AMCG00014664 (zic2,LOC106586042)


Basic Information

Item Value
gene id AMCG00014664
gene name zic2,LOC106586042
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26168461 ~ 26172474 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014664
ATGCTGCTGGACGCTGGTCACCAGTTCCCTGGCTTGGGGGTTGGCACGTTTGCCAGGCATCACTCCGCCAGCGAGATGCAAGACAGAGACTTGAGCTTGGCGCAGAATAGCTTTGTCGATTCTGCACACATGGGGGCTTTTAAACTCAACCACGATCTTTCTCCGGGCCAGAGCTCGGCTTTCACCTCCCAGGCTCCGGGGTACCCCGCTGCGGCTTTGGGGGCGCATGCGGCTCATGTCACCTCGTATGCAAGTTCGCCTTTTAACTCCACCAGGGACTTTCTCTTTCGCAGCCGCGGCTTCGGAGAGTCGTCCCCGGCCAGCAGCCAGCATGCTATTTTCGGCCCCACAGCGGGGTCTCTCCATCACTCTCATACGGACACTCAAGGCCACATCTTGTTTCCTGGGATCCACGAGCAGCACGCCTCCCACGGCTCTCCAAACGTTTTAAACGGGCAAATGCGACTTGGACTACCGGGGGAAGTTTTTGGGCGATCGGATCAATATCACCAGGTATCCAGTCCCAGGACCGACCCTTACTCTGCAGCCCAACTGCACAACCAGTATGGCTCTATGAATATGAACATGGGCATGAATATGGCagctcatcatcatcatcacccgGGTGCCTTCTTTCGCTACATGAGGCAGCAGTGTATCAAGCAAGAGCTCATCTGCAAGTGGATCGACCCCGAGCAGCTGAGCAACCCGAAGAAGAGTTGCAATAAAACTTTCAGCACCATGCATGAGCTGGTCACCCACGTCTCGGTGGAGCACGTCGGGGGACCCGAGCAGAGCAACCACATCTGCTTTTGGGAAGAGTGTGAAAAGCCCTTCCAGTGTGAATTTGAAGGCTGCGACAGACGCTTTGCAAACAGCAGTGACCGGAAGAAGCACATGCATGTCCACACTTCAGACAAACCGTATCTTTGCAAAATGTGCGACAAATCATACACTCACCCCAGCTCTCTCAGAAAACACATGAAGGTCCACGAAGCCTCTCCTCCAGGGTCCGACTCCTCGCCTGCAGCCAGTTCTGGATACGAGTCGTCGACCCCCCCTGGCCTGGTCTCACCATCGACTGAAACGCAGAGTAACACCAATCTGTCGCCAGCATCAGCAGTGCACAATAACAACGGCCATACCAGTCTATCGTCTAATTTCAGTGAATGGTATGTTTAGGGCACAGTCGCCAAAAGCCCCAGAACAATTTaaccagaacacaaacaaacagcaaatctatgtatatataaaggcCTGTACAAAGAAGACCACATATAATGGACGATTTAATATGTGACATCAAGAATCGTGCTTTGTGAATACAATAACCAACCGAAGAACAACATCATTTGggaattattcatttttgtgtaaataataatattaatattaataataacaataataaaatcttCCTGTCTCCCCCTATGGTTGTAATGGATTTTGTCAATATGTGGTGTATAGATGTTCCTTCAATGGTAGCTATTTCTCTAACTGGACTTTTACTAGTGCACATATTAcgatggaaaaaaacaaaacaaaaaaaagttttctacTATGATGTTAAATATTGTGATCCCATTATAAGGCAACTTGATTGTAACTATACAACTATAAACTGGAAACAGTGCCAAAGTTAACACTTCACTCGAACAGACACAATATTTGCTTGTGAATGTATATTTTCGTTAGTTGGGTTTAACTTGTGATGTTTTGTGCTTTGCAAGTTGGATTTGTGAAATACTATTTGGAAGATTGTGGGGAAAATAAACGTTGTGCCGTTCAATTTTCTGTAACTACACCCTTCCTTTTGTAAATATCCGCTGCCATATTTAtccatttgtaattaaattatggtATTTACTTGCTACAgatgaaacaatatttataaagaatGTTTCTTaactataaatatgtaaaattgtGAGCTAAACACgatctgttctgttttgttttatgttgttattttctttcgAGGTATAAAACgtgttttctccatttcttgTGATAAGTTTTAAGAGTTTTACTgcatacaga

Function

symbol description
zic2 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and chromatin DNA binding activity. Predicted to be involved in nervous system development; regulation of transcription, DNA-templated; and visual perception. Predicted to act upstream of or within several processes, including cilium organization; neural tube closure; and positive regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry. Located in nuclear body. Implicated in holoprosencephaly and holoprosencephaly 5.

NR:

description
PREDICTED: zinc finger protein ZIC 2-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014664 True 2040 mRNA 0.45 3 26168461 26172474

Neighbor

gene id symbol gene type direction distance location
AMCG00014665 NA coding upstream 44693 26085859 ~ 26123768 (+)
AMCG00014660 tm9sf2,LOC106574826,LOC107705039,LOC107719731,LOC107654273,LOC107556717 coding upstream 115918 26036433 ~ 26052543 (+)
AMCG00014661 gpr18,LOC107740919,LOC107681324,LOC107600424,LOC107748622,LOC107668869 coding upstream 226918 25934481 ~ 25941543 (+)
AMCG00014655 LOC107559785 coding upstream 469533 25660345 ~ 25698928 (+)
AMCG00014657 NA coding upstream 537607 25608988 ~ 25630854 (+)
AMCG00014667 pcca,LOC107719738,LOC107707835 coding downstream 31409 26203883 ~ 26244458 (+)
AMCG00014668 pcca,LOC107654247 coding downstream 145557 26318031 ~ 26335361 (+)
AMCG00014669 LOC107748618 coding downstream 200750 26373224 ~ 26389223 (+)
AMCG00014670 NA coding downstream 216758 26389232 ~ 26409091 (+)
AMCG00014676 itgbl1,LOC107748609,LOC107690616,LOC107681304 coding downstream 413007 26585481 ~ 26588394 (+)
G71826 NA non-coding upstream 157461 26010799 ~ 26011000 (+)
G71817 NA non-coding upstream 208759 25952233 ~ 25959702 (+)
G71784 NA non-coding upstream 397972 25770209 ~ 25770489 (+)
G71763 NA non-coding upstream 405719 25705458 ~ 25762742 (+)
G71859 NA non-coding downstream 58745 26231219 ~ 26231565 (+)
G71963 NA non-coding downstream 779822 26952296 ~ 26953253 (+)
G71995 NA non-coding downstream 854301 27026775 ~ 27027272 (+)
G72072 NA non-coding downstream 1302590 27475064 ~ 27479444 (+)
G72169 NA non-coding downstream 2068092 28240566 ~ 28297484 (+)
G71525 NA other upstream 3312815 22855342 ~ 22855646 (+)
G71004 NA other upstream 7894101 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 8681411 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 9699252 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 10029429 16129479 ~ 16139032 (+)
AMCG00014687 NA other downstream 732403 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 1663029 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 1696229 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 2129899 28302373 ~ 28304073 (+)
AMCG00014729 NA other downstream 2624575 28797049 ~ 28837910 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G52098 NA unknown CI01000009 null 1401932 ~ 1407627 (-)