AMCG00014684 (upf3a)


Basic Information

Item Value
gene id AMCG00014684
gene name upf3a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26890732 ~ 26900814 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014684
ATGCCCCTGATGTGCGGTaatgtcacacaaacacagtcagtGGGATCTTGTGAGGCTCGGCTGCCCGCTCAAATCTCGCGGTACTTGGCCTCAGTTCTCGCGAGCGGGGCTGTCACCCTGACCGCGGACAGAGAAATGAGGTCCGAGAAGGAGTTGCTGACCGGCGGCCGGGAGAGGAGGATCGTCGAAATACAGTTCAGGGACTTGCCGAGGGACCAGGACGGAATCCCGACCAACACGAAGcacaaggaagagaaaaaagaggTCTTCACAAAGGTGGTTATTCGGCGCCTCCCTCCTAATCTGTCAAAGGAACAGCTTGAAGATCAACTGAATCCTTTACCTGCGTATGACTATTTTGAATTCTTTTCAGCTGATCAAAGCCTTTATCCACACCTTTTCTCCAGAGCTTACATTAATTTTAAGAACCCTGAAGACATTGTTCTCTTTAGAGACCGCTTTGATGGATACGTTTTCATTGATAACAAAGgTCAGGAATATCCTGCTGTCGTAGAATTTGCACCTTTTCAAAAAGTTTCAAAGAAGaagcttaaaaagaaagatgccaAAGCCGGCAGTATTGAAGAAGATCCTGAATACAAAAAAATcagggaggagaagagagaggagagacgtCGCAGAGAGCTGGAGAAGAAGCGcctgagggaggaggagaagagaaagCGTAGGGAGGAAGAAAGACGTAAACGCAAGGAGGTCGAGAAGCAGAAGAAGCTGGCAGAGAAGGAAATTAAGATCAAGCTCCTAAAAAAGCCTGAGAAAGAGGATGATGTGGACACAGACAGGCTGAAGGAAAAGGGAGACAGTGGAGACACTGAGAAGAGCAAATGGGGTAAATCCTCTTTATCTGGacacatgaaaatgaaacacCCAGACAAAGATTCAAAAGACAAAGCGCATGCCGACAGCGACCGAGAGCAACGTGAGCACGGGAGGAGGCTGCGGGAGAAGGATCCTGACCGGCAGAGAGGCCGAGACGAGGAGCGCCGGAGGCAGAGGCACCACTACGAGTTCGACAAGTTCATGCGGCGCAAAGAGGAGACCAAGTGGGGCAAGGGATACTGTCAGGACCGAGCCAAGAAGGACGGGCACAGCAGCTACTCCTACTGCGGAGACCTGGGAGACAAACTGGGCAAGGACGACCGGGCTGACGACATGGGGTCCAGGAAGGAGCGCATACGCAACAAGGACCGCCCCGCTATGCAACTGTACCAGCCCGGGGCCCGGAGTCGCACCCGAGTCGGATCTGGAGGCAAATCCTATGACTGCTCCAACGTCTCTCCAGAGGACACCGGGGACAGGAAGTACGATCTAGCAACAGGAACCGGATCGGAGAAGAGTGGGGACGAGTAG

Function

symbol description
upf3a Predicted to enable telomeric DNA binding activity. Predicted to be involved in positive regulation of translation. Predicted to act upstream of or within mRNA transport and nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. Part of protein-containing complex. Orthologous to human UPF3A (UPF3A regulator of nonsense mediated mRNA decay).

NR:

description
PREDICTED: regulator of nonsense transcripts 3A isoform X3

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014684 True 1374 mRNA 0.52 9 26890732 26900814

Neighbor

gene id symbol gene type direction distance location
AMCG00014680 NA coding upstream 602 26886487 ~ 26890130 (+)
AMCG00014682 cdc16,LOC106581643,LOC107673708,LOC107597489 coding upstream 8936 26869226 ~ 26881796 (+)
AMCG00014681 NA coding upstream 24492 26859733 ~ 26866240 (+)
AMCG00014677 LOC107600373,LOC107569583,LOC107690616,LOC107748609,LOC107731761,LOC107681305 coding upstream 262025 26624761 ~ 26628707 (+)
AMCG00014676 itgbl1,LOC107748609,LOC107690616,LOC107681304 coding upstream 302338 26585481 ~ 26588394 (+)
AMCG00014685 NA coding downstream 25020 26925834 ~ 26961877 (+)
AMCG00014683 asmtl coding downstream 65931 26966745 ~ 26974382 (+)
AMCG00014690 slc25a6,slc25a5,LOC107597494,LOC108426068,LOC107756767 coding downstream 76621 26977435 ~ 26980300 (+)
AMCG00014691 ppp2r3b,LOC108426065,LOC106581654,LOC100705877 coding downstream 420800 27321614 ~ 27337656 (+)
AMCG00014701 NA coding downstream 582274 27483088 ~ 27491264 (+)
G71859 NA non-coding upstream 659167 26231219 ~ 26231565 (+)
G71826 NA non-coding upstream 879732 26010799 ~ 26011000 (+)
G71817 NA non-coding upstream 931030 25952233 ~ 25959702 (+)
G71784 NA non-coding upstream 1120243 25770209 ~ 25770489 (+)
G71772 NA non-coding upstream 1142324 25745803 ~ 25748408 (+)
G71963 NA non-coding downstream 51482 26952296 ~ 26953253 (+)
G71995 NA non-coding downstream 125961 27026775 ~ 27027272 (+)
G72072 NA non-coding downstream 574250 27475064 ~ 27479444 (+)
G72169 NA non-coding downstream 1339752 28240566 ~ 28297484 (+)
G72173 NA non-coding downstream 1396855 28297669 ~ 28300813 (+)
G71525 NA other upstream 4035086 22855342 ~ 22855646 (+)
G71004 NA other upstream 8616372 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 9403682 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 10421523 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 10751700 16129479 ~ 16139032 (+)
AMCG00014687 NA other downstream 4063 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 934689 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 967889 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 1401559 28302373 ~ 28304073 (+)
AMCG00014729 NA other downstream 1896235 28797049 ~ 28837910 (+)

Expression


Co-expression Network