AMCG00014612 (gtf2f2)



Basic Information


Item Value
gene id AMCG00014612
gene name gtf2f2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 19214276 ~ 19216333 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00014612
ATGAAGTTGAAAAGGCTACAGATTGAAGAATCATCTAAACCTGTCCGCCTGTCACAACAGCTGGATAAGGCAGTCACGACCAACTACAAACCGGTGTCAAATCACACTTACAACGTGGAGTACgataagaagaagaaggaggaaggGAAGCGAGCTCGGGCCGACAAGCAGCAGGTCCTGGATATGCTCTTCTCGGCCTTTGAGAAGCATCAGTACTACAACATCAAGGATCTGGTGGACATCACCAAACAACCTGTGATTTACCTGAAAGAGATTCTGCGTGAGATTGGGATCTACAATGTGAAAGGCACCCACAAAAACACGTGGGAGCTCAAGCCAGAGTACAGACACTACCAGGGCGAGGAGAAGAGTGACTAG

Function


symbol description
gtf2f2 Predicted to enable RNA polymerase II general transcription initiation factor activity. Involved in transcription by RNA polymerase II. Located in microtubule cytoskeleton and nucleoplasm. Part of transcription preinitiation complex.

NR:

description
PREDICTED: general transcription factor IIF subunit 2 isoform X1

GO:

id name namespace
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005674 transcription factor TFIIF complex cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K03139 TFIIF2, GTF2F2, TFG2; transcription initiation factor TFIIF subunit beta

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00014612 True 378 mRNA 0.48 4 19214276 19216333

Neighbor


gene id symbol gene type direction distance location
AMCG00014613 NA coding upstream 17437 19193419 ~ 19196839 (+)
AMCG00014607 NA coding upstream 23323 19184279 ~ 19190953 (+)
AMCG00014599 NA coding upstream 157813 19048293 ~ 19056463 (+)
AMCG00014598 NA coding upstream 166635 19045683 ~ 19047641 (+)
AMCG00014595 dnajc15 coding upstream 251233 18949313 ~ 18963043 (+)
AMCG00014610 slc25a30,LOC105911955,LOC100698510,LOC104935787,LOC102198731 coding downstream 7448 19223781 ~ 19236789 (+)
AMCG00014608 cog3 coding downstream 21237 19237570 ~ 19252607 (+)
AMCG00014609 ednrb,LOC108434743,LOC107658690,LOC107566659,LOC105911940 coding downstream 69000 19285333 ~ 19291750 (+)
AMCG00014606 NA coding downstream 80083 19296416 ~ 19317255 (+)
AMCG00014611 LOC107384298,LOC104941757 coding downstream 103536 19319869 ~ 19330918 (+)
G71237 NA non-coding upstream 166104 19047958 ~ 19048172 (+)
G71183 NA non-coding upstream 312115 18901225 ~ 18902161 (+)
G71136 NA non-coding upstream 521643 18688548 ~ 18692633 (+)
G71038 NA non-coding upstream 736248 18477043 ~ 18478028 (+)
G71036 kctd12 non-coding upstream 745941 18465219 ~ 18468335 (+)
G71283 tpt1,LOC106582181 non-coding downstream 1984 19218317 ~ 19222919 (+)
G71362 NA non-coding downstream 708569 19924902 ~ 19925198 (+)
G71378 NA non-coding downstream 970281 20186614 ~ 20186966 (+)
G71414 NA non-coding downstream 1708235 20924568 ~ 20924837 (+)
G71424 NA non-coding downstream 2095257 21311590 ~ 21312022 (+)
G71004 NA other upstream 939916 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 1727226 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 2745067 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 3075244 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 3528377 15675631 ~ 15685899 (+)
G71525 NA other downstream 3639009 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 7688544 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 8619170 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 8652370 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 9086040 28302373 ~ 28304073 (+)

Expression



Co-expression Network