AMCG00014668 (pcca,LOC107654247)


Basic Information

Item Value
gene id AMCG00014668
gene name pcca,LOC107654247
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26318031 ~ 26335361 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014668
ATGTATGGTTTGAAGTGGATTCCCCTGCAGGAAGTGCCCAGTGGCGCCTGCTCTGATTGGATATATAAAGTGACGGTGCTGAGCAAGCTGGCGGAGGCGCTGAGCAGGCATATGCCCGAGAAAGTGCCAGAAGACACCAGCAGCATCCTGAGGTCCCCCATGCCCGGCTCGGTGGTGGCTGTATCTGTCAGTCCTGGAGACACGGTGGCCGAGGGACAAGAAATCTGTGTGATTGAGGCGATGAAAATGCAGAACAGTATGACTGCGGCCAGAACAGCCAAGgtGAAGAGCGTCCACTGTAAGCCTGGGGAGACGGTTGGAGAAGGAGATGTACTTGTGGAGTTGGAGTAA

Function

symbol description
pcca Predicted to enable propionyl-CoA carboxylase activity. Predicted to act upstream of or within lipid catabolic process. Predicted to be active in mitochondrion. Is expressed in several structures, including alar plate midbrain region; immature eye; liver; optic tectum; and segmental plate. Human ortholog(s) of this gene implicated in amino acid metabolic disorder and propionic acidemia. Orthologous to human PCCA (propionyl-CoA carboxylase subunit alpha).

NR:

description
PREDICTED: propionyl-CoA carboxylase alpha chain, mitochondrial

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004075 biotin carboxylase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014668 True 351 mRNA 0.55 4 26318031 26335361

Neighbor

gene id symbol gene type direction distance location
AMCG00014667 pcca,LOC107719738,LOC107707835 coding upstream 73573 26203883 ~ 26244458 (+)
AMCG00014664 zic2,LOC106586042 coding upstream 145557 26168461 ~ 26172474 (+)
AMCG00014665 NA coding upstream 194263 26085859 ~ 26123768 (+)
AMCG00014660 tm9sf2,LOC106574826,LOC107705039,LOC107719731,LOC107654273,LOC107556717 coding upstream 265488 26036433 ~ 26052543 (+)
AMCG00014661 gpr18,LOC107740919,LOC107681324,LOC107600424,LOC107748622,LOC107668869 coding upstream 376488 25934481 ~ 25941543 (+)
AMCG00014669 LOC107748618 coding downstream 37863 26373224 ~ 26389223 (+)
AMCG00014670 NA coding downstream 53871 26389232 ~ 26409091 (+)
AMCG00014676 itgbl1,LOC107748609,LOC107690616,LOC107681304 coding downstream 250120 26585481 ~ 26588394 (+)
AMCG00014677 LOC107600373,LOC107569583,LOC107690616,LOC107748609,LOC107731761,LOC107681305 coding downstream 289400 26624761 ~ 26628707 (+)
AMCG00014681 NA coding downstream 524372 26859733 ~ 26866240 (+)
G71859 NA non-coding upstream 86466 26231219 ~ 26231565 (+)
G71826 NA non-coding upstream 307031 26010799 ~ 26011000 (+)
G71817 NA non-coding upstream 358329 25952233 ~ 25959702 (+)
G71784 NA non-coding upstream 547542 25770209 ~ 25770489 (+)
G71763 NA non-coding upstream 555289 25705458 ~ 25762742 (+)
G71963 NA non-coding downstream 616935 26952296 ~ 26953253 (+)
G71995 NA non-coding downstream 691414 27026775 ~ 27027272 (+)
G72072 NA non-coding downstream 1139703 27475064 ~ 27479444 (+)
G72169 NA non-coding downstream 1905205 28240566 ~ 28297484 (+)
G72173 NA non-coding downstream 1962308 28297669 ~ 28300813 (+)
G71525 NA other upstream 3462385 22855342 ~ 22855646 (+)
G71004 NA other upstream 8043671 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 8830981 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 9848822 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 10178999 16129479 ~ 16139032 (+)
AMCG00014687 NA other downstream 569516 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 1500142 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 1533342 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 1967012 28302373 ~ 28304073 (+)
AMCG00014729 NA other downstream 2461688 28797049 ~ 28837910 (+)

Expression


Co-expression Network