AMCG00014609 (ednrb,LOC108434743,LOC107658690,LOC107566659,LOC105911940)


Basic Information

Item Value
gene id AMCG00014609
gene name ednrb,LOC108434743,LOC107658690,LOC107566659,LOC105911940
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 19285333 ~ 19291750 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014609
CAGCAACAGAGCTGTGATTGATCTCCCAGCCCTCCAGAGATAAAGTCTTGGTCTAACATGATGATTCGACCTCAGTAGGAGTAGTTTTGATCTCAGACAAGACACGCATCATCCGCACATCATGCCACTGAAGGACTCTGGGCACCCACCAGCCATGTCCTCCTGAGCATTTCATATCCGCTAAGGTTCTTTCTGGAATTAAAACCACATCCCGAAAAACAGAGATTGCAATCTGCTCCCATTCGTGCAGAACACACAAGCAGCTGTTCTGAAGATGGCAAAGATACGGCTTATGACGTCCCTGCTCTTGCTGGTGCTGGTCGAGCCCCTGACGCTGCCAGTCTCTGCCCAGAACCTGGATCCGACACCGAAACCCCAAGGCGGCAGGCATGCTCTCAGTATCAACATCTCCAATGCGCTGCCTGCTCACAACCATCCCAAAACCATGAAGCCGGGCGGTCCCAGGCAGTTGCCGCCAATGTGTTCAGGACCCACTGAAATCAGGGATACTTTTAAGTACATTAACACGGTGGTCTCCTGCCTGGTGTTTGTGGTGGGGATCATCGGCAACTCCACCTTGCTGAGGATcatctacaaaaataaatgcatgagaAACGGACCGAACATCCTCATCGCCAGTCTCGCATTGGGAGATCTGTTGCATATTGTGATTGATATACCTATAAACGTGTACAagTTTTATAAGTCTGCGAAAGACTGGTGGCTGTTCAGCTTCTACTTCTGCATGCCCCTAGCGTGTACAGCCATTTTCTACACGCTCATGACATGTGAGATGCTGAGAAAGAAAAACGGAATGCAGATCGCTTTAAATGATCACCTTAAACAGAGGCGTGAAGTGGCAAAGACAGTTTTCTGTTTGGTACTTGTATTCGCTCTTTGCTGGCTACCCCTGCACGTCAGCAGAATCTTGAAGTTAACCATTTATGACGAAGAGGACCCTAATCGGTGTGAATTACTGAGCTTCTTCCTTGTTCTGGATTATATTGGCATCAACATGGCTTCCGTAAATTCTTGTATCAATCCCATTGCACTCTACTTGGTCAGCAAGAGATTCAAAAACTGTTTCAGGTCGTGCCTGTGCTGCTGGTGCACATCCCCAGACATGCTGGCCCTGGATGACAAGCAATCCTGCATGAAGTCAAAAGTCAACGACCGCGCCTCTGAACAGAGCAACTCCCGCCCCACAAACAAATACACCTCCACCTGAAGCTGCTTGTTCACAAAACACTGATTTCAGCTGGACTTCTCTCAGCTGACtaaaaaattatttttttatcatcacAAGTATGTTTTCTCCCACCTGGGAAACCATGTGTGAAGGCACTTAAGACAGtgactgttttaattttttatgactgtttttgtaaagaaacttcatttgcatttcatatcTGTTAAATGCACTCTGATCGGGCACCCCATAGAAATAGGTGCTTTCTCTGGGAAAGGAATTTGGAGCCTTATTAAGAATTAATGTTGCGTTAAGGCCTCTCTTATGAATATTTCAAAGCTAGATGAATCAGAGATGGTAGCCAATTTGCAAGAAAAGATCGCTAACATGTTTGACAAACTCTCATTtcagattaatacaaattattacatCATCAATCAATGAAAAGCTATGGGTCTTAAGGGTCACATTTTTATTACTGAATATAACTTccaacacaatatttaaatattgtgctgTTGACCAATTCATTTCAATGCGCTTCAGCtgccttcattttcatttccttgTTATTCTACGTTGCCCCCAGTCTAGGAAATCATGGATATGTTTCAGACTGTCCTGGTAAAAGCTCATTAACAAATCTGTTGCAGAAAGACTAAATAGGAGCTTTATCTGAGTAACAAGTTCcccattttaattacaatgaaCTGACTTTAATAATAGTAAACTTGCTTTGTTATGTAGCATCTGGGTAACTCCTTATATACAGAGCACAGCACGAGCTACAACTGTATAAGGAAGACTCAGCCTTGTTCCATTATTAACAGCCACActgtttttacatacattttctttaaacaaagtgTTAAAGAAAACTTAATGGGCAGGTCCCATGgttaagatgttttatgtttctaaataataaaaaaatatatcacaaaaaaacagaacaaagaaatTATAACTTGCCTGGCGCAATGTTTGTATTATACTGTTTTTTATGTTACTTATGCCTTATGATGTGAATCAAGCTTAATTTTGTAACctaaaaaatatcagaaaacgTGCTGAGCAATAACTGCTTTGTTATGTTCATGATACTGCATTCATGTCGATTCACATTTTAATAGCTATAATAGTTTTACTACTGTCAATCGGTGGGCTTTGAGTAGCTTAGTGTGGACAATGACAATCACTGCATTCAGCTTGATTTTCAGCTCAATCAAGAGCTACACatgtatcaatattttattgcatgaaGTGCCAGTATTTAATAGCTTTCAATATTATGAAACACTGTATTATATTAGCTATGTAAGCATTACTGTACATATTGTGCATACCTTTGTGCATTCataaaaacagatgtttgttttttatacatatataatttagtaaatttgttttttattatacatttatttgtatggcTTATCACTGAAGGATTATAGTACTGTTG

