AMCG00014682 (cdc16,LOC106581643,LOC107673708,LOC107597489)


Basic Information

Item Value
gene id AMCG00014682
gene name cdc16,LOC106581643,LOC107673708,LOC107597489
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26869226 ~ 26881796 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014682
CGAGTGTAACACCGCCGGTACTACAGAAGTCGCGGGATCGGATGATAATTACATTTaggcggtgtgtgtgtgtgtgtttgtttctaaaccttacttttttattttttaaatatagcatGGCAAACTTTTGAGTCCTTAAGGAATAAGTGCAACGATCACCATGAACCTGGACCGACTGCGGAAGCGTGTCCGTCACTATATCGATCAGCAACAGTATCAAAGTGCCCTGTTTTGGGCGGACAAAATTGCATCACTGTCTCACGAGGACCCCCAAGACATTTACTGGCTGGCACAGTGCCTTTACCTCACATCACAGTACCACAGGGCCTCTCATGCTCTCCGGTCACGCAAACTAGACAAGGCGTATGGTGCGTGTCAGTATCTTGCTGCTAGATGTCAttatgctgCTAAAGAGTACCAGCAAGCTCTTGACATCCTTGACATGGAAGAGCTGGCTAGTAAGAAGTTGCTCGACAAAACAAGTGCAAAGGAGGATAATGGCATCAAAGAGGCTGCCAAGGACTGGGGCATGTCTTCCTCCTCAATCAACAGCTCTATCTGCCTTCTGCGGGGGAAGATCTATGATGCCATGGACAACAGACCCCTGGCAACTTCCAGCTACAAAGAGGCCTTGAAGCTAGACGTGTACTGCTTTGAAGCCTTTGACCTTTTAACGTCACATCATATGCTGACAGCTCAAGAAGaaaaagattTTTTGGAGTCCCTTCCTCTAAGTCAACAATGTACAGGAGAAGAACAGGAACTGCTACGTTTTCTTTTTGAAAGTAAATTGAAAAAGTATAACAAACCCAGTGAAACAGTGATCCCGGACACAGTGAATGGCCTTCAGGACAACTTGGATGTTGTAGTTTCTCTAGCAGAGAGACATTATTATAACTgtgattttaaaacatgctACAAACTCACGTCTATGGTGATGGTCAAAGATCCATTCCATGCCAATTGCCTCCCAGTACACATAGGAACACTGGTAGAACTCAGCAAAGCAAATGAGCTATTTTACCTGTCACACAAATTGGTGGATTTGTACCCAAATAGCCCAGTGTCATGGTTTGCTGTCGGATGCTATTATTTAATGGTTGGTCACAAAAACGAGCATGCAAGAAGATACCTTAGTAAAGCCACCACTCTGGAGCGGACATATGGCCCTGCTTGGATTGCCTACGGGCACTCTTTTGCGGTGGAGAGTGAACATGACCAAGCCATGGCAGCTTACTTCACTGCTGCGCAGCTCATGAAGGGGTGCCATCTCCCAATGCTCTACATCGGTCTGGAGTACGGTCTGACCAACAACTCCAGGCTGGCCGAGAAGTTTTTCAGCCAGGCCCTCAGCATCGCTCCAGAGGATCCTTTTGTGATGCACGAAGTTGGAGTGGTGGCCTTCCAGAACGAAGAGAAGTACGACCAGGCTTTGGAGTATCATCGACAGGCTCTCGTGCTCATCCCCCAGCATGCTTCCACATACTCTGCTATTGGATATGTGCACAGCCTCATGGGAGACTTCGAGAGTGCAATTGACTATTTTCACACAGCTCTCGGTCTTAAAAGGGATGACACGTTTTCTGTGACGATGCTGGCGCACTGCATTGAGATGTACATTGGAGATGCCGACGCTTACATAGGGACTGACATCAAGGACCAGCTGCGCAGTACGCTGAGCACTCCGGCCCTGATGAAGATGCTCAACCACAGTTCGGTGGACAGCAGCGAGTTCAGGCCCCAGCCTCTGGAGGAGAGCGGCATCATGGCTCTCGAGACATCGCCCCACCCTGACAAATCCACCGAGGCTGCTCCACGGCCCTACGTGCCCCTGGAGTTTGACATGTACGAAAGCGATATGATGTTAGAGACCTCCATGTCTGACACCAGCACGTGATGGCCGAGGCCTGCCGCCTTCCTGGGGTCATTGCGAAGTGTGACTTCCCCTGAGACAGTGGGCCGAGACTGACCCGAACCACCCTGACCAGGGGAGGAAACGCAGCGGCCGTGAACGTCCACCCTCTCAATTGTCACTCTcaagccagctatgtattactTACCTGTGGATTTTTACatcattgaataaataaaatgacctgAACAGATTGGCAGTTTTCCAGCTAATGCATTGATATAATAAACGGcatgtgaattta

