTCATAAATAGCCTGTAACACagacagttatttttaaaacatttggcCATTTCTGTTGATACAAGgatgtttatgttttttcttaaaacaatttaatcatattcattattaccttgttaaataataacactgtaaacacttctggatttcattgaaataattgtatgctgttttgaatAAAAGTCATTTAATACAGAACATATGTGGGTATTtcttatgtatatgtatatgtatctgtatttgaatgtggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014607 True 2290 mRNA 0.43 8 19184279 19190953

Neighbor

gene id symbol gene type direction distance location
AMCG00014599 NA coding upstream 127816 19048293 ~ 19056463 (+)
AMCG00014598 NA coding upstream 136638 19045683 ~ 19047641 (+)
AMCG00014595 dnajc15 coding upstream 221236 18949313 ~ 18963043 (+)
AMCG00014594 NA coding upstream 284079 18889772 ~ 18900200 (+)
AMCG00014596 akap11 coding upstream 306006 18853308 ~ 18878273 (+)
AMCG00014613 NA coding downstream 2466 19193419 ~ 19196839 (+)
AMCG00014612 gtf2f2 coding downstream 23323 19214276 ~ 19216333 (+)
AMCG00014610 slc25a30,LOC105911955,LOC100698510,LOC104935787,LOC102198731 coding downstream 32828 19223781 ~ 19236789 (+)
AMCG00014608 cog3 coding downstream 46617 19237570 ~ 19252607 (+)
AMCG00014609 ednrb,LOC108434743,LOC107658690,LOC107566659,LOC105911940 coding downstream 94380 19285333 ~ 19291750 (+)
G71237 NA non-coding upstream 136107 19047958 ~ 19048172 (+)
G71183 NA non-coding upstream 282118 18901225 ~ 18902161 (+)
G71136 NA non-coding upstream 491646 18688548 ~ 18692633 (+)
G71038 NA non-coding upstream 706251 18477043 ~ 18478028 (+)
G71036 kctd12 non-coding upstream 715944 18465219 ~ 18468335 (+)
G71283 tpt1,LOC106582181 non-coding downstream 27364 19218317 ~ 19222919 (+)
G71362 NA non-coding downstream 733949 19924902 ~ 19925198 (+)
G71378 NA non-coding downstream 995661 20186614 ~ 20186966 (+)
G71414 NA non-coding downstream 1733615 20924568 ~ 20924837 (+)
G71424 NA non-coding downstream 2120637 21311590 ~ 21312022 (+)
G71004 NA other upstream 909919 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 1697229 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 2715070 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 3045247 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 3498380 15675631 ~ 15685899 (+)
G71525 NA other downstream 3664389 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 7713924 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 8644550 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 8677750 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 9111420 28302373 ~ 28304073 (+)

Expression


Co-expression Network