AMCG00014660 (tm9sf2,LOC106574826,LOC107705039,LOC107719731,LOC107654273,LOC107556717)


Basic Information

Item Value
gene id AMCG00014660
gene name tm9sf2,LOC106574826,LOC107705039,LOC107719731,LOC107654273,LOC107556717
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26036433 ~ 26052543 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014660
CAGATGACGTGTCTGGGACTGAAAGTGGGTTAGAAGCTCCCCATGTCCACCGTCCTGCGCAGCAGCGTCCGTTTATTTAGAGTGGCAGATATACctcattttgcttatttttgaCTAAtgtaaatagtgtttttttttaattattattatttaggtcGCTGTAattaaaagaagcaaaaaaacaacaaccatgtACATCTTTTATAATGCCCTCTCTGTCCTGAGACTCTCTCTGCTGCTGACTGAAAGCTTGCACATCGCTTCAAGTTTCTATCTTCCGGGTTTGGCTCCTGTCAGTTTCTGTGAGAAAGACCAAGCAGCGAAAGACCATGAAGTACCGGACTGCAGGTCGGAAATTGAGCTGTTCGTGAACAGATTGGATTCTGTGGAGTCGGTTCTGCCCTACGAATACACAGCGTTTGATTTCTGCTCTAAAGACACTGAAAAACGGCCTTCTGAAAATTTAGGTCAAGTTTTGTTTGGTGAGAGAATTGAATCTTCACCGTATAAGtttcaatttaaaaagaaagaagaatgtGCACCTGTTTGTACCAAAACATATGACACAAGTAAACCTGAAGACAAACAAAAGCTGGAATTTTTGAAGAAAGGGATGCTTCTGAACTATCAACATCATTGGATTGTTGATAACATGCCTGTAACATGGTGCTATGATGTGGAAGACGGACAGAAGTTTTGCAATCCTGGCTTCCCTATTGGATGTTATGTGACTGAGGAGGGTCGACCAAAAGACGCTTGTGTTGTCAATTCAGATTTTAATGACAAAGATACGTTTTACATCTTTAACCATGTTGATATCACAATCTCATACCACGTGGTAGAGAATGAAGCAGCAGGAGCGAGCTATAAGCGCAGTCAGGAGAAACCTGATTGCACAGGTCCTCCCATGGACTTAAGCAATAAATTTTCCGGAGAACTCAAAATCACCTATACGTATTCTGAAGACAATACCATTAGATGGGCCTCACGTTGGGATTATATCCTGGAGTCAATGCCCCACACTAACATTCAGTGGTTCAGCATCATGAATTCCCTTGTGATTGTCTTGTTCCTCTCTGGTATGGTGGCGATGATAATGCTCAGAACTCTGCACAAAGATATTGCCAGATACAATCAAATGGACTCTGTtGAGGATGCCCAAGAGGAATTCGGTTGGAAGCTGGTCCACGGTGACGTCTTCAGACCACCGAGGAAGGGCATGCTGTTGTCTGTTTTCATCGGCTCCGGCACACAGATCTTCATCATGACTTTTTGCATGCCTGGGATTTTTATCACCTGCCAACAGAGGAGCCCTGATGACTTGCGCTGTGGTTCTGTGGGTGCTGCTGGGAACTCCAGCAGGTTTCGTGGCTGCCAGATTCTACAAGTGATTGTGTTCGCGGATTTCTTTCTGATGAACTTAATATTATGGGGAGAAGGCTCTTCAGCTGCCATGCCGTTTGGCACACTGGTTGCGATTTTGGCATTGTGGTTCTGCATATCTGTGCCCCTGACCTTCATTGGCGCTTACTTTGGTTTTAAGAAGAATGCCATTGAGCACCCAGTCCGCACCAACCAGATCCCTCGTCAGATTCCTGAGCAGTCCTTCTACACCAAGCCTTTGCCAGGGATCGTCATGGGAGGGATTCTCCCCTTTGGCTGCATCTTCATTCAGCTTTTCTTCATCCTCAACAGCATCTGgtCTCACCAGATGTATTACATGTTTGGATTTCTCTTCCTGGTCTTTATCATTCTGGTGATCACATGCTCTGAAGCCACAATCCTCTTGTGCTACTTCCATCTGTGTGCTGAGGACTATCACTGGCAATGGCGTTCTTTCCTGACTAGTGGATTTACTGCAGTCTACTTTCTTGTATATGCAGTCCATTACTTTTTCTCGAAACTTCAGATTACGGGATTAGCAAgtactattttatattttggataCACAATGATAATGGCTTTGATCTTTTTCCTCTTTACAGGAACAATTGGATTTTTTGCATGCTTTTGGTTTGTGACCAAAATATACAGCGTGGTGAAAGTGGATTGAGATGAGTTGAGCAAGTGTTGCTTTCACAGCTGAGGATCTGTCAGGTGGAGAGACGAACATGTGAATGGACCTCCTGGCATTGATGTGATTTaatcacaaattataataaaacctaACACTTGTAAATGTGTTTCCAATGCTAActacgttttttttgttttgttttagtagtaCAAAACACTATGAAggtgaattaaaaagaaaatgcatactATATGCCATATCATGCtacaggtaaaataaaataaaaaacgaagtATGTAAATATGACTTACCTTTTGATAATTTGATTCTAATTACCCTCCAAATACTAGGCTTAGGAAAGTCATGCATATCACTGAAACTTTACAGTCGGGTAAATATACttgtaaataacattttctaatgCTGAAGGAAAATAGAAAACGAGATGCGGGTGAATGGAGTCTCAGATCTTGAAGTAGGAAGCCTAAAACCTTtataaagtttttgtttttcatttttgttctcaTATTCTTGTGTTTGAAAGGTGCAGTCTAATCAGCTcgactttatattttttttatttaacttatatatttttgttttgcctttacACACTTTGTGCCTCTTGAGTATATTGATTTGTAAATTTATAGTAataaatgttgtacaaatggTCACTTGTAATTAgtcttcatttcagattttttagATATGTGAGGcgttctttaatatttttaggAATCTGtg