Function

symbol description
ednrb Enables endothelin receptor activity and peptide hormone binding activity. Involved in several processes, including macrophage chemotaxis; negative regulation of nitrogen compound metabolic process; and vein smooth muscle contraction. Located in plasma membrane. Implicated in ABCD syndrome; Hirschsprung's disease; Waardenburg syndrome type 4A; Waardenburg's syndrome; and asthma. Biomarker of pulmonary hypertension.

NR:

description
PREDICTED: endothelin B receptor

GO:

id name namespace
GO:0086100 endothelin receptor signaling pathway biological_process
GO:0048484 enteric nervous system development biological_process
GO:0008217 regulation of blood pressure biological_process
GO:0042310 vasoconstriction biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004962 endothelin receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014609 True 2654 mRNA 0.40 6 19285333 19291750

Neighbor

gene id symbol gene type direction distance location
AMCG00014608 cog3 coding upstream 32726 19237570 ~ 19252607 (+)
AMCG00014610 slc25a30,LOC105911955,LOC100698510,LOC104935787,LOC102198731 coding upstream 48544 19223781 ~ 19236789 (+)
AMCG00014612 gtf2f2 coding upstream 69000 19214276 ~ 19216333 (+)
AMCG00014613 NA coding upstream 88494 19193419 ~ 19196839 (+)
AMCG00014607 NA coding upstream 94380 19184279 ~ 19190953 (+)
AMCG00014606 NA coding downstream 4666 19296416 ~ 19317255 (+)
AMCG00014611 LOC107384298,LOC104941757 coding downstream 28119 19319869 ~ 19330918 (+)
AMCG00014605 NA coding downstream 88681 19380431 ~ 19384319 (+)
AMCG00014617 NA coding downstream 551402 19843152 ~ 19844042 (+)
AMCG00014618 NA coding downstream 667839 19959589 ~ 20021694 (+)
G71283 tpt1,LOC106582181 non-coding upstream 62414 19218317 ~ 19222919 (+)
G71237 NA non-coding upstream 237161 19047958 ~ 19048172 (+)
G71183 NA non-coding upstream 383172 18901225 ~ 18902161 (+)
G71136 NA non-coding upstream 592700 18688548 ~ 18692633 (+)
G71038 NA non-coding upstream 807305 18477043 ~ 18478028 (+)
G71362 NA non-coding downstream 633152 19924902 ~ 19925198 (+)
G71378 NA non-coding downstream 894864 20186614 ~ 20186966 (+)
G71414 NA non-coding downstream 1632818 20924568 ~ 20924837 (+)
G71424 NA non-coding downstream 2019840 21311590 ~ 21312022 (+)
G71452 NA non-coding downstream 2827833 22119583 ~ 22122533 (+)
G71004 NA other upstream 1010973 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 1798283 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 2816124 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 3146301 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 3599434 15675631 ~ 15685899 (+)
G71525 NA other downstream 3563592 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 7613127 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 8543753 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 8576953 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 9010623 28302373 ~ 28304073 (+)

Expression


Co-expression Network