Function

symbol description
cdc16 Acts upstream of or within mitotic cell cycle. Predicted to be part of anaphase-promoting complex. Predicted to be active in cytoplasm. Is expressed in digestive system; head; heart; and immature eye. Orthologous to human CDC16 (cell division cycle 16).

NR:

description
PREDICTED: cell division cycle protein 16 homolog isoform X2

GO:

id name namespace
GO:0051301 cell division biological_process
GO:0000278 mitotic cell cycle biological_process

KEGG:

id description
K03353 APC6, CDC16; anaphase-promoting complex subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014682 True 2156 mRNA 0.49 16 26869226 26881796

Neighbor

gene id symbol gene type direction distance location
AMCG00014681 NA coding upstream 2986 26859733 ~ 26866240 (+)
AMCG00014677 LOC107600373,LOC107569583,LOC107690616,LOC107748609,LOC107731761,LOC107681305 coding upstream 240519 26624761 ~ 26628707 (+)
AMCG00014676 itgbl1,LOC107748609,LOC107690616,LOC107681304 coding upstream 280832 26585481 ~ 26588394 (+)
AMCG00014670 NA coding upstream 460135 26389232 ~ 26409091 (+)
AMCG00014669 LOC107748618 coding upstream 480003 26373224 ~ 26389223 (+)
AMCG00014680 NA coding downstream 4691 26886487 ~ 26890130 (+)
AMCG00014684 upf3a coding downstream 8936 26890732 ~ 26900814 (+)
AMCG00014685 NA coding downstream 44038 26925834 ~ 26961877 (+)
AMCG00014683 asmtl coding downstream 84949 26966745 ~ 26974382 (+)
AMCG00014690 slc25a6,slc25a5,LOC107597494,LOC108426068,LOC107756767 coding downstream 95639 26977435 ~ 26980300 (+)
G71859 NA non-coding upstream 637661 26231219 ~ 26231565 (+)
G71826 NA non-coding upstream 858226 26010799 ~ 26011000 (+)
G71817 NA non-coding upstream 909524 25952233 ~ 25959702 (+)
G71784 NA non-coding upstream 1098737 25770209 ~ 25770489 (+)
G71772 NA non-coding upstream 1120818 25745803 ~ 25748408 (+)
G71963 NA non-coding downstream 70500 26952296 ~ 26953253 (+)
G71995 NA non-coding downstream 144979 27026775 ~ 27027272 (+)
G72072 NA non-coding downstream 593268 27475064 ~ 27479444 (+)
G72169 NA non-coding downstream 1358770 28240566 ~ 28297484 (+)
G72173 NA non-coding downstream 1415873 28297669 ~ 28300813 (+)
G71525 NA other upstream 4013580 22855342 ~ 22855646 (+)
G71004 NA other upstream 8594866 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 9382176 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 10400017 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 10730194 16129479 ~ 16139032 (+)
AMCG00014687 NA other downstream 23081 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 953707 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 986907 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 1420577 28302373 ~ 28304073 (+)
AMCG00014729 NA other downstream 1915253 28797049 ~ 28837910 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_03633868_03640910 CDC16 coding CI01000009 null 3633704 ~ 3640910 (-)
mexican tetra (Astyanax mexicanus) G171231 cdc16,LOC107595809,LOC107756764,LOC107695467,LOC107748135,LOC107597489 non-coding NC_035915.1 CM008318.1 31957167 ~ 31960193 (-)