Function

symbol description
tm9sf2 Predicted to be involved in protein localization to membrane. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in several structures, including digestive system; eye; heart; integument; and pleuroperitoneal region. Orthologous to human TM9SF2 (transmembrane 9 superfamily member 2).

NR:

description
PREDICTED: transmembrane 9 superfamily member 2-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014660 True 2764 mRNA 0.40 16 26036433 26052543

Neighbor

gene id symbol gene type direction distance location
AMCG00014661 gpr18,LOC107740919,LOC107681324,LOC107600424,LOC107748622,LOC107668869 coding upstream 94890 25934481 ~ 25941543 (+)
AMCG00014655 LOC107559785 coding upstream 337505 25660345 ~ 25698928 (+)
AMCG00014657 NA coding upstream 405579 25608988 ~ 25630854 (+)
AMCG00014654 kpnb3,ipo5,LOC107677849 coding upstream 443866 25575240 ~ 25592567 (+)
AMCG00014652 NA coding upstream 462425 25565157 ~ 25574008 (+)
AMCG00014665 NA coding downstream 33316 26085859 ~ 26123768 (+)
AMCG00014664 zic2,LOC106586042 coding downstream 115918 26168461 ~ 26172474 (+)
AMCG00014667 pcca,LOC107719738,LOC107707835 coding downstream 151340 26203883 ~ 26244458 (+)
AMCG00014668 pcca,LOC107654247 coding downstream 265488 26318031 ~ 26335361 (+)
AMCG00014669 LOC107748618 coding downstream 320681 26373224 ~ 26389223 (+)
G71826 NA non-coding upstream 25433 26010799 ~ 26011000 (+)
G71817 NA non-coding upstream 76731 25952233 ~ 25959702 (+)
G71784 NA non-coding upstream 265944 25770209 ~ 25770489 (+)
G71763 NA non-coding upstream 273691 25705458 ~ 25762742 (+)
G71772 NA non-coding upstream 288025 25745803 ~ 25748408 (+)
G71859 NA non-coding downstream 178676 26231219 ~ 26231565 (+)
G71963 NA non-coding downstream 899753 26952296 ~ 26953253 (+)
G71995 NA non-coding downstream 974232 27026775 ~ 27027272 (+)
G72072 NA non-coding downstream 1422521 27475064 ~ 27479444 (+)
G72169 NA non-coding downstream 2188023 28240566 ~ 28297484 (+)
G71525 NA other upstream 3180787 22855342 ~ 22855646 (+)
G71004 NA other upstream 7762073 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 8549383 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 9567224 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 9897401 16129479 ~ 16139032 (+)
AMCG00014687 NA other downstream 852334 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 1782960 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 1816160 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 2249830 28302373 ~ 28304073 (+)
AMCG00014729 NA other downstream 2744506 28797049 ~ 28837910 (+)

Expression


Co-expression Network