AMCG00014670


Basic Information

Item Value
gene id AMCG00014670
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26389232 ~ 26409091 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014670
ATGGCCAGTCCCAGAGAGGTCACTAACCAGAGCCTGTCCCTGCGCTCCAGCGATTCGGGGTCATTTCGGACACAGTATTCCTTAACTTTGCCTCACGTCTACCTTTCTGAAATATTTCTAGAAACAAGCTCCCTCAGAAGTCACATTAGTAGCAATGAACTCTGTGGAGAAGCCCGGTTCTGGCATGGGAAGGACTACTGTAACTTCATCCTCAAGGACTGGGTGAAACTGAACAAACCTTTTGATGaCTTCATTGATCGGTATAAAACCCCAAGGATGCCCTGGCATGATATTGGAGTGGTGGTACAAGGCAAGGCAGCCCGAGACATTGCCAGGCACTTCATTCAGAGATGGAACTTTACAAAGCTGGTGAAAAAACGTTCAGGAGCAACTTATTACCCCTGTTTACTACCCAAGTCCCTCTCTGCACCTGCGGACTTCTCTCTGGATATGGGCAAATGCACCTCAGCAAATGTGCAGGTCAGTACTCTGATTAAACTGTATGAAGTGTTTGTCTGTGAGAGGTTGAGAATCCCTTCATTTGGGACAGACTtgctcttctgtgttttttcttattcaatCCAATTCCAGGTTTTGaggtctgtgtgtcagtggtcCATCGGCACAAAAATCCACGAGGAGTCCATTCACCTGGCATACGTGTCAGCGATTGGCAAGagcaagcattttatttatattgagAATCAGTTTTTCATCAGCTGTGCAGACAAAACCATTCACAATGGCATTGGTGATGCACTTATCGAGAGAATATTAAGAGCTTACagTCTGTTCAATgacaatgaaataataattggcCACAGGGAGAAGAAGAAATTCAGAGTGTATGTAGTGATGCCTCTCTTGCCGGGTTTTGAAGGAGATATCTCTACTGGAGGAGGACAGGCCATCAAGGcaatcatgtattttaattacagGACGATGTGCAGAGGGGAGCACTCCATCATCGAGAAACTCAAATGTGTGAATTGCTGGATCAACTACATCTCCTTCTGTGGGTTGAGGACTCACGCTGACCTGGACGGCAAGCTGGTCACTGAGCTCATCTACGTGCACAGCAAACTGATGATAGTTGATGACAACACTGTCATTATCGGCTCTGCCAACATTAATGACAGAAGCATGCTAGGCAAGCGAGACAGCGAGATGGCGGTGATTGTGGAAGACACAGAGTTCCTTCCCTCTGTAATGGATGGAGAAAACTACCAAGCTGGAAGATTTGCCTTTTCACTCCGTGTCGAGTGCTTTAGGTTGGTTCTTGGGCTCCTGGAAGACGTAAGCGTGGATGTCAGTGATCCCATCAGTGACCGATTCTACAAGGAGGTCTGGATGGTGACGGCTGCGAAGAACGCCAGTGTGTATGACAAGGCAAGTGGCAGTCTTCAGGCTTTTGTGTTCCGGTGTGTGCCCACTGACGCGGTGCCCAACAACAAGATCCTGAGGGAGTATATGTCCCGGCCCTTCATGGCCACGGAGGAGCCCATGCTTGCCTGCGAGGAGCTCAGGAAGATCCGGGGATTCCTTGTCCAGTTCCCGTTCTACTTCCTGTCAGAGGAGAACCTCTATCCCTCGATCAACTCCAAAGAAGGCATGATGCCGGTGGAACTGTGGACTACTCCATTTACCTCAGGTACCTTTCTTAACAAACAGCAGTTCCAGCAGagtgtgtgtgaatttaaCCTTATTCTGAAACATATCTTACCTCAGGACATCATGAAAGGTGACGTCCCCCCCGTTATGCAGTCTCTCCATCTCGTAGCACATGTGCTTGAACAGGAGTTTATCTTTATCCAGATCGACCTCCAACCTCCCTCTCAGAAGCCGCAGCAGAAACTTTACCCTAACGGTGTTTATCCGGTGTACAGAAAGGAGGCAGCACCTGTGGAAagaaccagcatgaaaacagaaaatattaattaa

Function

GO: NA

KEGG:

id description
K01115 PLD1_2; phospholipase D1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014670 True 1941 mRNA 0.47 14 26389232 26409091

Neighbor

gene id symbol gene type direction distance location
AMCG00014669 LOC107748618 coding upstream 9 26373224 ~ 26389223 (+)
AMCG00014668 pcca,LOC107654247 coding upstream 53871 26318031 ~ 26335361 (+)
AMCG00014667 pcca,LOC107719738,LOC107707835 coding upstream 144774 26203883 ~ 26244458 (+)
AMCG00014664 zic2,LOC106586042 coding upstream 216758 26168461 ~ 26172474 (+)
AMCG00014665 NA coding upstream 265464 26085859 ~ 26123768 (+)
AMCG00014676 itgbl1,LOC107748609,LOC107690616,LOC107681304 coding downstream 176390 26585481 ~ 26588394 (+)
AMCG00014677 LOC107600373,LOC107569583,LOC107690616,LOC107748609,LOC107731761,LOC107681305 coding downstream 215670 26624761 ~ 26628707 (+)
AMCG00014681 NA coding downstream 450642 26859733 ~ 26866240 (+)
AMCG00014682 cdc16,LOC106581643,LOC107673708,LOC107597489 coding downstream 460135 26869226 ~ 26881796 (+)
AMCG00014680 NA coding downstream 477396 26886487 ~ 26890130 (+)
G71859 NA non-coding upstream 157667 26231219 ~ 26231565 (+)
G71826 NA non-coding upstream 378232 26010799 ~ 26011000 (+)
G71817 NA non-coding upstream 429530 25952233 ~ 25959702 (+)
G71784 NA non-coding upstream 618743 25770209 ~ 25770489 (+)
G71772 NA non-coding upstream 640824 25745803 ~ 25748408 (+)
G71963 NA non-coding downstream 543205 26952296 ~ 26953253 (+)
G71995 NA non-coding downstream 617684 27026775 ~ 27027272 (+)
G72072 NA non-coding downstream 1065973 27475064 ~ 27479444 (+)
G72169 NA non-coding downstream 1831475 28240566 ~ 28297484 (+)
G72173 NA non-coding downstream 1888578 28297669 ~ 28300813 (+)
G71525 NA other upstream 3533586 22855342 ~ 22855646 (+)
G71004 NA other upstream 8114872 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 8902182 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 9920023 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 10250200 16129479 ~ 16139032 (+)
AMCG00014687 NA other downstream 495786 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 1426412 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 1459612 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 1893282 28302373 ~ 28304073 (+)
AMCG00014729 NA other downstream 2387958 28797049 ~ 28837910 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_01570544_01595199 NA coding CI01000009 null 1570079 ~ 1595466 (+)